RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 ZNF296Q8WUU4 475 aaPredicted RBP12.74□□□□□ -0.37
CLK3-205ENST00000561673 ELP3Q9H9T3 547 aa12.74□□□□□ -0.37
CLK3-205ENST00000561673 AKAP11Q9UKA4 1901 aa12.74□□□□□ -0.37
CLK3-205ENST00000561673 GPR25O00155 361 aa12.73□□□□□ -0.37
CLK3-205ENST00000561673 G3BP1Q13283 466 aaKnown RBP eCLIP12.73□□□□□ -0.37
CLK3-205ENST00000561673 RASGRF1Q13972 1273 aa12.73□□□□□ -0.37
CLK3-205ENST00000561673 VGLL4Q14135 290 aa12.73□□□□□ -0.37
CLK3-205ENST00000561673 FTSJ3Q8IY81 847 aaKnown RBP12.73□□□□□ -0.37
CLK3-205ENST00000561673 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.73□□□□□ -0.37
CLK3-205ENST00000561673 OPTNQ96CV9 577 aa12.73□□□□□ -0.37
CLK3-205ENST00000561673 NEUROD6Q96NK8 337 aa12.73□□□□□ -0.37
CLK3-205ENST00000561673 CFHR5Q9BXR6 569 aa12.73□□□□□ -0.37
CLK3-205ENST00000561673 IGF2BP3O00425 579 aaKnown RBP eCLIP12.72□□□□□ -0.37
CLK3-205ENST00000561673 ZBTB7BO15156 539 aaPredicted RBP12.72□□□□□ -0.37
CLK3-205ENST00000561673 ALDH1A1P00352 501 aa12.72□□□□□ -0.37
CLK3-205ENST00000561673 ATP8B2P98198 1209 aa12.72□□□□□ -0.37
CLK3-205ENST00000561673 POLA2Q14181 598 aa12.72□□□□□ -0.37
CLK3-205ENST00000561673 MVPQ14764 893 aaKnown RBP12.72□□□□□ -0.37
CLK3-205ENST00000561673 NOM1Q5C9Z4 860 aaKnown RBP12.72□□□□□ -0.37
CLK3-205ENST00000561673 CTU1Q7Z7A3 348 aaKnown RBP12.72□□□□□ -0.37
CLK3-205ENST00000561673 ITPRIPQ8IWB1 547 aa12.72□□□□□ -0.37
CLK3-205ENST00000561673 ZGPATQ8N5A5 531 aaKnown RBP12.72□□□□□ -0.37
CLK3-205ENST00000561673 PTPN18Q99952 460 aa12.72□□□□□ -0.37
CLK3-205ENST00000561673 USP40Q9NVE5 1235 aa12.72□□□□□ -0.37
CLK3-205ENST00000561673 PDS5AQ29RF7 1337 aaKnown RBP12.71□□□□□ -0.37
CLK3-205ENST00000561673 TESPA1A2RU30 521 aaPredicted RBP12.71□□□□□ -0.37
CLK3-205ENST00000561673 TCP10Q12799 353 aa12.71□□□□□ -0.37
CLK3-205ENST00000561673 NFIAQ12857 509 aa12.71□□□□□ -0.37
CLK3-205ENST00000561673 MIGA2Q7L4E1 593 aa12.71□□□□□ -0.37
CLK3-205ENST00000561673 SSH3Q8TE77 659 aa12.71□□□□□ -0.37
CLK3-205ENST00000561673 FAM151AQ8WW52 585 aa12.71□□□□□ -0.37
CLK3-205ENST00000561673 ZKSCAN4Q969J2 545 aaPredicted RBP12.71□□□□□ -0.37
CLK3-205ENST00000561673 MS4A4AQ96JQ5 239 aa12.71□□□□□ -0.37
CLK3-205ENST00000561673 C1orf115Q9H7X2 142 aa12.71□□□□□ -0.37
CLK3-205ENST00000561673 FAM198AQ9UFP1 575 aa12.71□□□□□ -0.37
CLK3-205ENST00000561673 ABCF2Q9UG63 623 aa12.71□□□□□ -0.37
CLK3-205ENST00000561673 CSADQ9Y600 493 aa12.71□□□□□ -0.37
CLK3-205ENST00000561673 FKTNO75072 461 aa12.7□□□□□ -0.38
CLK3-205ENST00000561673 GORABQ5T7V8 394 aa12.7□□□□□ -0.38
CLK3-205ENST00000561673 DZIP1Q86YF9 867 aaKnown RBP12.7□□□□□ -0.38
CLK3-205ENST00000561673 ZFPM1Q8IX07 1006 aa12.7□□□□□ -0.38
CLK3-205ENST00000561673 HOOK2Q96ED9 719 aa12.7□□□□□ -0.38
CLK3-205ENST00000561673 FAM163AQ96GL9 167 aaPredicted RBP12.7□□□□□ -0.38
CLK3-205ENST00000561673 WRNIP1Q96S55 665 aa12.7□□□□□ -0.38
CLK3-205ENST00000561673 HMG20BQ9P0W2 317 aa12.7□□□□□ -0.38
CLK3-205ENST00000561673 GAKO14976 1311 aa12.69□□□□□ -0.38
CLK3-205ENST00000561673 DCAF15Q66K64 600 aa12.69□□□□□ -0.38
CLK3-205ENST00000561673 SPTY2D1Q68D10 685 aaPredicted RBP12.69□□□□□ -0.38
CLK3-205ENST00000561673 OTUD7BQ6GQQ9 843 aa12.69□□□□□ -0.38
CLK3-205ENST00000561673 PI16Q6UXB8 463 aa12.69□□□□□ -0.38
CLK3-205ENST00000561673 SPATA5Q8NB90 893 aa12.69□□□□□ -0.38
CLK3-205ENST00000561673 PANK1Q8TE04 598 aa12.69□□□□□ -0.38
CLK3-205ENST00000561673 OTUD5Q96G74 571 aa12.69□□□□□ -0.38
CLK3-205ENST00000561673 SNCAIPQ9Y6H5 919 aa12.69□□□□□ -0.38
CLK3-205ENST00000561673 HTTP42858 3142 aa12.69□□□□□ -0.38
CLK3-205ENST00000561673 RPAP1Q9BWH6 1393 aaPredicted RBP12.69□□□□□ -0.38
CLK3-205ENST00000561673 SPDYE5A6NIY4 337 aa12.68□□□□□ -0.38
CLK3-205ENST00000561673 SURF6O75683 361 aaKnown RBP12.68□□□□□ -0.38
CLK3-205ENST00000561673 ARID4AP29374 1257 aaPredicted RBP12.68□□□□□ -0.38
CLK3-205ENST00000561673 RGS19P49795 217 aa12.68□□□□□ -0.38
CLK3-205ENST00000561673 GTF2A2P52657 109 aa12.68□□□□□ -0.38
CLK3-205ENST00000561673 MECOMQ03112 1051 aa12.68□□□□□ -0.38
CLK3-205ENST00000561673 CRHR2Q13324 411 aa12.68□□□□□ -0.38
CLK3-205ENST00000561673 PKN2Q16513 984 aaKnown RBP12.68□□□□□ -0.38
CLK3-205ENST00000561673 TBC1D9Q6ZT07 1266 aa12.68□□□□□ -0.38
CLK3-205ENST00000561673 ERICH6Q7L0X2 663 aa12.68□□□□□ -0.38
CLK3-205ENST00000561673 SLF2Q8IX21 1173 aa12.68□□□□□ -0.38
CLK3-205ENST00000561673 ZNF384Q8TF68 577 aa12.68□□□□□ -0.38
CLK3-205ENST00000561673 BRI3BPQ8WY22 251 aa12.68□□□□□ -0.38
CLK3-205ENST00000561673 IDI2Q9BXS1 227 aa12.68□□□□□ -0.38
CLK3-205ENST00000561673 ZNF341Q9BYN7 854 aa12.68□□□□□ -0.38
CLK3-205ENST00000561673 GPR108Q9NPR9 543 aa12.68□□□□□ -0.38
CLK3-205ENST00000561673 ZNF112Q9UJU3 913 aa12.68□□□□□ -0.38
CLK3-205ENST00000561673 CENPFP49454 3210 aa12.68□□□□□ -0.38
CLK3-205ENST00000561673 CCL15-CCL14A0A0B4J2E2 113 aa12.67□□□□□ -0.38
CLK3-205ENST00000561673 INPP5BP32019 993 aa12.67□□□□□ -0.38
CLK3-205ENST00000561673 MCAMP43121 646 aa12.67□□□□□ -0.38
CLK3-205ENST00000561673 RGS3P49796 1198 aa12.67□□□□□ -0.38
CLK3-205ENST00000561673 OS9Q13438 667 aaPredicted RBP12.67□□□□□ -0.38
CLK3-205ENST00000561673 CCL15Q16663 113 aa12.67□□□□□ -0.38
CLK3-205ENST00000561673 TNNI3KQ59H18 835 aa12.67□□□□□ -0.38
CLK3-205ENST00000561673 ERO1BQ86YB8 467 aa12.67□□□□□ -0.38
CLK3-205ENST00000561673 HPS5Q9UPZ3 1129 aa12.67□□□□□ -0.38
CLK3-205ENST00000561673 NOP58Q9Y2X3 529 aaKnown RBP12.67□□□□□ -0.38
CLK3-205ENST00000561673 FPGT-TNNI3KV9GXZ4 949 aa12.67□□□□□ -0.38
CLK3-205ENST00000561673 MYH13Q9UKX3 1938 aa12.66□□□□□ -0.38
CLK3-205ENST00000561673 MROH7-TTC4A0A0A0MT08 1334 aa12.66□□□□□ -0.38
CLK3-205ENST00000561673 GPR75-ASB3A0A0A6YYF3 556 aa12.66□□□□□ -0.38
CLK3-205ENST00000561673 IRF6O14896 467 aa12.66□□□□□ -0.38
CLK3-205ENST00000561673 WDHD1O75717 1129 aaPredicted RBP12.66□□□□□ -0.38
CLK3-205ENST00000561673 UQCRFS1P1P0C7P4 283 aa12.66□□□□□ -0.38
CLK3-205ENST00000561673 BTDP43251 543 aa12.66□□□□□ -0.38
CLK3-205ENST00000561673 SH3BP5LQ7L8J4 393 aa12.66□□□□□ -0.38
CLK3-205ENST00000561673 NSUN4Q96CB9 384 aaKnown RBP12.66□□□□□ -0.38
CLK3-205ENST00000561673 DBNDD2Q9BQY9 259 aa12.66□□□□□ -0.38
CLK3-205ENST00000561673 OTOFQ9HC10 1997 aa12.66□□□□□ -0.38
CLK3-205ENST00000561673 ENTPD3O75355 529 aa12.65□□□□□ -0.38
CLK3-205ENST00000561673 CETPP11597 493 aa12.65□□□□□ -0.38
CLK3-205ENST00000561673 RHBDL3P58872 404 aa12.65□□□□□ -0.38
CLK3-205ENST00000561673 GSTO1P78417 241 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 162.9 ms