RNA–Protein interactions for RNA: ENST00000555497.5

TMEM260-207, Transcript of transmembrane protein 260, humanhuman

TSL 2

Gene TMEM260, Length 2,218 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-207ENST00000555497 CDC27P30260 824 aa28.39■■■□□ 2.14
TMEM260-207ENST00000555497 CKAP2LQ8IYA6 745 aa28.39■■■□□ 2.14
TMEM260-207ENST00000555497 FBXO18Q8NFZ0 1043 aa28.39■■■□□ 2.14
TMEM260-207ENST00000555497 NYXQ9GZU5 481 aa28.39■■■□□ 2.14
TMEM260-207ENST00000555497 CLSTN2Q9H4D0 955 aa28.39■■■□□ 2.14
TMEM260-207ENST00000555497 DDX19AQ9NUU7 478 aaKnown RBP28.39■■■□□ 2.14
TMEM260-207ENST00000555497 USP25Q9UHP3 1055 aa28.39■■■□□ 2.14
TMEM260-207ENST00000555497 SPATA31A6Q5VVP1 1343 aa28.39■■■□□ 2.14
TMEM260-207ENST00000555497 TAF1LQ8IZX4 1826 aa28.39■■■□□ 2.14
TMEM260-207ENST00000555497 GNAT2P19087 354 aa28.39■■■□□ 2.14
TMEM260-207ENST00000555497 AKNAD1Q5T1N1 836 aa28.39■■■□□ 2.14
TMEM260-207ENST00000555497 TNMDQ9H2S6 317 aa28.39■■■□□ 2.14
TMEM260-207ENST00000555497 EIF2AK3Q9NZJ5 1116 aaKnown RBP28.39■■■□□ 2.14
TMEM260-207ENST00000555497 RTCBQ9Y3I0 505 aaKnown RBP28.39■■■□□ 2.14
TMEM260-207ENST00000555497 TDO2P48775 406 aa28.38■■■□□ 2.13
TMEM260-207ENST00000555497 METAP2P50579 478 aaKnown RBP eCLIP28.38■■■□□ 2.13
TMEM260-207ENST00000555497 RPS8P62241 208 aaKnown RBP28.38■■■□□ 2.13
TMEM260-207ENST00000555497 ZNF396Q96N95 335 aaPredicted RBP28.38■■■□□ 2.13
TMEM260-207ENST00000555497 GNL3LQ9NVN8 582 aaKnown RBP28.38■■■□□ 2.13
TMEM260-207ENST00000555497 CCDC192P0DO97 292 aa28.38■■■□□ 2.13
TMEM260-207ENST00000555497 NLRP3Q96P20 1036 aa28.38■■■□□ 2.13
TMEM260-207ENST00000555497 RAI14Q9P0K7 980 aa28.38■■■□□ 2.13
TMEM260-207ENST00000555497 CACNA1SQ13698 1873 aa28.38■■■□□ 2.13
TMEM260-207ENST00000555497 TMEM67Q5HYA8 995 aa28.37■■■□□ 2.13
TMEM260-207ENST00000555497 ATL3Q6DD88 541 aa28.37■■■□□ 2.13
TMEM260-207ENST00000555497 RBM43Q6ZSC3 357 aaKnown RBP28.37■■■□□ 2.13
TMEM260-207ENST00000555497 AIFM3Q96NN9 605 aa28.37■■■□□ 2.13
TMEM260-207ENST00000555497 CCDC144CPQ8IYA2 1237 aa28.37■■■□□ 2.13
TMEM260-207ENST00000555497 MYL10Q9BUA6 226 aa28.37■■■□□ 2.13
TMEM260-207ENST00000555497 FAM217BQ9NTX9 383 aaPredicted RBP28.37■■■□□ 2.13
TMEM260-207ENST00000555497 LY75O60449 1722 aa28.36■■■□□ 2.13
TMEM260-207ENST00000555497 TYRO3Q06418 890 aa28.36■■■□□ 2.13
TMEM260-207ENST00000555497 CAVIN4Q5BKX8 364 aa28.36■■■□□ 2.13
TMEM260-207ENST00000555497 SGMS1Q86VZ5 419 aa28.36■■■□□ 2.13
TMEM260-207ENST00000555497 MICU3Q86XE3 530 aa28.36■■■□□ 2.13
TMEM260-207ENST00000555497 STK11IPQ8N1F8 1099 aa28.36■■■□□ 2.13
TMEM260-207ENST00000555497 ZNF384Q8TF68 577 aa28.36■■■□□ 2.13
TMEM260-207ENST00000555497 NACAP1Q9BZK3 213 aa28.36■■■□□ 2.13
TMEM260-207ENST00000555497 MRVI1Q9Y6F6 885 aa28.36■■■□□ 2.13
TMEM260-207ENST00000555497 MFSD6Q6ZSS7 791 aa28.35■■■□□ 2.13
TMEM260-207ENST00000555497 FBXO33Q7Z6M2 555 aa28.35■■■□□ 2.13
TMEM260-207ENST00000555497 SDR42E1Q8WUS8 393 aa28.35■■■□□ 2.13
TMEM260-207ENST00000555497 STAG1Q8WVM7 1258 aa28.35■■■□□ 2.13
TMEM260-207ENST00000555497 GJD4Q96KN9 370 aaPredicted RBP28.35■■■□□ 2.13
TMEM260-207ENST00000555497 GOLPH3LQ9H4A5 285 aa28.35■■■□□ 2.13
TMEM260-207ENST00000555497 SBF2Q86WG5 1849 aa28.35■■■□□ 2.13
TMEM260-207ENST00000555497 NOL7Q9UMY1 257 aaKnown RBP28.35■■■□□ 2.13
TMEM260-207ENST00000555497 KIF28PB7ZC32 967 aa28.34■■■□□ 2.13
TMEM260-207ENST00000555497 SMIM22K7EJ46 135 aa28.34■■■□□ 2.13
TMEM260-207ENST00000555497 IFIT3O14879 490 aaKnown RBP28.34■■■□□ 2.13
TMEM260-207ENST00000555497 POLR3DP05423 398 aaPredicted RBP28.34■■■□□ 2.13
TMEM260-207ENST00000555497 TM4SF1P30408 202 aa28.34■■■□□ 2.13
TMEM260-207ENST00000555497 TPTE2Q6XPS3 522 aa28.34■■■□□ 2.13
TMEM260-207ENST00000555497 NFXL1Q6ZNB6 911 aa28.34■■■□□ 2.13
TMEM260-207ENST00000555497 VPS37DQ86XT2 251 aa28.34■■■□□ 2.13
TMEM260-207ENST00000555497 CNNM2Q9H8M5 875 aa28.34■■■□□ 2.13
TMEM260-207ENST00000555497 ZBTB43O43298 467 aa28.34■■■□□ 2.13
TMEM260-207ENST00000555497 LIFRP42702 1097 aa28.34■■■□□ 2.13
TMEM260-207ENST00000555497 NTRK3Q16288 839 aa28.34■■■□□ 2.13
TMEM260-207ENST00000555497 RRP12Q5JTH9 1297 aaKnown RBP28.34■■■□□ 2.13
TMEM260-207ENST00000555497 CCAR1Q8IX12 1150 aaKnown RBP28.34■■■□□ 2.13
TMEM260-207ENST00000555497 PHKBQ93100 1093 aa28.34■■■□□ 2.13
TMEM260-207ENST00000555497 MAGEB6P1A0A0J9YX57 407 aa28.33■■■□□ 2.13
TMEM260-207ENST00000555497 AP5Z1O43299 807 aa28.33■■■□□ 2.13
TMEM260-207ENST00000555497 RIOK1Q9BRS2 568 aaKnown RBP28.33■■■□□ 2.13
TMEM260-207ENST00000555497 KRT23Q9C075 422 aa28.33■■■□□ 2.13
TMEM260-207ENST00000555497 ZKSCAN3Q9BRR0 538 aa28.33■■■□□ 2.12
TMEM260-207ENST00000555497 RTEL1Q9NZ71 1219 aa28.33■■■□□ 2.12
TMEM260-207ENST00000555497 ADCY5O95622 1261 aa28.32■■■□□ 2.12
TMEM260-207ENST00000555497 DYNLL1P63167 89 aaKnown RBP28.32■■■□□ 2.12
TMEM260-207ENST00000555497 CLIC4Q9Y696 253 aa28.32■■■□□ 2.12
TMEM260-207ENST00000555497 ECM29Q5VYK3 1845 aa28.32■■■□□ 2.12
TMEM260-207ENST00000555497 RANBP6O60518 1105 aaKnown RBP28.31■■■□□ 2.12
TMEM260-207ENST00000555497 KIF23Q02241 960 aaPredicted RBP28.31■■■□□ 2.12
TMEM260-207ENST00000555497 TFCP2L1Q9NZI6 479 aa28.31■■■□□ 2.12
TMEM260-207ENST00000555497 CCDC39Q9UFE4 941 aa28.31■■■□□ 2.12
TMEM260-207ENST00000555497 GOLGA8AA7E2F4 631 aa28.31■■■□□ 2.12
TMEM260-207ENST00000555497 PPARAQ07869 468 aa28.31■■■□□ 2.12
TMEM260-207ENST00000555497 SLC51AQ86UW1 340 aa28.31■■■□□ 2.12
TMEM260-207ENST00000555497 ALG1Q9BT22 464 aa28.31■■■□□ 2.12
TMEM260-207ENST00000555497 TOMM22Q9NS69 142 aa28.31■■■□□ 2.12
TMEM260-207ENST00000555497 SNW1Q13573 536 aaKnown RBP28.3■■■□□ 2.12
TMEM260-207ENST00000555497 TNRC6CQ9HCJ0 1690 aaKnown RBP28.3■■■□□ 2.12
TMEM260-207ENST00000555497 UBE2Q2LH0YL09 131 aa28.3■■■□□ 2.12
TMEM260-207ENST00000555497 PCDHA7Q9UN72 937 aa28.3■■■□□ 2.12
TMEM260-207ENST00000555497 ME1P48163 572 aa28.29■■■□□ 2.12
TMEM260-207ENST00000555497 MYSM1Q5VVJ2 828 aa28.29■■■□□ 2.12
TMEM260-207ENST00000555497 LINC00301Q8NCQ3 95 aa28.29■■■□□ 2.12
TMEM260-207ENST00000555497 ENGASEQ8NFI3 743 aa28.29■■■□□ 2.12
TMEM260-207ENST00000555497 SLC12A7Q9Y666 1083 aa28.29■■■□□ 2.12
TMEM260-207ENST00000555497 MSNP26038 577 aaKnown RBP28.28■■■□□ 2.12
TMEM260-207ENST00000555497 FAM196AQ6ZSG2 479 aa28.28■■■□□ 2.12
TMEM260-207ENST00000555497 BAZ2AQ9UIF9 1905 aaKnown RBP28.28■■■□□ 2.12
TMEM260-207ENST00000555497 CCDC69A6NI79 296 aa28.28■■■□□ 2.12
TMEM260-207ENST00000555497 MINDY4BA8MYZ0 360 aa28.28■■■□□ 2.12
TMEM260-207ENST00000555497 CDKL5O76039 1030 aa28.28■■■□□ 2.12
TMEM260-207ENST00000555497 ANO6Q4KMQ2 910 aa28.28■■■□□ 2.12
TMEM260-207ENST00000555497 MEX3CQ5U5Q3 659 aaKnown RBP28.28■■■□□ 2.12
TMEM260-207ENST00000555497 BRAPQ7Z569 592 aa28.28■■■□□ 2.12
TMEM260-207ENST00000555497 TXNRD3Q86VQ6 643 aa28.28■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms