RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 IFIT1P09914 478 aaKnown RBP15.9■□□□□ 0.14
SHMT2-223ENST00000556689 ANKRD23Q86SG2 305 aa15.9■□□□□ 0.14
SHMT2-223ENST00000556689 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.9■□□□□ 0.14
SHMT2-223ENST00000556689 FAM151AQ8WW52 585 aa15.9■□□□□ 0.14
SHMT2-223ENST00000556689 DPF3Q92784 378 aa15.9■□□□□ 0.14
SHMT2-223ENST00000556689 SRRDQ9UH36 339 aa15.9■□□□□ 0.14
SHMT2-223ENST00000556689 CPA4Q9UI42 421 aa15.9■□□□□ 0.14
SHMT2-223ENST00000556689 PDHXO00330 501 aa15.89■□□□□ 0.13
SHMT2-223ENST00000556689 FMNL1O95466 1100 aaPredicted RBP15.89■□□□□ 0.13
SHMT2-223ENST00000556689 INPP5BP32019 993 aa15.89■□□□□ 0.13
SHMT2-223ENST00000556689 ANKRD44Q8N8A2 993 aa15.89■□□□□ 0.13
SHMT2-223ENST00000556689 NKX2-3Q8TAU0 364 aa15.89■□□□□ 0.13
SHMT2-223ENST00000556689 RAET1EQ8TD07 263 aa15.89■□□□□ 0.13
SHMT2-223ENST00000556689 OTOFQ9HC10 1997 aa15.89■□□□□ 0.13
SHMT2-223ENST00000556689 FGFR2P21802 821 aa15.88■□□□□ 0.13
SHMT2-223ENST00000556689 CTGFP29279 349 aa15.88■□□□□ 0.13
SHMT2-223ENST00000556689 MTFR1Q15390 333 aa15.88■□□□□ 0.13
SHMT2-223ENST00000556689 PUM3Q15397 648 aaKnown RBP15.88■□□□□ 0.13
SHMT2-223ENST00000556689 KLHDC4Q8TBB5 520 aa15.88■□□□□ 0.13
SHMT2-223ENST00000556689 WDR66Q8TBY9 1149 aa15.88■□□□□ 0.13
SHMT2-223ENST00000556689 TRIM47Q96LD4 638 aa15.88■□□□□ 0.13
SHMT2-223ENST00000556689 ZNF112Q9UJU3 913 aa15.88■□□□□ 0.13
SHMT2-223ENST00000556689 KIF16BQ96L93 1317 aa15.88■□□□□ 0.13
SHMT2-223ENST00000556689 OSBPP22059 807 aa15.87■□□□□ 0.13
SHMT2-223ENST00000556689 GRK4P32298 578 aa15.87■□□□□ 0.13
SHMT2-223ENST00000556689 TCP10Q12799 353 aa15.87■□□□□ 0.13
SHMT2-223ENST00000556689 KCNH4Q9UQ05 1017 aa15.87■□□□□ 0.13
SHMT2-223ENST00000556689 RPAP1Q9BWH6 1393 aaPredicted RBP15.87■□□□□ 0.13
SHMT2-223ENST00000556689 SLC5A1P13866 664 aa15.86■□□□□ 0.13
SHMT2-223ENST00000556689 CDC42EP5Q6NZY7 148 aa15.86■□□□□ 0.13
SHMT2-223ENST00000556689 BIN2Q9UBW5 565 aaPredicted RBP15.86■□□□□ 0.13
SHMT2-223ENST00000556689 ANP32CO43423 234 aa15.85■□□□□ 0.13
SHMT2-223ENST00000556689 GJB1P08034 283 aa15.85■□□□□ 0.13
SHMT2-223ENST00000556689 GJA8P48165 433 aa15.85■□□□□ 0.13
SHMT2-223ENST00000556689 CHRDL2Q6WN34 429 aa15.85■□□□□ 0.13
SHMT2-223ENST00000556689 LPIN2Q92539 896 aa15.85■□□□□ 0.13
SHMT2-223ENST00000556689 SHISA4Q96DD7 197 aa15.85■□□□□ 0.13
SHMT2-223ENST00000556689 USP44Q9H0E7 712 aa15.85■□□□□ 0.13
SHMT2-223ENST00000556689 DAGLAQ9Y4D2 1042 aa15.85■□□□□ 0.13
SHMT2-223ENST00000556689 MYPNQ86TC9 1320 aa15.85■□□□□ 0.13
SHMT2-223ENST00000556689 ARAP2Q8WZ64 1704 aa15.85■□□□□ 0.13
SHMT2-223ENST00000556689 CXCL11O14625 94 aa15.84■□□□□ 0.13
SHMT2-223ENST00000556689 CCL5P13501 91 aa15.84■□□□□ 0.13
SHMT2-223ENST00000556689 UBXN2AP68543 259 aa15.84■□□□□ 0.13
SHMT2-223ENST00000556689 MOGSQ13724 837 aa15.84■□□□□ 0.13
SHMT2-223ENST00000556689 NOL9Q5SY16 702 aaKnown RBP15.84■□□□□ 0.13
SHMT2-223ENST00000556689 MRPL50Q8N5N7 158 aaKnown RBP15.84■□□□□ 0.13
SHMT2-223ENST00000556689 PARK7Q99497 189 aaKnown RBP15.84■□□□□ 0.13
SHMT2-223ENST00000556689 HTATIP2Q9BUP3 242 aa15.84■□□□□ 0.13
SHMT2-223ENST00000556689 RNF208Q9H0X6 261 aa15.84■□□□□ 0.13
SHMT2-223ENST00000556689 USP40Q9NVE5 1235 aa15.84■□□□□ 0.13
SHMT2-223ENST00000556689 EYA2O00167 538 aa15.83■□□□□ 0.12
SHMT2-223ENST00000556689 LDHBP07195 334 aaKnown RBP15.83■□□□□ 0.12
SHMT2-223ENST00000556689 FCGRTP55899 365 aa15.83■□□□□ 0.12
SHMT2-223ENST00000556689 NFIAQ12857 509 aa15.83■□□□□ 0.12
SHMT2-223ENST00000556689 RBM27Q9P2N5 1060 aaKnown RBP15.83■□□□□ 0.12
SHMT2-223ENST00000556689 FAM198AQ9UFP1 575 aa15.83■□□□□ 0.12
SHMT2-223ENST00000556689 PTPRCP08575 1304 aa15.83■□□□□ 0.12
SHMT2-223ENST00000556689 ADGRA2Q96PE1 1338 aa15.83■□□□□ 0.12
SHMT2-223ENST00000556689 DIXDC1Q155Q3 683 aa15.82■□□□□ 0.12
SHMT2-223ENST00000556689 GPAT2Q6NUI2 795 aa15.82■□□□□ 0.12
SHMT2-223ENST00000556689 FASTKD5Q7L8L6 764 aaKnown RBP15.82■□□□□ 0.12
SHMT2-223ENST00000556689 UBE2Q1Q7Z7E8 422 aa15.82■□□□□ 0.12
SHMT2-223ENST00000556689 FAM9BQ8IZU0 186 aa15.82■□□□□ 0.12
SHMT2-223ENST00000556689 GNL3LQ9NVN8 582 aaKnown RBP15.82■□□□□ 0.12
SHMT2-223ENST00000556689 CYP2C8P10632 490 aa15.81■□□□□ 0.12
SHMT2-223ENST00000556689 BCRP11274 1271 aa15.81■□□□□ 0.12
SHMT2-223ENST00000556689 PRDX5P30044 214 aa15.81■□□□□ 0.12
SHMT2-223ENST00000556689 RFX5P48382 616 aaPredicted RBP15.81■□□□□ 0.12
SHMT2-223ENST00000556689 PRKCZQ05513 592 aa15.81■□□□□ 0.12
SHMT2-223ENST00000556689 ZFPM1Q8IX07 1006 aa15.81■□□□□ 0.12
SHMT2-223ENST00000556689 SLAIN1Q8ND83 568 aa15.81■□□□□ 0.12
SHMT2-223ENST00000556689 PICK1Q9NRD5 415 aa15.81■□□□□ 0.12
SHMT2-223ENST00000556689 NR2E3Q9Y5X4 410 aa15.81■□□□□ 0.12
SHMT2-223ENST00000556689 ZHX2Q9Y6X8 837 aa15.81■□□□□ 0.12
SHMT2-223ENST00000556689 PHF20L1A8MW92 1017 aa15.8■□□□□ 0.12
SHMT2-223ENST00000556689 ATG9AQ7Z3C6 839 aa15.8■□□□□ 0.12
SHMT2-223ENST00000556689 CEP126Q9P2H0 1117 aa15.8■□□□□ 0.12
SHMT2-223ENST00000556689 GABRQQ9UN88 632 aa15.8■□□□□ 0.12
SHMT2-223ENST00000556689 A0A0G2JLL6 359 aaPredicted RBP15.79■□□□□ 0.12
SHMT2-223ENST00000556689 SGPL1O95470 568 aa15.79■□□□□ 0.12
SHMT2-223ENST00000556689 PTPRAP18433 802 aa15.79■□□□□ 0.12
SHMT2-223ENST00000556689 PRRT2Q7Z6L0 340 aaPredicted RBP15.79■□□□□ 0.12
SHMT2-223ENST00000556689 SCYL3Q8IZE3 742 aa15.79■□□□□ 0.12
SHMT2-223ENST00000556689 U2AF1L4Q8WU68 220 aaKnown RBP15.79■□□□□ 0.12
SHMT2-223ENST00000556689 FBXO3Q9UK99 471 aa15.79■□□□□ 0.12
SHMT2-223ENST00000556689 DENND2AQ9ULE3 1009 aa15.79■□□□□ 0.12
SHMT2-223ENST00000556689 AFG3L2Q9Y4W6 797 aa15.79■□□□□ 0.12
SHMT2-223ENST00000556689 ZSWIM8A7E2V4 1837 aa15.79■□□□□ 0.12
SHMT2-223ENST00000556689 SZT2Q5T011 3432 aa15.78■□□□□ 0.12
SHMT2-223ENST00000556689 SALL1Q9NSC2 1324 aa15.78■□□□□ 0.12
SHMT2-223ENST00000556689 SEMA3EO15041 775 aa15.78■□□□□ 0.12
SHMT2-223ENST00000556689 ADCY3O60266 1144 aa15.78■□□□□ 0.12
SHMT2-223ENST00000556689 ENTPD3O75355 529 aa15.78■□□□□ 0.12
SHMT2-223ENST00000556689 CIAO1O76071 339 aa15.78■□□□□ 0.12
SHMT2-223ENST00000556689 CAPN2P17655 700 aa15.78■□□□□ 0.12
SHMT2-223ENST00000556689 ATP2B3Q16720 1220 aa15.78■□□□□ 0.12
SHMT2-223ENST00000556689 GADL1Q6ZQY3 521 aa15.78■□□□□ 0.12
SHMT2-223ENST00000556689 ZSCAN29Q8IWY8 852 aaPredicted RBP15.78■□□□□ 0.12
SHMT2-223ENST00000556689 SSH1Q8WYL5 1049 aa15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms