RNA–Protein interactions for RNA: ENST00000554439.5

PRPF39-207, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 5

Gene PRPF39, Length 2,982 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-207ENST00000554439 MRPL14Q6P1L8 145 aaKnown RBP3.09□□□□□ -1.91
PRPF39-207ENST00000554439 CEP85Q6P2H3 762 aa3.09□□□□□ -1.91
PRPF39-207ENST00000554439 ARHGAP45Q92619 1136 aa3.09□□□□□ -1.91
PRPF39-207ENST00000554439 PRAM1Q96QH2 718 aa3.09□□□□□ -1.91
PRPF39-207ENST00000554439 MEIS3Q99687 375 aa3.09□□□□□ -1.91
PRPF39-207ENST00000554439 CWC22Q9HCG8 908 aaKnown RBP3.09□□□□□ -1.91
PRPF39-207ENST00000554439 CCDC39Q9UFE4 941 aa3.09□□□□□ -1.91
PRPF39-207ENST00000554439 USP25Q9UHP3 1055 aa3.09□□□□□ -1.91
PRPF39-207ENST00000554439 SERTAD1Q9UHV2 236 aa3.09□□□□□ -1.91
PRPF39-207ENST00000554439 USP3Q9Y6I4 520 aa3.09□□□□□ -1.91
PRPF39-207ENST00000554439 PNPLA6Q8IY17 1366 aa3.09□□□□□ -1.92
PRPF39-207ENST00000554439 FAM135BQ49AJ0 1406 aa3.09□□□□□ -1.92
PRPF39-207ENST00000554439 LILRA1O75019 489 aa3.09□□□□□ -1.92
PRPF39-207ENST00000554439 ZNF853P0CG23 659 aa3.09□□□□□ -1.92
PRPF39-207ENST00000554439 CDK11BP21127 795 aaKnown RBP3.09□□□□□ -1.92
PRPF39-207ENST00000554439 PLCB3Q01970 1234 aa3.09□□□□□ -1.92
PRPF39-207ENST00000554439 LAMC2Q13753 1193 aa3.09□□□□□ -1.92
PRPF39-207ENST00000554439 RRS1Q15050 365 aaKnown RBP3.09□□□□□ -1.92
PRPF39-207ENST00000554439 DPH6Q7L8W6 267 aa3.09□□□□□ -1.92
PRPF39-207ENST00000554439 GJD3Q8N144 294 aa3.09□□□□□ -1.92
PRPF39-207ENST00000554439 ZNF784Q8NCA9 323 aaPredicted RBP3.09□□□□□ -1.92
PRPF39-207ENST00000554439 MAP7D2Q96T17 732 aa3.09□□□□□ -1.92
PRPF39-207ENST00000554439 UPF3BQ9BZI7 483 aaKnown RBP3.09□□□□□ -1.92
PRPF39-207ENST00000554439 TGIF2Q9GZN2 237 aa3.09□□□□□ -1.92
PRPF39-207ENST00000554439 TSPY26PQ9H489 355 aa3.09□□□□□ -1.92
PRPF39-207ENST00000554439 METTL5Q9NRN9 209 aaKnown RBP3.09□□□□□ -1.92
PRPF39-207ENST00000554439 LRRC4BQ9NT99 713 aa3.09□□□□□ -1.92
PRPF39-207ENST00000554439 IQSEC3Q9UPP2 1182 aaPredicted RBP3.09□□□□□ -1.92
PRPF39-207ENST00000554439 MSH6P52701 1360 aa3.08□□□□□ -1.92
PRPF39-207ENST00000554439 ATP10DQ9P241 1426 aa3.08□□□□□ -1.92
PRPF39-207ENST00000554439 DLG5Q8TDM6 1919 aa3.08□□□□□ -1.92
PRPF39-207ENST00000554439 KIDINS220Q9ULH0 1771 aa3.08□□□□□ -1.92
PRPF39-207ENST00000554439 BACH1O14867 736 aa3.08□□□□□ -1.92
PRPF39-207ENST00000554439 ERC2O15083 957 aa3.08□□□□□ -1.92
PRPF39-207ENST00000554439 SORBS3O60504 671 aa3.08□□□□□ -1.92
PRPF39-207ENST00000554439 CTSHP09668 335 aa3.08□□□□□ -1.92
PRPF39-207ENST00000554439 ZSCAN20P17040 1043 aaPredicted RBP3.08□□□□□ -1.92
PRPF39-207ENST00000554439 GNAI1P63096 354 aa3.08□□□□□ -1.92
PRPF39-207ENST00000554439 KIAA2012Q0VF49 1180 aa3.08□□□□□ -1.92
PRPF39-207ENST00000554439 ENOX2Q16206 610 aaKnown RBP3.08□□□□□ -1.92
PRPF39-207ENST00000554439 ATP2B3Q16720 1220 aa3.08□□□□□ -1.92
PRPF39-207ENST00000554439 USP48Q86UV5 1035 aa3.08□□□□□ -1.92
PRPF39-207ENST00000554439 SMAP1Q8IYB5 467 aaPredicted RBP3.08□□□□□ -1.92
PRPF39-207ENST00000554439 ZNF295-AS1Q8N0V1 137 aa3.08□□□□□ -1.92
PRPF39-207ENST00000554439 ANKRD44Q8N8A2 993 aa3.08□□□□□ -1.92
PRPF39-207ENST00000554439 CDK19Q9BWU1 502 aa3.08□□□□□ -1.92
PRPF39-207ENST00000554439 COL25A1Q9BXS0 654 aaPredicted RBP3.08□□□□□ -1.92
PRPF39-207ENST00000554439 IL25Q9H293 177 aa3.08□□□□□ -1.92
PRPF39-207ENST00000554439 IFT57Q9NWB7 429 aa3.08□□□□□ -1.92
PRPF39-207ENST00000554439 TERF2IPQ9NYB0 399 aa3.08□□□□□ -1.92
PRPF39-207ENST00000554439 MIS18AQ9NYP9 233 aa3.08□□□□□ -1.92
PRPF39-207ENST00000554439 WASF2Q9Y6W5 498 aa3.08□□□□□ -1.92
PRPF39-207ENST00000554439 MAP2P11137 1827 aaKnown RBP3.08□□□□□ -1.92
PRPF39-207ENST00000554439 SIGLEC1Q9BZZ2 1709 aa3.08□□□□□ -1.92
PRPF39-207ENST00000554439 ARHGEF40Q8TER5 1519 aa3.08□□□□□ -1.92
PRPF39-207ENST00000554439 F6X3S4 739 aa3.08□□□□□ -1.92
PRPF39-207ENST00000554439 PAX4O43316 350 aa3.08□□□□□ -1.92
PRPF39-207ENST00000554439 MCM5P33992 734 aa3.08□□□□□ -1.92
PRPF39-207ENST00000554439 TNNI2P48788 182 aa3.08□□□□□ -1.92
PRPF39-207ENST00000554439 IDI1Q13907 227 aa3.08□□□□□ -1.92
PRPF39-207ENST00000554439 RC3H1Q5TC82 1133 aaKnown RBP3.08□□□□□ -1.92
PRPF39-207ENST00000554439 KRTAP5-3Q6L8H2 238 aa3.08□□□□□ -1.92
PRPF39-207ENST00000554439 MCM10Q7L590 875 aa3.08□□□□□ -1.92
PRPF39-207ENST00000554439 VASH1Q7L8A9 365 aaPredicted RBP3.08□□□□□ -1.92
PRPF39-207ENST00000554439 SLC9A9Q8IVB4 645 aa3.08□□□□□ -1.92
PRPF39-207ENST00000554439 ETFBKMTQ8IXQ9 262 aa3.08□□□□□ -1.92
PRPF39-207ENST00000554439 SLC43A3Q8NBI5 491 aa3.08□□□□□ -1.92
PRPF39-207ENST00000554439 MYRIPQ8NFW9 859 aa3.08□□□□□ -1.92
PRPF39-207ENST00000554439 MYO19Q96H55 970 aa3.08□□□□□ -1.92
PRPF39-207ENST00000554439 CDK15Q96Q40 435 aa3.08□□□□□ -1.92
PRPF39-207ENST00000554439 CCDC94Q9BW85 323 aaPredicted RBP3.08□□□□□ -1.92
PRPF39-207ENST00000554439 KRTAP4-5Q9BYR2 181 aa3.08□□□□□ -1.92
PRPF39-207ENST00000554439 ACBD3Q9H3P7 528 aa3.08□□□□□ -1.92
PRPF39-207ENST00000554439 ZFP64Q9NPA5 681 aa3.08□□□□□ -1.92
PRPF39-207ENST00000554439 CYLDQ9NQC7 956 aa3.08□□□□□ -1.92
PRPF39-207ENST00000554439 EXOC6BQ9Y2D4 811 aa3.08□□□□□ -1.92
PRPF39-207ENST00000554439 HRH3Q9Y5N1 445 aa3.08□□□□□ -1.92
PRPF39-207ENST00000554439 RTL1A6NKG5 1358 aa3.08□□□□□ -1.92
PRPF39-207ENST00000554439 RGS12O14924 1447 aa3.08□□□□□ -1.92
PRPF39-207ENST00000554439 ABCC3O15438 1527 aa3.07□□□□□ -1.92
PRPF39-207ENST00000554439 A6NJY4 79 aa3.07□□□□□ -1.92
PRPF39-207ENST00000554439 AP5Z1O43299 807 aa3.07□□□□□ -1.92
PRPF39-207ENST00000554439 REC8O95072 547 aa3.07□□□□□ -1.92
PRPF39-207ENST00000554439 ADCY5O95622 1261 aa3.07□□□□□ -1.92
PRPF39-207ENST00000554439 HCLS1P14317 486 aaPredicted RBP3.07□□□□□ -1.92
PRPF39-207ENST00000554439 VARSP26640 1264 aaKnown RBP3.07□□□□□ -1.92
PRPF39-207ENST00000554439 IL13P35225 146 aa3.07□□□□□ -1.92
PRPF39-207ENST00000554439 ADD1P35611 737 aaKnown RBP3.07□□□□□ -1.92
PRPF39-207ENST00000554439 SMTNP53814 917 aa3.07□□□□□ -1.92
PRPF39-207ENST00000554439 PDE1AP54750 535 aa3.07□□□□□ -1.92
PRPF39-207ENST00000554439 NOLC1Q14978 699 aaKnown RBP eCLIP3.07□□□□□ -1.925e-32■■■■■ 47.5
PRPF39-207ENST00000554439 ARTNQ5T4W7 220 aa3.07□□□□□ -1.92
PRPF39-207ENST00000554439 SH3PXD2AQ5TCZ1 1133 aa3.07□□□□□ -1.92
PRPF39-207ENST00000554439 CASC1Q6TDU7 716 aa3.07□□□□□ -1.92
PRPF39-207ENST00000554439 SLC4A10Q6U841 1118 aa3.07□□□□□ -1.92
PRPF39-207ENST00000554439 HDGFL2Q7Z4V5 671 aaPredicted RBP3.07□□□□□ -1.92
PRPF39-207ENST00000554439 WAPLQ7Z5K2 1190 aa3.07□□□□□ -1.92
PRPF39-207ENST00000554439 NME9Q86XW9 330 aa3.07□□□□□ -1.92
PRPF39-207ENST00000554439 UNC5CLQ8IV45 518 aa3.07□□□□□ -1.92
PRPF39-207ENST00000554439 RILPL2Q969X0 211 aa3.07□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms