RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 PCDHB15Q9Y5E8 787 aa17.53■□□□□ 0.4
CCDC88C-207ENST00000554051 RFX7Q2KHR2 1363 aa17.53■□□□□ 0.4
CCDC88C-207ENST00000554051 WDR33Q9C0J8 1336 aaKnown RBP17.52■□□□□ 0.4
CCDC88C-207ENST00000554051 PLCG2P16885 1265 aa17.52■□□□□ 0.4
CCDC88C-207ENST00000554051 NOGQ13253 232 aa17.52■□□□□ 0.4
CCDC88C-207ENST00000554051 NSUN4Q96CB9 384 aaKnown RBP17.52■□□□□ 0.4
CCDC88C-207ENST00000554051 COL2A1P02458 1487 aaPredicted RBP17.51■□□□□ 0.39
CCDC88C-207ENST00000554051 GPR75-ASB3A0A0A6YYF3 556 aa17.51■□□□□ 0.39
CCDC88C-207ENST00000554051 SSC5DA1L4H1 1573 aa17.51■□□□□ 0.39
CCDC88C-207ENST00000554051 TCP10L2B9ZVM9 353 aa17.51■□□□□ 0.39
CCDC88C-207ENST00000554051 BAG3O95817 575 aa17.51■□□□□ 0.39
CCDC88C-207ENST00000554051 MAP2K2P36507 400 aa17.51■□□□□ 0.39
CCDC88C-207ENST00000554051 ZAP70P43403 619 aa17.51■□□□□ 0.39
CCDC88C-207ENST00000554051 IREB2P48200 963 aaKnown RBP17.51■□□□□ 0.39
CCDC88C-207ENST00000554051 VEGFBP49765 207 aa17.51■□□□□ 0.39
CCDC88C-207ENST00000554051 MAP3K12Q12852 859 aa17.51■□□□□ 0.39
CCDC88C-207ENST00000554051 MAP3K11Q16584 847 aa17.51■□□□□ 0.39
CCDC88C-207ENST00000554051 NAA16Q6N069 864 aaPredicted RBP17.51■□□□□ 0.39
CCDC88C-207ENST00000554051 REM2Q8IYK8 340 aaPredicted RBP17.51■□□□□ 0.39
CCDC88C-207ENST00000554051 IDI2Q9BXS1 227 aa17.51■□□□□ 0.39
CCDC88C-207ENST00000554051 SUPT16HQ9Y5B9 1047 aaKnown RBP17.51■□□□□ 0.39
CCDC88C-207ENST00000554051 ENTPD3O75355 529 aa17.5■□□□□ 0.39
CCDC88C-207ENST00000554051 NPM3O75607 178 aaKnown RBP17.5■□□□□ 0.39
CCDC88C-207ENST00000554051 CYP2E1P05181 493 aaPredicted RBP17.5■□□□□ 0.39
CCDC88C-207ENST00000554051 ATP5JP18859 108 aa17.5■□□□□ 0.39
CCDC88C-207ENST00000554051 BTDP43251 543 aa17.5■□□□□ 0.39
CCDC88C-207ENST00000554051 MAP2K1Q02750 393 aaPredicted RBP17.5■□□□□ 0.39
CCDC88C-207ENST00000554051 DCAF15Q66K64 600 aa17.5■□□□□ 0.39
CCDC88C-207ENST00000554051 CDC42EP5Q6NZY7 148 aa17.5■□□□□ 0.39
CCDC88C-207ENST00000554051 FAM151AQ8WW52 585 aa17.5■□□□□ 0.39
CCDC88C-207ENST00000554051 SNRKQ9NRH2 765 aa17.5■□□□□ 0.39
CCDC88C-207ENST00000554051 USP40Q9NVE5 1235 aa17.5■□□□□ 0.39
CCDC88C-207ENST00000554051 AOX1Q06278 1338 aa17.49■□□□□ 0.39
CCDC88C-207ENST00000554051 TBC1D9Q6ZT07 1266 aa17.49■□□□□ 0.39
CCDC88C-207ENST00000554051 RWDD1Q9H446 243 aaPredicted RBP17.49■□□□□ 0.39
CCDC88C-207ENST00000554051 ECHDC1Q9NTX5 307 aa17.49■□□□□ 0.39
CCDC88C-207ENST00000554051 SCAF8Q9UPN6 1271 aaKnown RBP17.49■□□□□ 0.39
CCDC88C-207ENST00000554051 IDH1O75874 414 aaKnown RBP17.48■□□□□ 0.39
CCDC88C-207ENST00000554051 SLC10A3P09131 477 aa17.48■□□□□ 0.39
CCDC88C-207ENST00000554051 ZNF157P51786 506 aaPredicted RBP17.48■□□□□ 0.39
CCDC88C-207ENST00000554051 CYP4F22Q6NT55 531 aa17.48■□□□□ 0.39
CCDC88C-207ENST00000554051 DLK2Q6UY11 383 aa17.48■□□□□ 0.39
CCDC88C-207ENST00000554051 TEPSINQ96N21 525 aa17.48■□□□□ 0.39
CCDC88C-207ENST00000554051 ANGEL1Q9UNK9 670 aaKnown RBP17.48■□□□□ 0.39
CCDC88C-207ENST00000554051 TTC41PQ6P2S7 1318 aa17.47■□□□□ 0.39
CCDC88C-207ENST00000554051 PRAMEF18Q5VWM3 479 aa17.47■□□□□ 0.39
CCDC88C-207ENST00000554051 AIDAQ96BJ3 306 aa17.47■□□□□ 0.39
CCDC88C-207ENST00000554051 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.47■□□□□ 0.39
CCDC88C-207ENST00000554051 TMEM39BQ9GZU3 492 aa17.47■□□□□ 0.39
CCDC88C-207ENST00000554051 PIH1D3Q9NQM4 214 aaKnown RBP17.47■□□□□ 0.39
CCDC88C-207ENST00000554051 OTOFQ9HC10 1997 aa17.46■□□□□ 0.39
CCDC88C-207ENST00000554051 LAMB1P07942 1786 aa17.46■□□□□ 0.39
CCDC88C-207ENST00000554051 ERC2O15083 957 aa17.46■□□□□ 0.39
CCDC88C-207ENST00000554051 CA12O43570 354 aa17.46■□□□□ 0.39
CCDC88C-207ENST00000554051 CACNB3P54284 484 aa17.46■□□□□ 0.39
CCDC88C-207ENST00000554051 LDLRAD1Q5T700 205 aa17.46■□□□□ 0.39
CCDC88C-207ENST00000554051 NBPF12Q5TAG4 269 aaPredicted RBP17.46■□□□□ 0.39
CCDC88C-207ENST00000554051 RASAL3Q86YV0 1011 aa17.46■□□□□ 0.39
CCDC88C-207ENST00000554051 ANKRD13AQ8IZ07 590 aa17.46■□□□□ 0.39
CCDC88C-207ENST00000554051 DNAJC2Q99543 621 aaKnown RBP17.46■□□□□ 0.39
CCDC88C-207ENST00000554051 HAUS7Q99871 368 aa17.46■□□□□ 0.39
CCDC88C-207ENST00000554051 BEGAINQ9BUH8 593 aa17.46■□□□□ 0.39
CCDC88C-207ENST00000554051 FOCADQ5VW36 1801 aa17.45■□□□□ 0.38
CCDC88C-207ENST00000554051 ATRNL1Q5VV63 1379 aa17.45■□□□□ 0.38
CCDC88C-207ENST00000554051 PPP4CP60510 307 aa17.45■□□□□ 0.38
CCDC88C-207ENST00000554051 GRM1Q13255 1194 aa17.45■□□□□ 0.38
CCDC88C-207ENST00000554051 LRRFIP1Q32MZ4 808 aaKnown RBP17.45■□□□□ 0.38
CCDC88C-207ENST00000554051 ZNF384Q8TF68 577 aa17.45■□□□□ 0.38
CCDC88C-207ENST00000554051 PAG1Q9NWQ8 432 aa17.45■□□□□ 0.38
CCDC88C-207ENST00000554051 UBE2Q2LH0YL09 131 aa17.44■□□□□ 0.38
CCDC88C-207ENST00000554051 WDHD1O75717 1129 aaPredicted RBP17.44■□□□□ 0.38
CCDC88C-207ENST00000554051 ZBTB48P10074 688 aaPredicted RBP17.44■□□□□ 0.38
CCDC88C-207ENST00000554051 CYP7A1P22680 504 aa17.44■□□□□ 0.38
CCDC88C-207ENST00000554051 RGS3P49796 1198 aa17.44■□□□□ 0.38
CCDC88C-207ENST00000554051 RHBDL3P58872 404 aa17.44■□□□□ 0.38
CCDC88C-207ENST00000554051 NFIAQ12857 509 aa17.44■□□□□ 0.38
CCDC88C-207ENST00000554051 ZSCAN25Q6NSZ9 544 aa17.44■□□□□ 0.38
CCDC88C-207ENST00000554051 TEX11Q8IYF3 940 aa17.44■□□□□ 0.38
CCDC88C-207ENST00000554051 EXOC6Q8TAG9 804 aa17.44■□□□□ 0.38
CCDC88C-207ENST00000554051 CSADQ9Y600 493 aa17.44■□□□□ 0.38
CCDC88C-207ENST00000554051 MYH7P12883 1935 aa17.43■□□□□ 0.38
CCDC88C-207ENST00000554051 FAM155AB1AL88 458 aaPredicted RBP17.43■□□□□ 0.38
CCDC88C-207ENST00000554051 GOLIM4O00461 696 aa17.43■□□□□ 0.38
CCDC88C-207ENST00000554051 SMARCA5O60264 1052 aaPredicted RBP17.43■□□□□ 0.38
CCDC88C-207ENST00000554051 MAGEB6Q8N7X4 407 aa17.43■□□□□ 0.38
CCDC88C-207ENST00000554051 ZNF341Q9BYN7 854 aa17.43■□□□□ 0.38
CCDC88C-207ENST00000554051 BCL11AQ9H165 835 aa17.43■□□□□ 0.38
CCDC88C-207ENST00000554051 FAM198AQ9UFP1 575 aa17.43■□□□□ 0.38
CCDC88C-207ENST00000554051 MYO5AQ9Y4I1 1855 aaKnown RBP17.43■□□□□ 0.38
CCDC88C-207ENST00000554051 GLRX3O76003 335 aaKnown RBP17.42■□□□□ 0.38
CCDC88C-207ENST00000554051 HSPA1AP0DMV8 641 aaKnown RBP17.42■□□□□ 0.38
CCDC88C-207ENST00000554051 HSPA1BP0DMV9 641 aaKnown RBP17.42■□□□□ 0.38
CCDC88C-207ENST00000554051 MX1P20591 662 aa17.42■□□□□ 0.38
CCDC88C-207ENST00000554051 SREBF2Q12772 1141 aa17.42■□□□□ 0.38
CCDC88C-207ENST00000554051 TCP10Q12799 353 aa17.42■□□□□ 0.38
CCDC88C-207ENST00000554051 PICALMQ13492 652 aa17.42■□□□□ 0.38
CCDC88C-207ENST00000554051 PRKG1Q13976 671 aa17.42■□□□□ 0.38
CCDC88C-207ENST00000554051 ZSCAN29Q8IWY8 852 aaPredicted RBP17.42■□□□□ 0.38
CCDC88C-207ENST00000554051 SMC5Q8IY18 1101 aa17.42■□□□□ 0.38
CCDC88C-207ENST00000554051 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms