RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 SGPL1O95470 568 aa9.29□□□□□ -0.92
VPS4A-203ENST00000564399 TFRCP02786 760 aaKnown RBP9.29□□□□□ -0.92
VPS4A-203ENST00000564399 MNX1P50219 401 aaPredicted RBP9.29□□□□□ -0.92
VPS4A-203ENST00000564399 FCGRTP55899 365 aa9.29□□□□□ -0.92
VPS4A-203ENST00000564399 PRKCZQ05513 592 aa9.29□□□□□ -0.92
VPS4A-203ENST00000564399 PPATQ06203 517 aa9.29□□□□□ -0.92
VPS4A-203ENST00000564399 DDX10Q13206 875 aaKnown RBP9.29□□□□□ -0.92
VPS4A-203ENST00000564399 MIGA2Q7L4E1 593 aa9.29□□□□□ -0.92
VPS4A-203ENST00000564399 TEKT1Q969V4 418 aa9.29□□□□□ -0.92
VPS4A-203ENST00000564399 FAM84BQ96KN1 310 aaPredicted RBP9.29□□□□□ -0.92
VPS4A-203ENST00000564399 ZNF341Q9BYN7 854 aa9.29□□□□□ -0.92
VPS4A-203ENST00000564399 UNC93B1Q9H1C4 597 aa9.29□□□□□ -0.92
VPS4A-203ENST00000564399 STAP2Q9UGK3 403 aa9.29□□□□□ -0.92
VPS4A-203ENST00000564399 INPP5BP32019 993 aa9.28□□□□□ -0.92
VPS4A-203ENST00000564399 HDLBPQ00341 1268 aaKnown RBP9.28□□□□□ -0.92
VPS4A-203ENST00000564399 GRIK5Q16478 980 aa9.28□□□□□ -0.92
VPS4A-203ENST00000564399 FAM83AQ86UY5 434 aa9.28□□□□□ -0.92
VPS4A-203ENST00000564399 SLAIN1Q8ND83 568 aa9.28□□□□□ -0.92
VPS4A-203ENST00000564399 TBC1D22AQ8WUA7 517 aa9.28□□□□□ -0.92
VPS4A-203ENST00000564399 PARK7Q99497 189 aaKnown RBP9.28□□□□□ -0.92
VPS4A-203ENST00000564399 ADCY3O60266 1144 aa9.27□□□□□ -0.93
VPS4A-203ENST00000564399 EPHA10Q5JZY3 1008 aa9.27□□□□□ -0.93
VPS4A-203ENST00000564399 DEFB118Q96PH6 123 aa9.27□□□□□ -0.93
VPS4A-203ENST00000564399 RNF216Q9NWF9 866 aaPredicted RBP9.27□□□□□ -0.93
VPS4A-203ENST00000564399 TAOK2Q9UL54 1235 aa9.27□□□□□ -0.93
VPS4A-203ENST00000564399 GABRQQ9UN88 632 aa9.27□□□□□ -0.93
VPS4A-203ENST00000564399 ADGRA2Q96PE1 1338 aa9.27□□□□□ -0.93
VPS4A-203ENST00000564399 ALPK3Q96L96 1907 aa9.27□□□□□ -0.93
VPS4A-203ENST00000564399 F6X3S4 739 aa9.26□□□□□ -0.93
VPS4A-203ENST00000564399 CYP2C8P10632 490 aa9.26□□□□□ -0.93
VPS4A-203ENST00000564399 BCRP11274 1271 aa9.26□□□□□ -0.93
VPS4A-203ENST00000564399 ELNP15502 786 aa9.26□□□□□ -0.93
VPS4A-203ENST00000564399 CAVIN4Q5BKX8 364 aa9.26□□□□□ -0.93
VPS4A-203ENST00000564399 FKBP1CQ5VVH2 108 aa9.26□□□□□ -0.93
VPS4A-203ENST00000564399 DEFB123Q8N688 67 aa9.26□□□□□ -0.93
VPS4A-203ENST00000564399 ZDHHC15Q96MV8 337 aa9.26□□□□□ -0.93
VPS4A-203ENST00000564399 PUS3Q9BZE2 481 aaKnown RBP9.26□□□□□ -0.93
VPS4A-203ENST00000564399 C9orf78Q9NZ63 289 aaPredicted RBP9.26□□□□□ -0.93
VPS4A-203ENST00000564399 KCNH4Q9UQ05 1017 aa9.26□□□□□ -0.93
VPS4A-203ENST00000564399 MAST3O60307 1309 aa9.26□□□□□ -0.93
VPS4A-203ENST00000564399 COL6A3P12111 3177 aa9.26□□□□□ -0.93
VPS4A-203ENST00000564399 GRM8O00222 908 aa9.25□□□□□ -0.93
VPS4A-203ENST00000564399 TNPO2O14787 897 aaKnown RBP9.25□□□□□ -0.93
VPS4A-203ENST00000564399 INHAP05111 366 aa9.25□□□□□ -0.93
VPS4A-203ENST00000564399 FLT3LGP49771 235 aa9.25□□□□□ -0.93
VPS4A-203ENST00000564399 BCAMP50895 628 aa9.25□□□□□ -0.93
VPS4A-203ENST00000564399 TCP10Q12799 353 aa9.25□□□□□ -0.93
VPS4A-203ENST00000564399 BEND3Q5T5X7 828 aa9.25□□□□□ -0.93
VPS4A-203ENST00000564399 APOBEC3HQ6NTF7 200 aaKnown RBP9.25□□□□□ -0.93
VPS4A-203ENST00000564399 Q7L0L9 218 aa9.25□□□□□ -0.93
VPS4A-203ENST00000564399 NECAB2Q7Z6G3 386 aa9.25□□□□□ -0.93
VPS4A-203ENST00000564399 FBXO33Q7Z6M2 555 aa9.25□□□□□ -0.93
VPS4A-203ENST00000564399 C7orf61Q8IZ16 206 aa9.25□□□□□ -0.93
VPS4A-203ENST00000564399 PAWRQ96IZ0 340 aaKnown RBP9.25□□□□□ -0.93
VPS4A-203ENST00000564399 MRIQ9BWK5 157 aa9.25□□□□□ -0.93
VPS4A-203ENST00000564399 ZMYND8Q9ULU4 1186 aaPredicted RBP9.25□□□□□ -0.93
VPS4A-203ENST00000564399 RPAP1Q9BWH6 1393 aaPredicted RBP9.24□□□□□ -0.93
VPS4A-203ENST00000564399 CXCL11O14625 94 aa9.24□□□□□ -0.93
VPS4A-203ENST00000564399 CAPN2P17655 700 aa9.24□□□□□ -0.93
VPS4A-203ENST00000564399 HOXD11P31277 338 aaPredicted RBP9.24□□□□□ -0.93
VPS4A-203ENST00000564399 ZEB1P37275 1124 aaPredicted RBP9.24□□□□□ -0.93
VPS4A-203ENST00000564399 MOGSQ13724 837 aa9.24□□□□□ -0.93
VPS4A-203ENST00000564399 METTL24Q5JXM2 366 aa9.24□□□□□ -0.93
VPS4A-203ENST00000564399 GPAT2Q6NUI2 795 aa9.24□□□□□ -0.93
VPS4A-203ENST00000564399 HHIPL2Q6UWX4 724 aa9.24□□□□□ -0.93
VPS4A-203ENST00000564399 GADL1Q6ZQY3 521 aa9.24□□□□□ -0.93
VPS4A-203ENST00000564399 PXYLP1Q8TE99 480 aa9.24□□□□□ -0.93
VPS4A-203ENST00000564399 FAM151AQ8WW52 585 aa9.24□□□□□ -0.93
VPS4A-203ENST00000564399 ZNF112Q9UJU3 913 aa9.24□□□□□ -0.93
VPS4A-203ENST00000564399 MYH13Q9UKX3 1938 aa9.24□□□□□ -0.93
VPS4A-203ENST00000564399 MROH5Q6ZUA9 1318 aa9.24□□□□□ -0.93
VPS4A-203ENST00000564399 BMP8BP34820 402 aa9.23□□□□□ -0.93
VPS4A-203ENST00000564399 NOL9Q5SY16 702 aaKnown RBP9.23□□□□□ -0.93
VPS4A-203ENST00000564399 GPR153Q6NV75 609 aa9.23□□□□□ -0.93
VPS4A-203ENST00000564399 FASTKD5Q7L8L6 764 aaKnown RBP9.23□□□□□ -0.93
VPS4A-203ENST00000564399 SMCR8Q8TEV9 937 aaPredicted RBP9.23□□□□□ -0.93
VPS4A-203ENST00000564399 DIS3LQ8TF46 1054 aaKnown RBP9.23□□□□□ -0.93
VPS4A-203ENST00000564399 COA7Q96BR5 231 aa9.23□□□□□ -0.93
VPS4A-203ENST00000564399 GDF15Q99988 308 aa9.23□□□□□ -0.93
VPS4A-203ENST00000564399 STXBP5LQ9Y2K9 1186 aa9.23□□□□□ -0.93
VPS4A-203ENST00000564399 SUGT1Q9Y2Z0 365 aa9.23□□□□□ -0.93
VPS4A-203ENST00000564399 SYN1P17600 705 aa9.22□□□□□ -0.93
VPS4A-203ENST00000564399 IRF5Q13568 498 aa9.22□□□□□ -0.93
VPS4A-203ENST00000564399 SLC4A10Q6U841 1118 aa9.22□□□□□ -0.93
VPS4A-203ENST00000564399 WWC1Q8IX03 1113 aa9.22□□□□□ -0.93
VPS4A-203ENST00000564399 SUCLG2Q96I99 432 aa9.22□□□□□ -0.93
VPS4A-203ENST00000564399 CRISPLD2Q9H0B8 497 aa9.22□□□□□ -0.93
VPS4A-203ENST00000564399 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.22□□□□□ -0.93
VPS4A-203ENST00000564399 PRKRIP1Q9H875 184 aaPredicted RBP9.22□□□□□ -0.93
VPS4A-203ENST00000564399 PAK6Q9NQU5 681 aaPredicted RBP9.22□□□□□ -0.93
VPS4A-203ENST00000564399 PICK1Q9NRD5 415 aa9.22□□□□□ -0.93
VPS4A-203ENST00000564399 MTMR10Q9NXD2 777 aa9.22□□□□□ -0.93
VPS4A-203ENST00000564399 ZHX2Q9Y6X8 837 aa9.22□□□□□ -0.93
VPS4A-203ENST00000564399 PTPRFP10586 1907 aa9.21□□□□□ -0.93
VPS4A-203ENST00000564399 A0A0G2JLL6 359 aaPredicted RBP9.21□□□□□ -0.94
VPS4A-203ENST00000564399 VAMP4O75379 141 aa9.21□□□□□ -0.94
VPS4A-203ENST00000564399 ALDH1L1O75891 902 aa9.21□□□□□ -0.94
VPS4A-203ENST00000564399 PDE8BO95263 885 aa9.21□□□□□ -0.94
VPS4A-203ENST00000564399 IFIT1P09914 478 aaKnown RBP9.21□□□□□ -0.94
VPS4A-203ENST00000564399 MAGEA10P43363 369 aaPredicted RBP9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms