RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 CDK11BP21127 795 aaKnown RBP14.25□□□□□ -0.13
LDLR-205ENST00000557933 ETF1P62495 437 aaKnown RBP14.25□□□□□ -0.13
LDLR-205ENST00000557933 LONRF3Q496Y0 759 aa14.25□□□□□ -0.13
LDLR-205ENST00000557933 AXDND1Q5T1B0 1012 aaPredicted RBP14.25□□□□□ -0.13
LDLR-205ENST00000557933 WWC2Q6AWC2 1192 aa14.25□□□□□ -0.13
LDLR-205ENST00000557933 KLHL10Q6JEL2 608 aa14.25□□□□□ -0.13
LDLR-205ENST00000557933 LLPHQ9BRT6 129 aaKnown RBP14.25□□□□□ -0.13
LDLR-205ENST00000557933 OSBPL5Q9H0X9 879 aaPredicted RBP14.25□□□□□ -0.13
LDLR-205ENST00000557933 LZTFL1Q9NQ48 299 aa14.25□□□□□ -0.13
LDLR-205ENST00000557933 RNF216Q9NWF9 866 aaPredicted RBP14.25□□□□□ -0.13
LDLR-205ENST00000557933 WDR17Q8IZU2 1322 aa14.24□□□□□ -0.13
LDLR-205ENST00000557933 hCG_1642624A0A1W2PR95 340 aa14.24□□□□□ -0.13
LDLR-205ENST00000557933 NBPF26B4DH59 902 aa14.24□□□□□ -0.13
LDLR-205ENST00000557933 SYCP1Q15431 976 aa14.24□□□□□ -0.13
LDLR-205ENST00000557933 NBPF14Q5TI25 921 aa14.24□□□□□ -0.13
LDLR-205ENST00000557933 NBPF10Q6P3W6 841 aaKnown RBP14.24□□□□□ -0.13
LDLR-205ENST00000557933 SHC4Q6S5L8 630 aa14.24□□□□□ -0.13
LDLR-205ENST00000557933 VPS37DQ86XT2 251 aa14.24□□□□□ -0.13
LDLR-205ENST00000557933 NBPF15Q8N660 670 aa14.24□□□□□ -0.13
LDLR-205ENST00000557933 STX17P56962 302 aa14.24□□□□□ -0.13
LDLR-205ENST00000557933 FOXO4P98177 505 aa14.24□□□□□ -0.13
LDLR-205ENST00000557933 KIF23Q02241 960 aaPredicted RBP14.24□□□□□ -0.13
LDLR-205ENST00000557933 TMCO3Q6UWJ1 677 aa14.24□□□□□ -0.13
LDLR-205ENST00000557933 FAM89AQ96GI7 184 aa14.24□□□□□ -0.13
LDLR-205ENST00000557933 ALG1Q9BT22 464 aa14.24□□□□□ -0.13
LDLR-205ENST00000557933 PUF60Q9UHX1 559 aaKnown RBP14.24□□□□□ -0.13
LDLR-205ENST00000557933 B4E1Z4 1266 aa14.23□□□□□ -0.13
LDLR-205ENST00000557933 IDH1O75874 414 aaKnown RBP14.23□□□□□ -0.13
LDLR-205ENST00000557933 CAVIN2O95810 425 aa14.23□□□□□ -0.13
LDLR-205ENST00000557933 TOP1P11387 765 aaKnown RBP14.23□□□□□ -0.13
LDLR-205ENST00000557933 H2AFXP16104 143 aaPredicted RBP14.23□□□□□ -0.13
LDLR-205ENST00000557933 NLRP12P59046 1061 aa14.23□□□□□ -0.13
LDLR-205ENST00000557933 RRP12Q5JTH9 1297 aaKnown RBP14.23□□□□□ -0.13
LDLR-205ENST00000557933 TTC39AQ5SRH9 613 aa14.23□□□□□ -0.13
LDLR-205ENST00000557933 KCNJ14Q9UNX9 436 aa14.23□□□□□ -0.13
LDLR-205ENST00000557933 JCADQ9P266 1359 aa14.23□□□□□ -0.13
LDLR-205ENST00000557933 LRP6O75581 1613 aa14.23□□□□□ -0.13
LDLR-205ENST00000557933 CYP27B1O15528 508 aa14.23□□□□□ -0.13
LDLR-205ENST00000557933 HMGB1P09429 215 aaKnown RBP14.23□□□□□ -0.13
LDLR-205ENST00000557933 BMP6P22004 513 aa14.23□□□□□ -0.13
LDLR-205ENST00000557933 TRIM65Q6PJ69 517 aa14.23□□□□□ -0.13
LDLR-205ENST00000557933 STAMQ92783 540 aa14.23□□□□□ -0.13
LDLR-205ENST00000557933 SUGCTQ9HAC7 445 aa14.23□□□□□ -0.13
LDLR-205ENST00000557933 INTS13Q9NVM9 706 aa14.23□□□□□ -0.13
LDLR-205ENST00000557933 PCDHA5Q9Y5H7 936 aa14.23□□□□□ -0.13
LDLR-205ENST00000557933 SNRPA1P09661 255 aaKnown RBP14.22□□□□□ -0.13
LDLR-205ENST00000557933 PRR29P0C7W0 189 aa14.22□□□□□ -0.13
LDLR-205ENST00000557933 NFXL1Q6ZNB6 911 aa14.22□□□□□ -0.13
LDLR-205ENST00000557933 HELBQ8NG08 1087 aaPredicted RBP14.22□□□□□ -0.13
LDLR-205ENST00000557933 PHKG2P15735 406 aa14.22□□□□□ -0.13
LDLR-205ENST00000557933 GPTP24298 496 aa14.22□□□□□ -0.13
LDLR-205ENST00000557933 BMS1Q14692 1282 aaKnown RBP14.22□□□□□ -0.13
LDLR-205ENST00000557933 IMMTQ16891 758 aaKnown RBP14.22□□□□□ -0.13
LDLR-205ENST00000557933 USP49Q70CQ1 688 aa14.22□□□□□ -0.13
LDLR-205ENST00000557933 LRP10Q7Z4F1 713 aa14.22□□□□□ -0.13
LDLR-205ENST00000557933 SMYD4Q8IYR2 804 aaPredicted RBP14.22□□□□□ -0.13
LDLR-205ENST00000557933 SMARCE1Q969G3 411 aa14.22□□□□□ -0.13
LDLR-205ENST00000557933 HINFPQ9BQA5 517 aa14.22□□□□□ -0.13
LDLR-205ENST00000557933 CHMP4AQ9BY43 222 aa14.22□□□□□ -0.13
LDLR-205ENST00000557933 SH3TC1Q8TE82 1336 aa14.22□□□□□ -0.13
LDLR-205ENST00000557933 ANKRD65E5RJM6 399 aa14.21□□□□□ -0.13
LDLR-205ENST00000557933 CABP4P57796 275 aa14.21□□□□□ -0.13
LDLR-205ENST00000557933 FMR1Q06787 632 aaKnown RBP eCLIP14.21□□□□□ -0.136e-7■□□□□ 9.2
LDLR-205ENST00000557933 CCDC93Q567U6 631 aa14.21□□□□□ -0.13
LDLR-205ENST00000557933 TAF7LQ5H9L4 462 aa14.21□□□□□ -0.13
LDLR-205ENST00000557933 KRT40Q6A162 431 aa14.21□□□□□ -0.13
LDLR-205ENST00000557933 CYB5R4Q7L1T6 521 aa14.21□□□□□ -0.13
LDLR-205ENST00000557933 METTL16Q86W50 562 aaKnown RBP14.21□□□□□ -0.13
LDLR-205ENST00000557933 CCDC150Q8NCX0 1101 aa14.21□□□□□ -0.13
LDLR-205ENST00000557933 CERKQ8TCT0 537 aa14.21□□□□□ -0.13
LDLR-205ENST00000557933 KCNG4Q8TDN1 519 aa14.21□□□□□ -0.13
LDLR-205ENST00000557933 DSCC1Q9BVC3 393 aa14.21□□□□□ -0.13
LDLR-205ENST00000557933 L2HGDHQ9H9P8 463 aa14.21□□□□□ -0.13
LDLR-205ENST00000557933 HEG1Q9ULI3 1381 aa14.21□□□□□ -0.13
LDLR-205ENST00000557933 GPAA1O43292 621 aa14.21□□□□□ -0.13
LDLR-205ENST00000557933 PHACTR2O75167 634 aa14.21□□□□□ -0.13
LDLR-205ENST00000557933 GUCY1A2P33402 732 aa14.21□□□□□ -0.13
LDLR-205ENST00000557933 TBC1D10CQ8IV04 446 aa14.21□□□□□ -0.13
LDLR-205ENST00000557933 CNNM3Q8NE01 707 aa14.21□□□□□ -0.13
LDLR-205ENST00000557933 SAMSN1Q9NSI8 373 aaKnown RBP14.21□□□□□ -0.13
LDLR-205ENST00000557933 PARP3Q9Y6F1 533 aa14.21□□□□□ -0.13
LDLR-205ENST00000557933 PAPPAQ13219 1627 aa14.21□□□□□ -0.14
LDLR-205ENST00000557933 VWA3AA6NCI4 1184 aa14.21□□□□□ -0.14
LDLR-205ENST00000557933 ZNF213O14771 459 aa14.21□□□□□ -0.14
LDLR-205ENST00000557933 CAPN2P17655 700 aa14.21□□□□□ -0.14
LDLR-205ENST00000557933 TPM4P67936 248 aa14.21□□□□□ -0.14
LDLR-205ENST00000557933 REXO1L1PQ8IX06 675 aa14.21□□□□□ -0.14
LDLR-205ENST00000557933 ZNF274Q96GC6 653 aaPredicted RBP14.21□□□□□ -0.14
LDLR-205ENST00000557933 XAGE2Q96GT9 111 aa14.21□□□□□ -0.14
LDLR-205ENST00000557933 SEC31BQ9NQW1 1179 aa14.21□□□□□ -0.14
LDLR-205ENST00000557933 MEGF6O75095 1541 aa14.21□□□□□ -0.14
LDLR-205ENST00000557933 DISP2A7MBM2 1401 aa14.2□□□□□ -0.14
LDLR-205ENST00000557933 SLIT2O94813 1529 aa14.2□□□□□ -0.14
LDLR-205ENST00000557933 PDIA4P13667 645 aaKnown RBP14.2□□□□□ -0.14
LDLR-205ENST00000557933 OAS2P29728 719 aaKnown RBP14.2□□□□□ -0.14
LDLR-205ENST00000557933 MCM6Q14566 821 aa14.2□□□□□ -0.14
LDLR-205ENST00000557933 DHX58Q96C10 678 aa14.2□□□□□ -0.14
LDLR-205ENST00000557933 TIGD1Q96MW7 591 aa14.2□□□□□ -0.14
LDLR-205ENST00000557933 CARD10Q9BWT7 1032 aa14.2□□□□□ -0.14
LDLR-205ENST00000557933 SLC26A6Q9BXS9 759 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms