RNA–Protein interactions for RNA: ENST00000553308.1

SYNE2-209, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 557 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-209ENST00000553308 PSMC4P43686 418 aa11.44□□□□□ -0.58
SYNE2-209ENST00000553308 FKBP1CQ5VVH2 108 aa11.44□□□□□ -0.58
SYNE2-209ENST00000553308 DCAF15Q66K64 600 aa11.44□□□□□ -0.58
SYNE2-209ENST00000553308 C17orf99Q6UX52 265 aa11.44□□□□□ -0.58
SYNE2-209ENST00000553308 CHRDL2Q6WN34 429 aa11.44□□□□□ -0.58
SYNE2-209ENST00000553308 HOOK2Q96ED9 719 aa11.44□□□□□ -0.58
SYNE2-209ENST00000553308 TRIM47Q96LD4 638 aa11.44□□□□□ -0.58
SYNE2-209ENST00000553308 ZNF341Q9BYN7 854 aa11.44□□□□□ -0.58
SYNE2-209ENST00000553308 SRRDQ9UH36 339 aa11.44□□□□□ -0.58
SYNE2-209ENST00000553308 PDHXO00330 501 aa11.43□□□□□ -0.58
SYNE2-209ENST00000553308 OSBPP22059 807 aa11.43□□□□□ -0.58
SYNE2-209ENST00000553308 PRMT2P55345 433 aa11.43□□□□□ -0.58
SYNE2-209ENST00000553308 PPATQ06203 517 aa11.43□□□□□ -0.58
SYNE2-209ENST00000553308 ANKRD23Q86SG2 305 aa11.43□□□□□ -0.58
SYNE2-209ENST00000553308 MRIQ9BWK5 157 aa11.43□□□□□ -0.58
SYNE2-209ENST00000553308 MYH13Q9UKX3 1938 aa11.43□□□□□ -0.58
SYNE2-209ENST00000553308 GRK4P32298 578 aa11.42□□□□□ -0.58
SYNE2-209ENST00000553308 TCP10Q12799 353 aa11.42□□□□□ -0.58
SYNE2-209ENST00000553308 MOGSQ13724 837 aa11.42□□□□□ -0.58
SYNE2-209ENST00000553308 HHIPL2Q6UWX4 724 aa11.42□□□□□ -0.58
SYNE2-209ENST00000553308 RAET1EQ8TD07 263 aa11.42□□□□□ -0.58
SYNE2-209ENST00000553308 DPF3Q92784 378 aa11.42□□□□□ -0.58
SYNE2-209ENST00000553308 RBM27Q9P2N5 1060 aaKnown RBP11.42□□□□□ -0.58
SYNE2-209ENST00000553308 KCNH4Q9UQ05 1017 aa11.42□□□□□ -0.58
SYNE2-209ENST00000553308 SUGT1Q9Y2Z0 365 aa11.42□□□□□ -0.58
SYNE2-209ENST00000553308 MYPNQ86TC9 1320 aa11.41□□□□□ -0.58
SYNE2-209ENST00000553308 KIF16BQ96L93 1317 aa11.41□□□□□ -0.58
SYNE2-209ENST00000553308 FMNL1O95466 1100 aaPredicted RBP11.41□□□□□ -0.58
SYNE2-209ENST00000553308 IFIT1P09914 478 aaKnown RBP11.41□□□□□ -0.58
SYNE2-209ENST00000553308 CCL5P13501 91 aa11.41□□□□□ -0.58
SYNE2-209ENST00000553308 FGFR2P21802 821 aa11.41□□□□□ -0.58
SYNE2-209ENST00000553308 NFIAQ12857 509 aa11.41□□□□□ -0.58
SYNE2-209ENST00000553308 PUM3Q15397 648 aaKnown RBP11.41□□□□□ -0.58
SYNE2-209ENST00000553308 DIXDC1Q155Q3 683 aa11.41□□□□□ -0.58
SYNE2-209ENST00000553308 UBE2Q1Q7Z7E8 422 aa11.41□□□□□ -0.58
SYNE2-209ENST00000553308 FAM151AQ8WW52 585 aa11.41□□□□□ -0.58
SYNE2-209ENST00000553308 ZNF112Q9UJU3 913 aa11.41□□□□□ -0.58
SYNE2-209ENST00000553308 DAGLAQ9Y4D2 1042 aa11.41□□□□□ -0.58
SYNE2-209ENST00000553308 CYP2C8P10632 490 aa11.4□□□□□ -0.58
SYNE2-209ENST00000553308 HOXD10P28358 340 aa11.4□□□□□ -0.58
SYNE2-209ENST00000553308 GJA8P48165 433 aa11.4□□□□□ -0.58
SYNE2-209ENST00000553308 PRKCZQ05513 592 aa11.4□□□□□ -0.58
SYNE2-209ENST00000553308 NOL9Q5SY16 702 aaKnown RBP11.4□□□□□ -0.58
SYNE2-209ENST00000553308 CDC42EP5Q6NZY7 148 aa11.4□□□□□ -0.58
SYNE2-209ENST00000553308 NKX2-3Q8TAU0 364 aa11.4□□□□□ -0.58
SYNE2-209ENST00000553308 TRIOBPQ9H2D6 2365 aa11.4□□□□□ -0.58
SYNE2-209ENST00000553308 AK9Q5TCS8 1911 aa11.39□□□□□ -0.59
SYNE2-209ENST00000553308 MGAMO43451 1857 aa11.39□□□□□ -0.59
SYNE2-209ENST00000553308 GJB1P08034 283 aa11.39□□□□□ -0.59
SYNE2-209ENST00000553308 BCRP11274 1271 aa11.39□□□□□ -0.59
SYNE2-209ENST00000553308 SLC5A1P13866 664 aa11.39□□□□□ -0.59
SYNE2-209ENST00000553308 PRDX5P30044 214 aa11.39□□□□□ -0.59
SYNE2-209ENST00000553308 GPAT2Q6NUI2 795 aa11.39□□□□□ -0.59
SYNE2-209ENST00000553308 WDR66Q8TBY9 1149 aa11.39□□□□□ -0.59
SYNE2-209ENST00000553308 PARK7Q99497 189 aaKnown RBP11.39□□□□□ -0.59
SYNE2-209ENST00000553308 RNF208Q9H0X6 261 aa11.39□□□□□ -0.59
SYNE2-209ENST00000553308 BIN2Q9UBW5 565 aaPredicted RBP11.39□□□□□ -0.59
SYNE2-209ENST00000553308 FAM198AQ9UFP1 575 aa11.39□□□□□ -0.59
SYNE2-209ENST00000553308 GABRQQ9UN88 632 aa11.39□□□□□ -0.59
SYNE2-209ENST00000553308 DOCK2Q92608 1830 aa11.39□□□□□ -0.59
SYNE2-209ENST00000553308 EYA2O00167 538 aa11.38□□□□□ -0.59
SYNE2-209ENST00000553308 ZEB1P37275 1124 aaPredicted RBP11.38□□□□□ -0.59
SYNE2-209ENST00000553308 RFX5P48382 616 aaPredicted RBP11.38□□□□□ -0.59
SYNE2-209ENST00000553308 FCGRTP55899 365 aa11.38□□□□□ -0.59
SYNE2-209ENST00000553308 ZFPM1Q8IX07 1006 aa11.38□□□□□ -0.59
SYNE2-209ENST00000553308 MRPL50Q8N5N7 158 aaKnown RBP11.38□□□□□ -0.59
SYNE2-209ENST00000553308 LPIN2Q92539 896 aa11.38□□□□□ -0.59
SYNE2-209ENST00000553308 HTATIP2Q9BUP3 242 aa11.38□□□□□ -0.59
SYNE2-209ENST00000553308 USP44Q9H0E7 712 aa11.38□□□□□ -0.59
SYNE2-209ENST00000553308 UNC93B1Q9H1C4 597 aa11.38□□□□□ -0.59
SYNE2-209ENST00000553308 PRO3102Q9H379 93 aa11.38□□□□□ -0.59
SYNE2-209ENST00000553308 ATRNL1Q5VV63 1379 aa11.38□□□□□ -0.59
SYNE2-209ENST00000553308 FARP2O94887 1054 aaPredicted RBP11.37□□□□□ -0.59
SYNE2-209ENST00000553308 UBXN2AP68543 259 aa11.37□□□□□ -0.59
SYNE2-209ENST00000553308 ATG9AQ7Z3C6 839 aa11.37□□□□□ -0.59
SYNE2-209ENST00000553308 SLAIN1Q8ND83 568 aa11.37□□□□□ -0.59
SYNE2-209ENST00000553308 U2AF1L4Q8WU68 220 aaKnown RBP11.37□□□□□ -0.59
SYNE2-209ENST00000553308 USP40Q9NVE5 1235 aa11.37□□□□□ -0.59
SYNE2-209ENST00000553308 CEP290O15078 2479 aa11.37□□□□□ -0.59
SYNE2-209ENST00000553308 PTPRCP08575 1304 aa11.36□□□□□ -0.59
SYNE2-209ENST00000553308 A0A0G2JLL6 359 aaPredicted RBP11.36□□□□□ -0.59
SYNE2-209ENST00000553308 PHF20L1A8MW92 1017 aa11.36□□□□□ -0.59
SYNE2-209ENST00000553308 CXCL11O14625 94 aa11.36□□□□□ -0.59
SYNE2-209ENST00000553308 LDHBP07195 334 aaKnown RBP11.36□□□□□ -0.59
SYNE2-209ENST00000553308 SLURP2P0DP57 97 aa11.36□□□□□ -0.59
SYNE2-209ENST00000553308 ELNP15502 786 aa11.36□□□□□ -0.59
SYNE2-209ENST00000553308 PRRT2Q7Z6L0 340 aaPredicted RBP11.36□□□□□ -0.59
SYNE2-209ENST00000553308 SCYL3Q8IZE3 742 aa11.36□□□□□ -0.59
SYNE2-209ENST00000553308 ZHX2Q9Y6X8 837 aa11.36□□□□□ -0.59
SYNE2-209ENST00000553308 PTPRFP10586 1907 aa11.36□□□□□ -0.59
SYNE2-209ENST00000553308 RFX7Q2KHR2 1363 aa11.36□□□□□ -0.59
SYNE2-209ENST00000553308 ZBTB7BO15156 539 aaPredicted RBP11.35□□□□□ -0.59
SYNE2-209ENST00000553308 ADCY3O60266 1144 aa11.35□□□□□ -0.59
SYNE2-209ENST00000553308 PTPRAP18433 802 aa11.35□□□□□ -0.59
SYNE2-209ENST00000553308 PHKA1P46020 1223 aa11.35□□□□□ -0.59
SYNE2-209ENST00000553308 FLT3LGP49771 235 aa11.35□□□□□ -0.59
SYNE2-209ENST00000553308 RGS3P49796 1198 aa11.35□□□□□ -0.59
SYNE2-209ENST00000553308 ATP2B3Q16720 1220 aa11.35□□□□□ -0.59
SYNE2-209ENST00000553308 GADL1Q6ZQY3 521 aa11.35□□□□□ -0.59
SYNE2-209ENST00000553308 SH3BP5LQ7L8J4 393 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms