RNA–Protein interactions for RNA: ENST00000564678.1

HERPUD1-209, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 1 (best)

Gene HERPUD1, Length 2,199 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-209ENST00000564678 CAMTA2O94983 1202 aa8.54□□□□□ -1.04
HERPUD1-209ENST00000564678 FGFR2P21802 821 aa8.54□□□□□ -1.04
HERPUD1-209ENST00000564678 ARID4AP29374 1257 aaPredicted RBP8.54□□□□□ -1.04
HERPUD1-209ENST00000564678 ZAP70P43403 619 aa8.54□□□□□ -1.04
HERPUD1-209ENST00000564678 HMGN5P82970 282 aaKnown RBP8.54□□□□□ -1.04
HERPUD1-209ENST00000564678 FGD1P98174 961 aa8.54□□□□□ -1.04
HERPUD1-209ENST00000564678 PWP2Q15269 919 aaKnown RBP8.54□□□□□ -1.04
HERPUD1-209ENST00000564678 PUM3Q15397 648 aaKnown RBP8.54□□□□□ -1.04
HERPUD1-209ENST00000564678 SF3A1Q15459 793 aaKnown RBP8.54□□□□□ -1.04
HERPUD1-209ENST00000564678 IMMTQ16891 758 aaKnown RBP8.54□□□□□ -1.04
HERPUD1-209ENST00000564678 ZNF274Q96GC6 653 aaPredicted RBP8.54□□□□□ -1.04
HERPUD1-209ENST00000564678 CHAMP1Q96JM3 812 aa8.54□□□□□ -1.04
HERPUD1-209ENST00000564678 ZNF652Q9Y2D9 606 aa8.54□□□□□ -1.04
HERPUD1-209ENST00000564678 RTL9Q8NET4 1388 aa8.54□□□□□ -1.04
HERPUD1-209ENST00000564678 AKAP11Q9UKA4 1901 aa8.54□□□□□ -1.04
HERPUD1-209ENST00000564678 ZNF831Q5JPB2 1677 aa8.54□□□□□ -1.04
HERPUD1-209ENST00000564678 MCAMP43121 646 aa8.54□□□□□ -1.04
HERPUD1-209ENST00000564678 EVCP57679 992 aa8.54□□□□□ -1.04
HERPUD1-209ENST00000564678 KRT85P78386 507 aa8.54□□□□□ -1.04
HERPUD1-209ENST00000564678 COL9A3Q14050 684 aaPredicted RBP8.54□□□□□ -1.04
HERPUD1-209ENST00000564678 UBE3CQ15386 1083 aa8.54□□□□□ -1.04
HERPUD1-209ENST00000564678 WASHC4Q2M389 1173 aa8.54□□□□□ -1.04
HERPUD1-209ENST00000564678 TSNAXIP1Q2TAA8 658 aa8.54□□□□□ -1.04
HERPUD1-209ENST00000564678 SUSD4Q5VX71 490 aa8.54□□□□□ -1.04
HERPUD1-209ENST00000564678 STOX1Q6ZVD7 989 aa8.54□□□□□ -1.04
HERPUD1-209ENST00000564678 SMARCC2Q8TAQ2 1214 aa8.54□□□□□ -1.04
HERPUD1-209ENST00000564678 TCEANC2Q96MN5 208 aa8.54□□□□□ -1.04
HERPUD1-209ENST00000564678 RBM27Q9P2N5 1060 aaKnown RBP8.54□□□□□ -1.04
HERPUD1-209ENST00000564678 CNPY2Q9Y2B0 182 aa8.54□□□□□ -1.04
HERPUD1-209ENST00000564678 ELP1O95163 1332 aa8.53□□□□□ -1.04
HERPUD1-209ENST00000564678 MYH7P12883 1935 aa8.53□□□□□ -1.04
HERPUD1-209ENST00000564678 SYCE3A1L190 88 aa8.53□□□□□ -1.04
HERPUD1-209ENST00000564678 VPS37CA5D8V6 355 aaPredicted RBP8.53□□□□□ -1.04
HERPUD1-209ENST00000564678 M0R2C6 588 aa8.53□□□□□ -1.04
HERPUD1-209ENST00000564678 GADD45BO75293 160 aaPredicted RBP8.53□□□□□ -1.04
HERPUD1-209ENST00000564678 ADD2P35612 726 aa8.53□□□□□ -1.04
HERPUD1-209ENST00000564678 SCARF1Q14162 830 aa8.53□□□□□ -1.04
HERPUD1-209ENST00000564678 CCDC152Q4G0S7 254 aa8.53□□□□□ -1.04
HERPUD1-209ENST00000564678 CCDC183Q5T5S1 534 aa8.53□□□□□ -1.04
HERPUD1-209ENST00000564678 BRF1Q92994 677 aa8.53□□□□□ -1.04
HERPUD1-209ENST00000564678 TRIM44Q96DX7 344 aaPredicted RBP8.53□□□□□ -1.04
HERPUD1-209ENST00000564678 ACSBG1Q96GR2 724 aa8.53□□□□□ -1.04
HERPUD1-209ENST00000564678 MPHOSPH8Q99549 860 aa8.53□□□□□ -1.04
HERPUD1-209ENST00000564678 SCAND2PQ9GZW5 306 aaPredicted RBP8.53□□□□□ -1.04
HERPUD1-209ENST00000564678 ZSCAN16Q9H4T2 348 aaPredicted RBP8.53□□□□□ -1.04
HERPUD1-209ENST00000564678 PPME1Q9Y570 386 aa8.53□□□□□ -1.04
HERPUD1-209ENST00000564678 LAMA4Q16363 1823 aa8.53□□□□□ -1.04
HERPUD1-209ENST00000564678 FGAP02671 866 aa8.52□□□□□ -1.04
HERPUD1-209ENST00000564678 SLC5A1P13866 664 aa8.52□□□□□ -1.04
HERPUD1-209ENST00000564678 VAMP1P23763 118 aa8.52□□□□□ -1.04
HERPUD1-209ENST00000564678 DNM1Q05193 864 aaKnown RBP8.52□□□□□ -1.04
HERPUD1-209ENST00000564678 ITPK1Q13572 414 aa8.52□□□□□ -1.04
HERPUD1-209ENST00000564678 CCDC102BQ68D86 513 aa8.52□□□□□ -1.04
HERPUD1-209ENST00000564678 ILDR1Q86SU0 546 aaPredicted RBP8.52□□□□□ -1.04
HERPUD1-209ENST00000564678 FAM184AQ8NB25 1140 aa8.52□□□□□ -1.04
HERPUD1-209ENST00000564678 RBM46Q8TBY0 533 aaKnown RBP8.52□□□□□ -1.04
HERPUD1-209ENST00000564678 RBSNQ9H1K0 784 aa8.52□□□□□ -1.04
HERPUD1-209ENST00000564678 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.52□□□□□ -1.04
HERPUD1-209ENST00000564678 WDR19Q8NEZ3 1342 aa8.52□□□□□ -1.04
HERPUD1-209ENST00000564678 MYH14Q7Z406 1995 aaKnown RBP8.52□□□□□ -1.05
HERPUD1-209ENST00000564678 LRP5O75197 1615 aa8.52□□□□□ -1.05
HERPUD1-209ENST00000564678 ATRNO75882 1429 aa8.52□□□□□ -1.05
HERPUD1-209ENST00000564678 NUTM2BA6NNL0 878 aaPredicted RBP8.52□□□□□ -1.05
HERPUD1-209ENST00000564678 NUTM2EB1AL46 878 aaPredicted RBP8.52□□□□□ -1.05
HERPUD1-209ENST00000564678 GPAA1O43292 621 aa8.52□□□□□ -1.05
HERPUD1-209ENST00000564678 SCRN1Q12765 414 aa8.52□□□□□ -1.05
HERPUD1-209ENST00000564678 STK3Q13188 491 aa8.52□□□□□ -1.05
HERPUD1-209ENST00000564678 VPS72Q15906 364 aa8.52□□□□□ -1.05
HERPUD1-209ENST00000564678 FOXD4L6Q3SYB3 417 aaPredicted RBP8.52□□□□□ -1.05
HERPUD1-209ENST00000564678 SLFNL1Q499Z3 407 aa8.52□□□□□ -1.05
HERPUD1-209ENST00000564678 HS1BP3Q53T59 392 aa8.52□□□□□ -1.05
HERPUD1-209ENST00000564678 FOXD4L3Q6VB84 417 aaPredicted RBP8.52□□□□□ -1.05
HERPUD1-209ENST00000564678 NUTM2AQ8IVF1 878 aaPredicted RBP8.52□□□□□ -1.05
HERPUD1-209ENST00000564678 SPIRE2Q8WWL2 714 aa8.52□□□□□ -1.05
HERPUD1-209ENST00000564678 PUS7LQ9H0K6 701 aaKnown RBP8.52□□□□□ -1.05
HERPUD1-209ENST00000564678 ZNF213O14771 459 aa8.51□□□□□ -1.05
HERPUD1-209ENST00000564678 NTSR2O95665 410 aa8.51□□□□□ -1.05
HERPUD1-209ENST00000564678 MCM5P33992 734 aa8.51□□□□□ -1.05
HERPUD1-209ENST00000564678 IGHMBP2P38935 993 aaKnown RBP8.51□□□□□ -1.05
HERPUD1-209ENST00000564678 UVSSAQ2YD98 709 aa8.51□□□□□ -1.05
HERPUD1-209ENST00000564678 SLC9C2Q5TAH2 1124 aa8.51□□□□□ -1.05
HERPUD1-209ENST00000564678 ATL3Q6DD88 541 aa8.51□□□□□ -1.05
HERPUD1-209ENST00000564678 CDC37L1Q7L3B6 337 aa8.51□□□□□ -1.05
HERPUD1-209ENST00000564678 NCOA7Q8NI08 942 aa8.51□□□□□ -1.05
HERPUD1-209ENST00000564678 SP7Q8TDD2 431 aaPredicted RBP8.51□□□□□ -1.05
HERPUD1-209ENST00000564678 TSPY26PQ9H489 355 aa8.51□□□□□ -1.05
HERPUD1-209ENST00000564678 BCCIPQ9P287 314 aaKnown RBP eCLIP8.51□□□□□ -1.05
HERPUD1-209ENST00000564678 NIP7Q9Y221 180 aaKnown RBP eCLIP8.51□□□□□ -1.05
HERPUD1-209ENST00000564678 FOXP2O15409 715 aa8.51□□□□□ -1.05
HERPUD1-209ENST00000564678 FIBPO43427 364 aa8.51□□□□□ -1.05
HERPUD1-209ENST00000564678 DHX16O60231 1041 aaKnown RBP8.51□□□□□ -1.05
HERPUD1-209ENST00000564678 ERCC5P28715 1186 aaPredicted RBP8.51□□□□□ -1.05
HERPUD1-209ENST00000564678 ALX1Q15699 326 aa8.51□□□□□ -1.05
HERPUD1-209ENST00000564678 NAA16Q6N069 864 aaPredicted RBP8.51□□□□□ -1.05
HERPUD1-209ENST00000564678 PDLIM2Q96JY6 352 aa8.51□□□□□ -1.05
HERPUD1-209ENST00000564678 TRIM34Q9BYJ4 488 aa8.51□□□□□ -1.05
HERPUD1-209ENST00000564678 SUGT1Q9Y2Z0 365 aa8.51□□□□□ -1.05
HERPUD1-209ENST00000564678 ARAP2Q8WZ64 1704 aa8.5□□□□□ -1.05
HERPUD1-209ENST00000564678 ZMYM6O95789 1325 aa8.5□□□□□ -1.05
HERPUD1-209ENST00000564678 A0A0G2JS52 829 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms