RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 SNCAIPQ9Y6H5 919 aa17.41■□□□□ 0.38
LDLR-213ENST00000560502 RFX5P48382 616 aaPredicted RBP17.4■□□□□ 0.38
LDLR-213ENST00000560502 TAF1CQ15572 869 aaPredicted RBP17.4■□□□□ 0.38
LDLR-213ENST00000560502 FAM43AQ8N2R8 423 aa17.4■□□□□ 0.38
LDLR-213ENST00000560502 OTUD5Q96G74 571 aa17.4■□□□□ 0.38
LDLR-213ENST00000560502 CCDC136Q96JN2 1154 aa17.4■□□□□ 0.38
LDLR-213ENST00000560502 MAST3O60307 1309 aa17.4■□□□□ 0.38
LDLR-213ENST00000560502 PUM3Q15397 648 aaKnown RBP17.39■□□□□ 0.37
LDLR-213ENST00000560502 C20orf194Q5TEA3 1177 aa17.39■□□□□ 0.37
LDLR-213ENST00000560502 FTSJ3Q8IY81 847 aaKnown RBP17.39■□□□□ 0.37
LDLR-213ENST00000560502 ZFYVE28Q9HCC9 887 aa17.39■□□□□ 0.37
LDLR-213ENST00000560502 EYA2O00167 538 aa17.38■□□□□ 0.37
LDLR-213ENST00000560502 FRAT2O75474 233 aaPredicted RBP17.38■□□□□ 0.37
LDLR-213ENST00000560502 HHIPL2Q6UWX4 724 aa17.38■□□□□ 0.37
LDLR-213ENST00000560502 ERO1BQ86YB8 467 aa17.38■□□□□ 0.37
LDLR-213ENST00000560502 ZNF333Q96JL9 665 aa17.38■□□□□ 0.37
LDLR-213ENST00000560502 CHMP4BQ9H444 224 aaKnown RBP17.38■□□□□ 0.37
LDLR-213ENST00000560502 ZCCHC17Q9NP64 241 aaKnown RBP17.38■□□□□ 0.37
LDLR-213ENST00000560502 TMOD2Q9NZR1 351 aa17.38■□□□□ 0.37
LDLR-213ENST00000560502 CENPFP49454 3210 aa17.37■□□□□ 0.37
LDLR-213ENST00000560502 IFIT1P09914 478 aaKnown RBP17.37■□□□□ 0.37
LDLR-213ENST00000560502 HOOK2Q96ED9 719 aa17.37■□□□□ 0.37
LDLR-213ENST00000560502 WRNIP1Q96S55 665 aa17.37■□□□□ 0.37
LDLR-213ENST00000560502 API5Q9BZZ5 524 aaKnown RBP17.37■□□□□ 0.37
LDLR-213ENST00000560502 CETPP11597 493 aa17.36■□□□□ 0.37
LDLR-213ENST00000560502 TRIM27P14373 513 aa17.36■□□□□ 0.37
LDLR-213ENST00000560502 PPIL2Q13356 520 aa17.36■□□□□ 0.37
LDLR-213ENST00000560502 ATG9AQ7Z3C6 839 aa17.36■□□□□ 0.37
LDLR-213ENST00000560502 ZKSCAN4Q969J2 545 aaPredicted RBP17.36■□□□□ 0.37
LDLR-213ENST00000560502 NOB1Q9ULX3 412 aaKnown RBP17.36■□□□□ 0.37
LDLR-213ENST00000560502 PTCH2Q9Y6C5 1203 aa17.36■□□□□ 0.37
LDLR-213ENST00000560502 DOCK2Q92608 1830 aa17.35■□□□□ 0.37
LDLR-213ENST00000560502 AK9Q5TCS8 1911 aa17.35■□□□□ 0.37
LDLR-213ENST00000560502 MKI67P46013 3256 aaKnown RBP17.35■□□□□ 0.37
LDLR-213ENST00000560502 BTBD19C9JJ37 291 aa17.35■□□□□ 0.37
LDLR-213ENST00000560502 IRF6O14896 467 aa17.35■□□□□ 0.37
LDLR-213ENST00000560502 TLR2O60603 784 aa17.35■□□□□ 0.37
LDLR-213ENST00000560502 SLC5A1P13866 664 aa17.35■□□□□ 0.37
LDLR-213ENST00000560502 EN2P19622 333 aaPredicted RBP17.35■□□□□ 0.37
LDLR-213ENST00000560502 MVPQ14764 893 aaKnown RBP17.35■□□□□ 0.37
LDLR-213ENST00000560502 DCAF15Q66K64 600 aa17.35■□□□□ 0.37
LDLR-213ENST00000560502 WDR66Q8TBY9 1149 aa17.35■□□□□ 0.37
LDLR-213ENST00000560502 LPIN2Q92539 896 aa17.35■□□□□ 0.37
LDLR-213ENST00000560502 SNAPC2Q13487 334 aa17.34■□□□□ 0.37
LDLR-213ENST00000560502 ARHGEF6Q15052 776 aa17.34■□□□□ 0.37
LDLR-213ENST00000560502 GCC1Q96CN9 775 aa17.34■□□□□ 0.37
LDLR-213ENST00000560502 DDX19BQ9UMR2 479 aa17.34■□□□□ 0.37
LDLR-213ENST00000560502 DAGLAQ9Y4D2 1042 aa17.34■□□□□ 0.37
LDLR-213ENST00000560502 CEP290O15078 2479 aa17.33■□□□□ 0.37
LDLR-213ENST00000560502 BRCA2P51587 3418 aa17.33■□□□□ 0.37
LDLR-213ENST00000560502 LACTBP83111 547 aaPredicted RBP17.33■□□□□ 0.36
LDLR-213ENST00000560502 PANK1Q8TE04 598 aa17.33■□□□□ 0.36
LDLR-213ENST00000560502 FAM151AQ8WW52 585 aa17.33■□□□□ 0.36
LDLR-213ENST00000560502 ZNF341Q9BYN7 854 aa17.33■□□□□ 0.36
LDLR-213ENST00000560502 ARHGAP39Q9C0H5 1083 aa17.33■□□□□ 0.36
LDLR-213ENST00000560502 ZNF112Q9UJU3 913 aa17.33■□□□□ 0.36
LDLR-213ENST00000560502 MYH2Q9UKX2 1941 aa17.33■□□□□ 0.36
LDLR-213ENST00000560502 ADGRA2Q96PE1 1338 aa17.32■□□□□ 0.36
LDLR-213ENST00000560502 ZBTB22O15209 634 aa17.32■□□□□ 0.36
LDLR-213ENST00000560502 CIAO1O76071 339 aa17.32■□□□□ 0.36
LDLR-213ENST00000560502 INPP5BP32019 993 aa17.32■□□□□ 0.36
LDLR-213ENST00000560502 PPATQ06203 517 aa17.32■□□□□ 0.36
LDLR-213ENST00000560502 SLC9C1Q4G0N8 1177 aa17.32■□□□□ 0.36
LDLR-213ENST00000560502 B4GALNT3Q6L9W6 998 aa17.32■□□□□ 0.36
LDLR-213ENST00000560502 CDC42EP5Q6NZY7 148 aa17.32■□□□□ 0.36
LDLR-213ENST00000560502 FBXO3Q9UK99 471 aa17.32■□□□□ 0.36
LDLR-213ENST00000560502 SALL1Q9NSC2 1324 aa17.31■□□□□ 0.36
LDLR-213ENST00000560502 WDHD1O75717 1129 aaPredicted RBP17.31■□□□□ 0.36
LDLR-213ENST00000560502 PRDX5P30044 214 aa17.31■□□□□ 0.36
LDLR-213ENST00000560502 NFIAQ12857 509 aa17.31■□□□□ 0.36
LDLR-213ENST00000560502 DIXDC1Q155Q3 683 aa17.31■□□□□ 0.36
LDLR-213ENST00000560502 MIGA2Q7L4E1 593 aa17.31■□□□□ 0.36
LDLR-213ENST00000560502 CLUAP1Q96AJ1 413 aa17.31■□□□□ 0.36
LDLR-213ENST00000560502 TMEM106CQ9BVX2 250 aa17.31■□□□□ 0.36
LDLR-213ENST00000560502 KCNH4Q9UQ05 1017 aa17.31■□□□□ 0.36
LDLR-213ENST00000560502 COG6Q9Y2V7 657 aa17.31■□□□□ 0.36
LDLR-213ENST00000560502 PTPRFP10586 1907 aa17.31■□□□□ 0.36
LDLR-213ENST00000560502 RFX7Q2KHR2 1363 aa17.3■□□□□ 0.36
LDLR-213ENST00000560502 ATRNL1Q5VV63 1379 aa17.3■□□□□ 0.36
LDLR-213ENST00000560502 GNRH1P01148 92 aa17.3■□□□□ 0.36
LDLR-213ENST00000560502 RLBP1P12271 317 aa17.3■□□□□ 0.36
LDLR-213ENST00000560502 ATP2B3Q16720 1220 aa17.3■□□□□ 0.36
LDLR-213ENST00000560502 NOL9Q5SY16 702 aaKnown RBP17.3■□□□□ 0.36
LDLR-213ENST00000560502 C17orf99Q6UX52 265 aa17.3■□□□□ 0.36
LDLR-213ENST00000560502 ANKRD23Q86SG2 305 aa17.3■□□□□ 0.36
LDLR-213ENST00000560502 NBPF11Q86T75 865 aa17.3■□□□□ 0.36
LDLR-213ENST00000560502 FAM198AQ9UFP1 575 aa17.3■□□□□ 0.36
LDLR-213ENST00000560502 MGAMO43451 1857 aa17.29■□□□□ 0.36
LDLR-213ENST00000560502 CTGFP29279 349 aa17.29■□□□□ 0.36
LDLR-213ENST00000560502 MOGSQ13724 837 aa17.29■□□□□ 0.36
LDLR-213ENST00000560502 HABP4Q5JVS0 413 aaKnown RBP17.29■□□□□ 0.36
LDLR-213ENST00000560502 SEMA3EO15041 775 aa17.28■□□□□ 0.36
LDLR-213ENST00000560502 UBTFL1P0CB47 393 aaPredicted RBP17.28■□□□□ 0.36
LDLR-213ENST00000560502 PRMT2P55345 433 aa17.28■□□□□ 0.36
LDLR-213ENST00000560502 TCP10Q12799 353 aa17.28■□□□□ 0.36
LDLR-213ENST00000560502 KIF22Q14807 665 aa17.28■□□□□ 0.36
LDLR-213ENST00000560502 SIL1Q9H173 461 aa17.28■□□□□ 0.36
LDLR-213ENST00000560502 DOCK1Q14185 1865 aa17.28■□□□□ 0.36
LDLR-213ENST00000560502 PHIPQ8WWQ0 1821 aa17.28■□□□□ 0.36
LDLR-213ENST00000560502 LDHBP07195 334 aaKnown RBP17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms