RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 NFIAQ12857 509 aa18.4■□□□□ 0.54
CLN3-213ENST00000565047 MVPQ14764 893 aaKnown RBP18.4■□□□□ 0.54
CLN3-213ENST00000565047 IFNL1Q8IU54 200 aa18.4■□□□□ 0.54
CLN3-213ENST00000565047 FAM151AQ8WW52 585 aa18.4■□□□□ 0.54
CLN3-213ENST00000565047 GPR108Q9NPR9 543 aa18.4■□□□□ 0.54
CLN3-213ENST00000565047 HMG20BQ9P0W2 317 aa18.4■□□□□ 0.54
CLN3-213ENST00000565047 FAM198AQ9UFP1 575 aa18.4■□□□□ 0.54
CLN3-213ENST00000565047 ARID4AP29374 1257 aaPredicted RBP18.39■□□□□ 0.53
CLN3-213ENST00000565047 MAP3K9P80192 1104 aa18.39■□□□□ 0.53
CLN3-213ENST00000565047 G3BP1Q13283 466 aaKnown RBP eCLIP18.39■□□□□ 0.53
CLN3-213ENST00000565047 DGKZQ13574 1117 aa18.39■□□□□ 0.53
CLN3-213ENST00000565047 VGLL4Q14135 290 aa18.39■□□□□ 0.53
CLN3-213ENST00000565047 ITPRIPQ8IWB1 547 aa18.39■□□□□ 0.53
CLN3-213ENST00000565047 FTSJ3Q8IY81 847 aaKnown RBP18.39■□□□□ 0.53
CLN3-213ENST00000565047 CNKSR2Q8WXI2 1034 aa18.39■□□□□ 0.53
CLN3-213ENST00000565047 MS4A4AQ96JQ5 239 aa18.39■□□□□ 0.53
CLN3-213ENST00000565047 PTPN18Q99952 460 aa18.39■□□□□ 0.53
CLN3-213ENST00000565047 RFX7Q2KHR2 1363 aa18.39■□□□□ 0.53
CLN3-213ENST00000565047 ZFPM1Q8IX07 1006 aa18.38■□□□□ 0.53
CLN3-213ENST00000565047 ZGPATQ8N5A5 531 aaKnown RBP18.38■□□□□ 0.53
CLN3-213ENST00000565047 PANK1Q8TE04 598 aa18.38■□□□□ 0.53
CLN3-213ENST00000565047 ZNF296Q8WUU4 475 aaPredicted RBP18.38■□□□□ 0.53
CLN3-213ENST00000565047 OPTNQ96CV9 577 aa18.38■□□□□ 0.53
CLN3-213ENST00000565047 NEUROD6Q96NK8 337 aa18.38■□□□□ 0.53
CLN3-213ENST00000565047 ELP3Q9H9T3 547 aa18.38■□□□□ 0.53
CLN3-213ENST00000565047 GPR25O00155 361 aa18.37■□□□□ 0.53
CLN3-213ENST00000565047 PI16Q6UXB8 463 aa18.37■□□□□ 0.53
CLN3-213ENST00000565047 IDI2Q9BXS1 227 aa18.37■□□□□ 0.53
CLN3-213ENST00000565047 USP40Q9NVE5 1235 aa18.37■□□□□ 0.53
CLN3-213ENST00000565047 TMOD2Q9NZR1 351 aa18.37■□□□□ 0.53
CLN3-213ENST00000565047 ZNF112Q9UJU3 913 aa18.37■□□□□ 0.53
CLN3-213ENST00000565047 SNCAIPQ9Y6H5 919 aa18.37■□□□□ 0.53
CLN3-213ENST00000565047 ATRNL1Q5VV63 1379 aa18.37■□□□□ 0.53
CLN3-213ENST00000565047 MCAMP43121 646 aa18.36■□□□□ 0.53
CLN3-213ENST00000565047 TNNI3KQ59H18 835 aa18.36■□□□□ 0.53
CLN3-213ENST00000565047 CEP85Q6P2H3 762 aa18.36■□□□□ 0.53
CLN3-213ENST00000565047 SPATA5Q8NB90 893 aa18.36■□□□□ 0.53
CLN3-213ENST00000565047 ABCF2Q9UG63 623 aa18.36■□□□□ 0.53
CLN3-213ENST00000565047 FPGT-TNNI3KV9GXZ4 949 aa18.36■□□□□ 0.53
CLN3-213ENST00000565047 SURF6O75683 361 aaKnown RBP18.35■□□□□ 0.53
CLN3-213ENST00000565047 ALDH1A1P00352 501 aa18.35■□□□□ 0.53
CLN3-213ENST00000565047 MECOMQ03112 1051 aa18.35■□□□□ 0.53
CLN3-213ENST00000565047 SH3BP5LQ7L8J4 393 aa18.35■□□□□ 0.53
CLN3-213ENST00000565047 ZKSCAN4Q969J2 545 aaPredicted RBP18.35■□□□□ 0.53
CLN3-213ENST00000565047 MYH2Q9UKX2 1941 aa18.34■□□□□ 0.53
CLN3-213ENST00000565047 GPR75-ASB3A0A0A6YYF3 556 aa18.34■□□□□ 0.53
CLN3-213ENST00000565047 SPDYE5A6NIY4 337 aa18.34■□□□□ 0.53
CLN3-213ENST00000565047 WDHD1O75717 1129 aaPredicted RBP18.34■□□□□ 0.53
CLN3-213ENST00000565047 RHBDL3P58872 404 aa18.34■□□□□ 0.53
CLN3-213ENST00000565047 MAP3K10Q02779 954 aa18.34■□□□□ 0.53
CLN3-213ENST00000565047 TCP10Q12799 353 aa18.34■□□□□ 0.53
CLN3-213ENST00000565047 TBC1D9Q6ZT07 1266 aa18.34■□□□□ 0.53
CLN3-213ENST00000565047 CTU1Q7Z7A3 348 aaKnown RBP18.34■□□□□ 0.53
CLN3-213ENST00000565047 NSUN4Q96CB9 384 aaKnown RBP18.34■□□□□ 0.53
CLN3-213ENST00000565047 DBNDD2Q9BQY9 259 aa18.34■□□□□ 0.53
CLN3-213ENST00000565047 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.34■□□□□ 0.53
CLN3-213ENST00000565047 MROH7-TTC4A0A0A0MT08 1334 aa18.33■□□□□ 0.53
CLN3-213ENST00000565047 SPTY2D1Q68D10 685 aaPredicted RBP18.33■□□□□ 0.52
CLN3-213ENST00000565047 MIGA2Q7L4E1 593 aa18.33■□□□□ 0.52
CLN3-213ENST00000565047 BRI3BPQ8WY22 251 aa18.33■□□□□ 0.52
CLN3-213ENST00000565047 HOOK2Q96ED9 719 aa18.33■□□□□ 0.52
CLN3-213ENST00000565047 ZNF512BQ96KM6 892 aaPredicted RBP18.33■□□□□ 0.52
CLN3-213ENST00000565047 WRNIP1Q96S55 665 aa18.33■□□□□ 0.52
CLN3-213ENST00000565047 DDX4Q9NQI0 724 aaKnown RBP18.33■□□□□ 0.52
CLN3-213ENST00000565047 ENTPD3O75355 529 aa18.32■□□□□ 0.52
CLN3-213ENST00000565047 UQCRFS1P1P0C7P4 283 aa18.32■□□□□ 0.52
CLN3-213ENST00000565047 INPP5BP32019 993 aa18.32■□□□□ 0.52
CLN3-213ENST00000565047 RGS19P49795 217 aa18.32■□□□□ 0.52
CLN3-213ENST00000565047 DCAF15Q66K64 600 aa18.32■□□□□ 0.52
CLN3-213ENST00000565047 ERICH6Q7L0X2 663 aa18.32■□□□□ 0.52
CLN3-213ENST00000565047 ERO1BQ86YB8 467 aa18.32■□□□□ 0.52
CLN3-213ENST00000565047 DZIP1Q86YF9 867 aaKnown RBP18.32■□□□□ 0.52
CLN3-213ENST00000565047 EAF2Q96CJ1 260 aaPredicted RBP18.32■□□□□ 0.52
CLN3-213ENST00000565047 ZNF341Q9BYN7 854 aa18.32■□□□□ 0.52
CLN3-213ENST00000565047 DBNLQ9UJU6 430 aaKnown RBP18.32■□□□□ 0.52
CLN3-213ENST00000565047 CSADQ9Y600 493 aa18.32■□□□□ 0.52
CLN3-213ENST00000565047 CCDC85CA6NKD9 419 aa18.31■□□□□ 0.52
CLN3-213ENST00000565047 PHF20L1A8MW92 1017 aa18.31■□□□□ 0.52
CLN3-213ENST00000565047 BTDP43251 543 aa18.31■□□□□ 0.52
CLN3-213ENST00000565047 RGS3P49796 1198 aa18.31■□□□□ 0.52
CLN3-213ENST00000565047 GORABQ5T7V8 394 aa18.31■□□□□ 0.52
CLN3-213ENST00000565047 SIRT2Q8IXJ6 389 aa18.31■□□□□ 0.52
CLN3-213ENST00000565047 OTUD5Q96G74 571 aa18.31■□□□□ 0.52
CLN3-213ENST00000565047 ZBTB40Q9NUA8 1239 aa18.31■□□□□ 0.52
CLN3-213ENST00000565047 HTTP42858 3142 aa18.3■□□□□ 0.52
CLN3-213ENST00000565047 IRF6O14896 467 aa18.3■□□□□ 0.52
CLN3-213ENST00000565047 FKTNO75072 461 aa18.3■□□□□ 0.52
CLN3-213ENST00000565047 NPM3O75607 178 aaKnown RBP18.3■□□□□ 0.52
CLN3-213ENST00000565047 CAP1Q01518 475 aa18.3■□□□□ 0.52
CLN3-213ENST00000565047 CRHR2Q13324 411 aa18.3■□□□□ 0.52
CLN3-213ENST00000565047 SLF2Q8IX21 1173 aa18.3■□□□□ 0.52
CLN3-213ENST00000565047 TLR7Q9NYK1 1049 aaKnown RBP18.3■□□□□ 0.52
CLN3-213ENST00000565047 RCAN3Q9UKA8 241 aa18.3■□□□□ 0.52
CLN3-213ENST00000565047 DDTLA6NHG4 134 aaPredicted RBP18.29■□□□□ 0.52
CLN3-213ENST00000565047 CYP2E1P05181 493 aaPredicted RBP18.29■□□□□ 0.52
CLN3-213ENST00000565047 SLURP2P0DP57 97 aa18.29■□□□□ 0.52
CLN3-213ENST00000565047 GTF2A2P52657 109 aa18.29■□□□□ 0.52
CLN3-213ENST00000565047 PPIL2Q13356 520 aa18.29■□□□□ 0.52
CLN3-213ENST00000565047 PKN2Q16513 984 aaKnown RBP18.29■□□□□ 0.52
CLN3-213ENST00000565047 NOL9Q5SY16 702 aaKnown RBP18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms