RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 SNRKQ9NRH2 765 aa16.83■□□□□ 0.28
SHMT2-219ENST00000555563 FZD1Q9UP38 647 aa16.83■□□□□ 0.28
SHMT2-219ENST00000555563 RAB11FIP3O75154 756 aa16.82■□□□□ 0.28
SHMT2-219ENST00000555563 SLC10A3P09131 477 aa16.82■□□□□ 0.28
SHMT2-219ENST00000555563 MAP2K2P36507 400 aa16.82■□□□□ 0.28
SHMT2-219ENST00000555563 TNNI2P48788 182 aa16.82■□□□□ 0.28
SHMT2-219ENST00000555563 MAP2K1Q02750 393 aaPredicted RBP16.82■□□□□ 0.28
SHMT2-219ENST00000555563 MECOMQ03112 1051 aa16.82■□□□□ 0.28
SHMT2-219ENST00000555563 NOGQ13253 232 aa16.82■□□□□ 0.28
SHMT2-219ENST00000555563 CDC42EP5Q6NZY7 148 aa16.82■□□□□ 0.28
SHMT2-219ENST00000555563 ERICH6Q7L0X2 663 aa16.82■□□□□ 0.28
SHMT2-219ENST00000555563 ARMC9Q7Z3E5 817 aa16.82■□□□□ 0.28
SHMT2-219ENST00000555563 ZNF384Q8TF68 577 aa16.82■□□□□ 0.28
SHMT2-219ENST00000555563 CCDC102AQ96A19 550 aa16.82■□□□□ 0.28
SHMT2-219ENST00000555563 ZIC5Q96T25 663 aa16.82■□□□□ 0.28
SHMT2-219ENST00000555563 ANGEL1Q9UNK9 670 aaKnown RBP16.82■□□□□ 0.28
SHMT2-219ENST00000555563 RFX7Q2KHR2 1363 aa16.81■□□□□ 0.28
SHMT2-219ENST00000555563 RPAP1Q9BWH6 1393 aaPredicted RBP16.81■□□□□ 0.28
SHMT2-219ENST00000555563 MROH7-TTC4A0A0A0MT08 1334 aa16.81■□□□□ 0.28
SHMT2-219ENST00000555563 SUPT20HL1Q3ZLR7 823 aa16.81■□□□□ 0.28
SHMT2-219ENST00000555563 FKBP1CQ5VVH2 108 aa16.81■□□□□ 0.28
SHMT2-219ENST00000555563 CLASRPQ8N2M8 674 aaKnown RBP16.81■□□□□ 0.28
SHMT2-219ENST00000555563 CRBNQ96SW2 442 aa16.81■□□□□ 0.28
SHMT2-219ENST00000555563 ZAP70P43403 619 aa16.8■□□□□ 0.28
SHMT2-219ENST00000555563 MAP3K11Q16584 847 aa16.8■□□□□ 0.28
SHMT2-219ENST00000555563 FAM83AQ86UY5 434 aa16.8■□□□□ 0.28
SHMT2-219ENST00000555563 SLF2Q8IX21 1173 aa16.8■□□□□ 0.28
SHMT2-219ENST00000555563 NSUN4Q96CB9 384 aaKnown RBP16.8■□□□□ 0.28
SHMT2-219ENST00000555563 RAI14Q9P0K7 980 aa16.8■□□□□ 0.28
SHMT2-219ENST00000555563 MYO5AQ9Y4I1 1855 aaKnown RBP16.8■□□□□ 0.28
SHMT2-219ENST00000555563 PPP1R12BO60237 982 aaPredicted RBP16.79■□□□□ 0.28
SHMT2-219ENST00000555563 CYP2E1P05181 493 aaPredicted RBP16.79■□□□□ 0.28
SHMT2-219ENST00000555563 NFIAQ12857 509 aa16.79■□□□□ 0.28
SHMT2-219ENST00000555563 LDLRAD1Q5T700 205 aa16.79■□□□□ 0.28
SHMT2-219ENST00000555563 FAM163AQ96GL9 167 aaPredicted RBP16.79■□□□□ 0.28
SHMT2-219ENST00000555563 BCL11AQ9H165 835 aa16.79■□□□□ 0.28
SHMT2-219ENST00000555563 USP40Q9NVE5 1235 aa16.79■□□□□ 0.28
SHMT2-219ENST00000555563 LRP2BPQ9P2M1 347 aa16.79■□□□□ 0.28
SHMT2-219ENST00000555563 PCDHB15Q9Y5E8 787 aa16.79■□□□□ 0.28
SHMT2-219ENST00000555563 DOCK2Q92608 1830 aa16.79■□□□□ 0.28
SHMT2-219ENST00000555563 IFIT2P09913 472 aaKnown RBP16.78■□□□□ 0.28
SHMT2-219ENST00000555563 HSPA8P11142 646 aaKnown RBP16.78■□□□□ 0.28
SHMT2-219ENST00000555563 BTDP43251 543 aa16.78■□□□□ 0.28
SHMT2-219ENST00000555563 GSTO1P78417 241 aa16.78■□□□□ 0.28
SHMT2-219ENST00000555563 PIH1D3Q9NQM4 214 aaKnown RBP16.78■□□□□ 0.28
SHMT2-219ENST00000555563 NDUFB9Q9Y6M9 179 aa16.78■□□□□ 0.28
SHMT2-219ENST00000555563 IREB2P48200 963 aaKnown RBP16.77■□□□□ 0.28
SHMT2-219ENST00000555563 TCP10Q12799 353 aa16.77■□□□□ 0.28
SHMT2-219ENST00000555563 CLMNQ96JQ2 1002 aa16.77■□□□□ 0.28
SHMT2-219ENST00000555563 LRRCC1Q9C099 1032 aa16.77■□□□□ 0.28
SHMT2-219ENST00000555563 FAM198AQ9UFP1 575 aa16.77■□□□□ 0.28
SHMT2-219ENST00000555563 GPR75-ASB3A0A0A6YYF3 556 aa16.76■□□□□ 0.27
SHMT2-219ENST00000555563 USP2O75604 605 aaPredicted RBP16.76■□□□□ 0.27
SHMT2-219ENST00000555563 KIF23Q02241 960 aaPredicted RBP16.76■□□□□ 0.27
SHMT2-219ENST00000555563 FAM151AQ8WW52 585 aa16.76■□□□□ 0.27
SHMT2-219ENST00000555563 IDI2Q9BXS1 227 aa16.76■□□□□ 0.27
SHMT2-219ENST00000555563 LAMB1P07942 1786 aa16.75■□□□□ 0.27
SHMT2-219ENST00000555563 SMARCA5O60264 1052 aaPredicted RBP16.75■□□□□ 0.27
SHMT2-219ENST00000555563 WDHD1O75717 1129 aaPredicted RBP16.75■□□□□ 0.27
SHMT2-219ENST00000555563 LDHCP07864 332 aa16.75■□□□□ 0.27
SHMT2-219ENST00000555563 RGS3P49796 1198 aa16.75■□□□□ 0.27
SHMT2-219ENST00000555563 RHBDL3P58872 404 aa16.75■□□□□ 0.27
SHMT2-219ENST00000555563 MKRN3Q13064 507 aaKnown RBP16.75■□□□□ 0.27
SHMT2-219ENST00000555563 NAA16Q6N069 864 aaPredicted RBP16.75■□□□□ 0.27
SHMT2-219ENST00000555563 BEGAINQ9BUH8 593 aa16.75■□□□□ 0.27
SHMT2-219ENST00000555563 ANTXR1Q9H6X2 564 aa16.75■□□□□ 0.27
SHMT2-219ENST00000555563 DCTPP1Q9H773 170 aa16.75■□□□□ 0.27
SHMT2-219ENST00000555563 ADGRA1Q86SQ6 560 aa16.74■□□□□ 0.27
SHMT2-219ENST00000555563 ZFPM1Q8IX07 1006 aa16.74■□□□□ 0.27
SHMT2-219ENST00000555563 ANKRD13AQ8IZ07 590 aa16.74■□□□□ 0.27
SHMT2-219ENST00000555563 ABHD8Q96I13 439 aa16.74■□□□□ 0.27
SHMT2-219ENST00000555563 DDX4Q9NQI0 724 aaKnown RBP16.74■□□□□ 0.27
SHMT2-219ENST00000555563 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.74■□□□□ 0.27
SHMT2-219ENST00000555563 UNCXA6NJT0 531 aa16.73■□□□□ 0.27
SHMT2-219ENST00000555563 ENTPD3O75355 529 aa16.73■□□□□ 0.27
SHMT2-219ENST00000555563 IDH1O75874 414 aaKnown RBP16.73■□□□□ 0.27
SHMT2-219ENST00000555563 PICALMQ13492 652 aa16.73■□□□□ 0.27
SHMT2-219ENST00000555563 SPRYD7Q5W111 196 aa16.73■□□□□ 0.27
SHMT2-219ENST00000555563 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.73■□□□□ 0.278e-7■■□□□ 11.7
SHMT2-219ENST00000555563 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.73■□□□□ 0.27
SHMT2-219ENST00000555563 HOOK2Q96ED9 719 aa16.73■□□□□ 0.27
SHMT2-219ENST00000555563 TSKSQ9UJT2 592 aa16.73■□□□□ 0.27
SHMT2-219ENST00000555563 ATRNL1Q5VV63 1379 aa16.73■□□□□ 0.27
SHMT2-219ENST00000555563 CDK5RAP2Q96SN8 1893 aa16.72■□□□□ 0.27
SHMT2-219ENST00000555563 IGSF3O75054 1194 aa16.72■□□□□ 0.27
SHMT2-219ENST00000555563 VGLL4Q14135 290 aa16.72■□□□□ 0.27
SHMT2-219ENST00000555563 DCAF15Q66K64 600 aa16.72■□□□□ 0.27
SHMT2-219ENST00000555563 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.72■□□□□ 0.27
SHMT2-219ENST00000555563 SLC10A4Q96EP9 437 aa16.72■□□□□ 0.27
SHMT2-219ENST00000555563 WNK4Q96J92 1243 aa16.72■□□□□ 0.27
SHMT2-219ENST00000555563 WRNIP1Q96S55 665 aa16.72■□□□□ 0.27
SHMT2-219ENST00000555563 CSRNP1Q96S65 589 aa16.72■□□□□ 0.27
SHMT2-219ENST00000555563 DNAJC2Q99543 621 aaKnown RBP16.72■□□□□ 0.27
SHMT2-219ENST00000555563 AATFQ9NY61 560 aaKnown RBP eCLIP16.72■□□□□ 0.27
SHMT2-219ENST00000555563 AK9Q5TCS8 1911 aa16.72■□□□□ 0.27
SHMT2-219ENST00000555563 FOCADQ5VW36 1801 aa16.71■□□□□ 0.27
SHMT2-219ENST00000555563 CA12O43570 354 aa16.71■□□□□ 0.27
SHMT2-219ENST00000555563 MIGA2Q7L4E1 593 aa16.71■□□□□ 0.27
SHMT2-219ENST00000555563 SH3BP5LQ7L8J4 393 aa16.71■□□□□ 0.27
SHMT2-219ENST00000555563 SH3RF3Q8TEJ3 882 aaPredicted RBP16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms