RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 FAM83AQ86UY5 434 aa12.66□□□□□ -0.38
CCDC88C-206ENST00000553437 RPAP2Q8IXW5 612 aaPredicted RBP12.66□□□□□ -0.38
CCDC88C-206ENST00000553437 ZGPATQ8N5A5 531 aaKnown RBP12.66□□□□□ -0.38
CCDC88C-206ENST00000553437 DBNDD2Q9BQY9 259 aa12.66□□□□□ -0.38
CCDC88C-206ENST00000553437 BEGAINQ9BUH8 593 aa12.66□□□□□ -0.38
CCDC88C-206ENST00000553437 ARAP2Q8WZ64 1704 aa12.65□□□□□ -0.38
CCDC88C-206ENST00000553437 GAKO14976 1311 aa12.65□□□□□ -0.38
CCDC88C-206ENST00000553437 CA12O43570 354 aa12.65□□□□□ -0.38
CCDC88C-206ENST00000553437 MCAMP43121 646 aa12.65□□□□□ -0.38
CCDC88C-206ENST00000553437 TNNI2P48788 182 aa12.65□□□□□ -0.38
CCDC88C-206ENST00000553437 SPATA5Q8NB90 893 aa12.65□□□□□ -0.38
CCDC88C-206ENST00000553437 ZNF384Q8TF68 577 aa12.65□□□□□ -0.38
CCDC88C-206ENST00000553437 EAF2Q96CJ1 260 aaPredicted RBP12.65□□□□□ -0.38
CCDC88C-206ENST00000553437 FAM163AQ96GL9 167 aaPredicted RBP12.65□□□□□ -0.38
CCDC88C-206ENST00000553437 ABCF2Q9UG63 623 aa12.65□□□□□ -0.38
CCDC88C-206ENST00000553437 TSKSQ9UJT2 592 aa12.65□□□□□ -0.38
CCDC88C-206ENST00000553437 DBNLQ9UJU6 430 aaKnown RBP12.65□□□□□ -0.38
CCDC88C-206ENST00000553437 EXOC6BQ9Y2D4 811 aa12.65□□□□□ -0.38
CCDC88C-206ENST00000553437 UNCXA6NJT0 531 aa12.64□□□□□ -0.39
CCDC88C-206ENST00000553437 UQCRFS1P1P0C7P4 283 aa12.64□□□□□ -0.39
CCDC88C-206ENST00000553437 SPRYD7Q5W111 196 aa12.64□□□□□ -0.39
CCDC88C-206ENST00000553437 SPTY2D1Q68D10 685 aaPredicted RBP12.64□□□□□ -0.39
CCDC88C-206ENST00000553437 TBC1D9Q6ZT07 1266 aa12.64□□□□□ -0.39
CCDC88C-206ENST00000553437 REM2Q8IYK8 340 aaPredicted RBP12.64□□□□□ -0.39
CCDC88C-206ENST00000553437 CLMNQ96JQ2 1002 aa12.64□□□□□ -0.39
CCDC88C-206ENST00000553437 ZNF512BQ96KM6 892 aaPredicted RBP12.64□□□□□ -0.39
CCDC88C-206ENST00000553437 CCDC8Q9H0W5 538 aaPredicted RBP12.64□□□□□ -0.39
CCDC88C-206ENST00000553437 RNF186Q9NXI6 227 aa12.64□□□□□ -0.39
CCDC88C-206ENST00000553437 TLR7Q9NYK1 1049 aaKnown RBP12.64□□□□□ -0.39
CCDC88C-206ENST00000553437 TMOD2Q9NZR1 351 aa12.64□□□□□ -0.39
CCDC88C-206ENST00000553437 IREB2P48200 963 aaKnown RBP12.63□□□□□ -0.39
CCDC88C-206ENST00000553437 MECOMQ03112 1051 aa12.63□□□□□ -0.39
CCDC88C-206ENST00000553437 NFIAQ12857 509 aa12.63□□□□□ -0.39
CCDC88C-206ENST00000553437 MKRN3Q13064 507 aaKnown RBP12.63□□□□□ -0.39
CCDC88C-206ENST00000553437 ERICH6Q7L0X2 663 aa12.63□□□□□ -0.39
CCDC88C-206ENST00000553437 DZIP1Q86YF9 867 aaKnown RBP12.63□□□□□ -0.39
CCDC88C-206ENST00000553437 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.63□□□□□ -0.39
CCDC88C-206ENST00000553437 SLC10A4Q96EP9 437 aa12.63□□□□□ -0.39
CCDC88C-206ENST00000553437 CHMP4BQ9H444 224 aaKnown RBP12.63□□□□□ -0.39
CCDC88C-206ENST00000553437 USP40Q9NVE5 1235 aa12.63□□□□□ -0.39
CCDC88C-206ENST00000553437 FAM198AQ9UFP1 575 aa12.63□□□□□ -0.39
CCDC88C-206ENST00000553437 TM4SF4P48230 202 aa12.62□□□□□ -0.39
CCDC88C-206ENST00000553437 CCDC158Q5M9N0 1113 aa12.62□□□□□ -0.39
CCDC88C-206ENST00000553437 TTC39AQ5SRH9 613 aa12.62□□□□□ -0.39
CCDC88C-206ENST00000553437 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.62□□□□□ -0.39
CCDC88C-206ENST00000553437 ERC1Q8IUD2 1116 aa12.62□□□□□ -0.39
CCDC88C-206ENST00000553437 ZFPM1Q8IX07 1006 aa12.62□□□□□ -0.39
CCDC88C-206ENST00000553437 ANKRD13AQ8IZ07 590 aa12.62□□□□□ -0.39
CCDC88C-206ENST00000553437 FAM151AQ8WW52 585 aa12.62□□□□□ -0.39
CCDC88C-206ENST00000553437 NSUN4Q96CB9 384 aaKnown RBP12.62□□□□□ -0.39
CCDC88C-206ENST00000553437 SNRKQ9NRH2 765 aa12.62□□□□□ -0.39
CCDC88C-206ENST00000553437 SAGE1Q9NXZ1 904 aa12.62□□□□□ -0.39
CCDC88C-206ENST00000553437 RPAP1Q9BWH6 1393 aaPredicted RBP12.61□□□□□ -0.39
CCDC88C-206ENST00000553437 GPR75-ASB3A0A0A6YYF3 556 aa12.61□□□□□ -0.39
CCDC88C-206ENST00000553437 HMMRO75330 724 aa12.61□□□□□ -0.39
CCDC88C-206ENST00000553437 TRPA1O75762 1119 aa12.61□□□□□ -0.39
CCDC88C-206ENST00000553437 CYP2E1P05181 493 aaPredicted RBP12.61□□□□□ -0.39
CCDC88C-206ENST00000553437 GJA5P36382 358 aa12.61□□□□□ -0.39
CCDC88C-206ENST00000553437 MAP3K9P80192 1104 aa12.61□□□□□ -0.39
CCDC88C-206ENST00000553437 HSP90AB4PQ58FF6 505 aa12.61□□□□□ -0.39
CCDC88C-206ENST00000553437 SLF2Q8IX21 1173 aa12.61□□□□□ -0.39
CCDC88C-206ENST00000553437 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.61□□□□□ -0.39
CCDC88C-206ENST00000553437 RHPN1Q8TCX5 695 aa12.61□□□□□ -0.39
CCDC88C-206ENST00000553437 WNK4Q96J92 1243 aa12.61□□□□□ -0.39
CCDC88C-206ENST00000553437 IDI2Q9BXS1 227 aa12.61□□□□□ -0.39
CCDC88C-206ENST00000553437 MROH7-TTC4A0A0A0MT08 1334 aa12.61□□□□□ -0.39
CCDC88C-206ENST00000553437 RFX7Q2KHR2 1363 aa12.6□□□□□ -0.39
CCDC88C-206ENST00000553437 WDHD1O75717 1129 aaPredicted RBP12.6□□□□□ -0.39
CCDC88C-206ENST00000553437 ZBTB48P10074 688 aaPredicted RBP12.6□□□□□ -0.39
CCDC88C-206ENST00000553437 BTDP43251 543 aa12.6□□□□□ -0.39
CCDC88C-206ENST00000553437 ZAP70P43403 619 aa12.6□□□□□ -0.39
CCDC88C-206ENST00000553437 RHBDL3P58872 404 aa12.6□□□□□ -0.39
CCDC88C-206ENST00000553437 TCP10Q12799 353 aa12.6□□□□□ -0.39
CCDC88C-206ENST00000553437 AACSQ86V21 672 aa12.6□□□□□ -0.39
CCDC88C-206ENST00000553437 YTHDC1Q96MU7 727 aaKnown RBP12.6□□□□□ -0.39
CCDC88C-206ENST00000553437 IL1RAPL2Q9NP60 686 aa12.6□□□□□ -0.39
CCDC88C-206ENST00000553437 RAI14Q9P0K7 980 aa12.6□□□□□ -0.39
CCDC88C-206ENST00000553437 ECM29Q5VYK3 1845 aa12.6□□□□□ -0.39
CCDC88C-206ENST00000553437 ENTPD3O75355 529 aa12.59□□□□□ -0.39
CCDC88C-206ENST00000553437 LDHCP07864 332 aa12.59□□□□□ -0.39
CCDC88C-206ENST00000553437 RGS3P49796 1198 aa12.59□□□□□ -0.39
CCDC88C-206ENST00000553437 GSTO1P78417 241 aa12.59□□□□□ -0.39
CCDC88C-206ENST00000553437 VGLL4Q14135 290 aa12.59□□□□□ -0.39
CCDC88C-206ENST00000553437 MIGA2Q7L4E1 593 aa12.59□□□□□ -0.39
CCDC88C-206ENST00000553437 SH3BP5LQ7L8J4 393 aa12.59□□□□□ -0.39
CCDC88C-206ENST00000553437 KIF1BPQ96EK5 621 aa12.59□□□□□ -0.39
CCDC88C-206ENST00000553437 ELP3Q9H9T3 547 aa12.59□□□□□ -0.39
CCDC88C-206ENST00000553437 DDX4Q9NQI0 724 aaKnown RBP12.59□□□□□ -0.39
CCDC88C-206ENST00000553437 PIH1D3Q9NQM4 214 aaKnown RBP12.59□□□□□ -0.39
CCDC88C-206ENST00000553437 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.59□□□□□ -0.39
CCDC88C-206ENST00000553437 LRP2BPQ9P2M1 347 aa12.59□□□□□ -0.39
CCDC88C-206ENST00000553437 MANSC4A6NHS7 340 aaPredicted RBP12.58□□□□□ -0.4
CCDC88C-206ENST00000553437 RAB11FIP3O75154 756 aa12.58□□□□□ -0.4
CCDC88C-206ENST00000553437 RRP1P56182 461 aaKnown RBP12.58□□□□□ -0.4
CCDC88C-206ENST00000553437 SREBF2Q12772 1141 aa12.58□□□□□ -0.4
CCDC88C-206ENST00000553437 HOOK2Q96ED9 719 aa12.58□□□□□ -0.4
CCDC88C-206ENST00000553437 ABHD8Q96I13 439 aa12.58□□□□□ -0.4
CCDC88C-206ENST00000553437 ZNF112Q9UJU3 913 aa12.58□□□□□ -0.4
CCDC88C-206ENST00000553437 SNCAIPQ9Y6H5 919 aa12.58□□□□□ -0.4
CCDC88C-206ENST00000553437 ATRNL1Q5VV63 1379 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms