RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 RNASE1P07998 156 aaKnown RBP7.54□□□□□ -1.2
SCFD1-218ENST00000556256 GJD3Q8N144 294 aa7.54□□□□□ -1.2
SCFD1-218ENST00000556256 FAM181AQ8N9Y4 354 aa7.54□□□□□ -1.2
SCFD1-218ENST00000556256 FAM168AQ92567 244 aa7.54□□□□□ -1.2
SCFD1-218ENST00000556256 RC3H2Q9HBD1 1191 aaKnown RBP7.54□□□□□ -1.2
SCFD1-218ENST00000556256 CCDC87Q9NVE4 849 aa7.54□□□□□ -1.2
SCFD1-218ENST00000556256 ADAMTS6Q9UKP5 1117 aa7.54□□□□□ -1.2
SCFD1-218ENST00000556256 B3GALT4O96024 378 aa7.53□□□□□ -1.2
SCFD1-218ENST00000556256 SSFA2P28290 1259 aa7.53□□□□□ -1.2
SCFD1-218ENST00000556256 GALNT12Q8IXK2 581 aa7.53□□□□□ -1.2
SCFD1-218ENST00000556256 DDX54Q8TDD1 881 aaKnown RBP7.53□□□□□ -1.2
SCFD1-218ENST00000556256 NETO1Q8TDF5 533 aa7.53□□□□□ -1.2
SCFD1-218ENST00000556256 WDR18Q9BV38 432 aa7.53□□□□□ -1.2
SCFD1-218ENST00000556256 SYNGAP1Q96PV0 1343 aa7.52□□□□□ -1.2
SCFD1-218ENST00000556256 FAM87AP0C7U9 286 aa7.52□□□□□ -1.21
SCFD1-218ENST00000556256 PKN1Q16512 942 aa7.52□□□□□ -1.21
SCFD1-218ENST00000556256 TMEM40Q8WWA1 233 aa7.52□□□□□ -1.21
SCFD1-218ENST00000556256 CD96P40200 585 aa7.51□□□□□ -1.21
SCFD1-218ENST00000556256 CDK5R2Q13319 367 aa7.51□□□□□ -1.21
SCFD1-218ENST00000556256 PDE3AQ14432 1141 aa7.51□□□□□ -1.21
SCFD1-218ENST00000556256 KSR1Q8IVT5 923 aa7.51□□□□□ -1.21
SCFD1-218ENST00000556256 VAV3Q9UKW4 847 aa7.51□□□□□ -1.21
SCFD1-218ENST00000556256 U3KQE9 123 aa7.51□□□□□ -1.21
SCFD1-218ENST00000556256 FKBP4Q02790 459 aaKnown RBP eCLIP7.5□□□□□ -1.21
SCFD1-218ENST00000556256 LRRN4CLQ8ND94 238 aa7.5□□□□□ -1.21
SCFD1-218ENST00000556256 PI4K2BQ8TCG2 481 aa7.5□□□□□ -1.21
SCFD1-218ENST00000556256 ZNF576Q9H609 170 aa7.5□□□□□ -1.21
SCFD1-218ENST00000556256 PRKCQQ04759 706 aa7.49□□□□□ -1.21
SCFD1-218ENST00000556256 KIAA0319Q5VV43 1072 aa7.49□□□□□ -1.21
SCFD1-218ENST00000556256 WDR89Q96FK6 387 aaPredicted RBP7.49□□□□□ -1.21
SCFD1-218ENST00000556256 CRIM1Q9NZV1 1036 aa7.49□□□□□ -1.21
SCFD1-218ENST00000556256 TMPRSS2O15393 492 aa7.48□□□□□ -1.21
SCFD1-218ENST00000556256 LIG1P18858 919 aa7.48□□□□□ -1.21
SCFD1-218ENST00000556256 SF3B2Q13435 895 aaKnown RBP7.48□□□□□ -1.21
SCFD1-218ENST00000556256 USPL1Q5W0Q7 1092 aa7.48□□□□□ -1.21
SCFD1-218ENST00000556256 TMEM88BA6NKF7 163 aa7.47□□□□□ -1.21
SCFD1-218ENST00000556256 ITPKAP23677 461 aa7.47□□□□□ -1.21
SCFD1-218ENST00000556256 MESP2Q0VG99 397 aa7.47□□□□□ -1.21
SCFD1-218ENST00000556256 AP3B2Q13367 1082 aa7.47□□□□□ -1.21
SCFD1-218ENST00000556256 AOC3Q16853 763 aa7.47□□□□□ -1.21
SCFD1-218ENST00000556256 CCDC97Q96F63 343 aaPredicted RBP7.47□□□□□ -1.21
SCFD1-218ENST00000556256 FANCD2OSQ96PS1 177 aa7.47□□□□□ -1.21
SCFD1-218ENST00000556256 SLC38A3Q99624 504 aa7.47□□□□□ -1.21
SCFD1-218ENST00000556256 LEFTY1O75610 366 aa7.46□□□□□ -1.22
SCFD1-218ENST00000556256 IFI16Q16666 785 aaKnown RBP7.46□□□□□ -1.22
SCFD1-218ENST00000556256 SMYD4Q8IYR2 804 aaPredicted RBP7.46□□□□□ -1.22
SCFD1-218ENST00000556256 EHD4Q9H223 541 aa7.46□□□□□ -1.22
SCFD1-218ENST00000556256 CCDC86Q9H6F5 360 aaKnown RBP7.46□□□□□ -1.22
SCFD1-218ENST00000556256 PIDD1Q9HB75 910 aa7.46□□□□□ -1.22
SCFD1-218ENST00000556256 ANO2Q9NQ90 1003 aa7.46□□□□□ -1.22
SCFD1-218ENST00000556256 DISC1Q9NRI5 854 aa7.46□□□□□ -1.22
SCFD1-218ENST00000556256 KRTAP9-7A8MTY7 169 aa7.45□□□□□ -1.22
SCFD1-218ENST00000556256 SLFN14P0C7P3 912 aa7.45□□□□□ -1.22
SCFD1-218ENST00000556256 OXCT1P55809 520 aa7.45□□□□□ -1.22
SCFD1-218ENST00000556256 FAM84AQ96KN4 292 aa7.45□□□□□ -1.22
SCFD1-218ENST00000556256 KRTAP4-11Q9BYQ6 195 aa7.45□□□□□ -1.22
SCFD1-218ENST00000556256 ZC3H12CQ9C0D7 883 aaKnown RBP7.45□□□□□ -1.22
SCFD1-218ENST00000556256 ATXN3LQ9H3M9 355 aa7.45□□□□□ -1.22
SCFD1-218ENST00000556256 MKNK2Q9HBH9 465 aa7.45□□□□□ -1.22
SCFD1-218ENST00000556256 SERPINA10Q9UK55 444 aa7.45□□□□□ -1.22
SCFD1-218ENST00000556256 PLAGL2Q9UPG8 496 aa7.45□□□□□ -1.22
SCFD1-218ENST00000556256 ABL1P00519 1130 aa7.44□□□□□ -1.22
SCFD1-218ENST00000556256 ID3Q02535 119 aa7.44□□□□□ -1.22
SCFD1-218ENST00000556256 PHLDB3Q6NSJ2 640 aa7.44□□□□□ -1.22
SCFD1-218ENST00000556256 HRASLS5Q96KN8 279 aa7.44□□□□□ -1.22
SCFD1-218ENST00000556256 DUSP23Q9BVJ7 150 aa7.44□□□□□ -1.22
SCFD1-218ENST00000556256 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP7.44□□□□□ -1.22
SCFD1-218ENST00000556256 TMEM265A0A087WTH1 108 aa7.43□□□□□ -1.22
SCFD1-218ENST00000556256 LRRC10BA6NIK2 292 aa7.43□□□□□ -1.22
SCFD1-218ENST00000556256 ZNF862O60290 1169 aa7.43□□□□□ -1.22
SCFD1-218ENST00000556256 PTPN12Q05209 780 aaKnown RBP7.43□□□□□ -1.22
SCFD1-218ENST00000556256 SLC23A3Q6PIS1 610 aa7.43□□□□□ -1.22
SCFD1-218ENST00000556256 MTMR7Q9Y216 660 aa7.43□□□□□ -1.22
SCFD1-218ENST00000556256 PCDHGC5Q9Y5F6 944 aa7.43□□□□□ -1.22
SCFD1-218ENST00000556256 RNGTTO60942 597 aaKnown RBP7.42□□□□□ -1.22
SCFD1-218ENST00000556256 CEACAM5P06731 702 aa7.42□□□□□ -1.22
SCFD1-218ENST00000556256 ZNF157P51786 506 aaPredicted RBP7.42□□□□□ -1.22
SCFD1-218ENST00000556256 ZNF211Q13398 564 aaPredicted RBP7.42□□□□□ -1.22
SCFD1-218ENST00000556256 TTLL4Q14679 1199 aa7.42□□□□□ -1.22
SCFD1-218ENST00000556256 KIF4BQ2VIQ3 1234 aa7.42□□□□□ -1.22
SCFD1-218ENST00000556256 KRTAP19-4Q3LI73 84 aa7.42□□□□□ -1.22
SCFD1-218ENST00000556256 ARHGAP27Q6ZUM4 889 aa7.42□□□□□ -1.22
SCFD1-218ENST00000556256 CILP2Q8IUL8 1156 aa7.42□□□□□ -1.22
SCFD1-218ENST00000556256 BHLHE22Q8NFJ8 381 aaPredicted RBP7.42□□□□□ -1.22
SCFD1-218ENST00000556256 ZNF503-AS2A6NEH8 195 aa7.41□□□□□ -1.22
SCFD1-218ENST00000556256 HCLS1P14317 486 aaPredicted RBP7.41□□□□□ -1.22
SCFD1-218ENST00000556256 FAAP100Q0VG06 881 aa7.41□□□□□ -1.22
SCFD1-218ENST00000556256 RPS26P11Q5JNZ5 115 aaPredicted RBP7.41□□□□□ -1.22
SCFD1-218ENST00000556256 ANGEL2Q5VTE6 544 aaKnown RBP7.41□□□□□ -1.22
SCFD1-218ENST00000556256 FLAD1Q8NFF5 587 aa7.41□□□□□ -1.22
SCFD1-218ENST00000556256 ABCB6Q9NP58 842 aa7.41□□□□□ -1.22
SCFD1-218ENST00000556256 NPHS2Q9NP85 383 aa7.41□□□□□ -1.22
SCFD1-218ENST00000556256 PRDM7Q9NQW5 492 aa7.41□□□□□ -1.22
SCFD1-218ENST00000556256 PCOLCE2Q9UKZ9 415 aa7.41□□□□□ -1.22
SCFD1-218ENST00000556256 NEFLP07196 543 aa7.4□□□□□ -1.22
SCFD1-218ENST00000556256 ZSWIM9Q86XI8 627 aa7.4□□□□□ -1.22
SCFD1-218ENST00000556256 FAM53CQ9NYF3 392 aa7.4□□□□□ -1.22
SCFD1-218ENST00000556256 ORC1Q13415 861 aa7.39□□□□□ -1.23
SCFD1-218ENST00000556256 MLANAQ16655 118 aa7.39□□□□□ -1.23
SCFD1-218ENST00000556256 HEXIM2Q96MH2 286 aaKnown RBP7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms