RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 C5P01031 1676 aa6.5□□□□□ -1.37
LIMA1-215ENST00000552823 UQCRFS1P1P0C7P4 283 aa6.5□□□□□ -1.37
LIMA1-215ENST00000552823 PRDX5P30044 214 aa6.5□□□□□ -1.37
LIMA1-215ENST00000552823 RFC4P35249 363 aa6.5□□□□□ -1.37
LIMA1-215ENST00000552823 GOLGA8FQ08AF8 430 aa6.5□□□□□ -1.37
LIMA1-215ENST00000552823 GOLGA8DPQ0D2H9 430 aa6.5□□□□□ -1.37
LIMA1-215ENST00000552823 DIXDC1Q155Q3 683 aa6.5□□□□□ -1.37
LIMA1-215ENST00000552823 ZNF827Q17R98 1081 aa6.5□□□□□ -1.37
LIMA1-215ENST00000552823 CAVIN4Q5BKX8 364 aa6.5□□□□□ -1.37
LIMA1-215ENST00000552823 NAA16Q6N069 864 aaPredicted RBP6.5□□□□□ -1.37
LIMA1-215ENST00000552823 NLRP3Q96P20 1036 aa6.5□□□□□ -1.37
LIMA1-215ENST00000552823 NACAP1Q9BZK3 213 aa6.5□□□□□ -1.37
LIMA1-215ENST00000552823 NBPF3Q9H094 633 aa6.5□□□□□ -1.37
LIMA1-215ENST00000552823 HPS5Q9UPZ3 1129 aa6.5□□□□□ -1.37
LIMA1-215ENST00000552823 SPATA31A1Q5TZJ5 1347 aa6.5□□□□□ -1.37
LIMA1-215ENST00000552823 CARMIL3Q8ND23 1372 aa6.5□□□□□ -1.37
LIMA1-215ENST00000552823 UQCRHLA0A096LP55 91 aa6.5□□□□□ -1.37
LIMA1-215ENST00000552823 MAGEB6P1A0A0J9YX57 407 aa6.5□□□□□ -1.37
LIMA1-215ENST00000552823 FAM205CA6NFA0 338 aa6.5□□□□□ -1.37
LIMA1-215ENST00000552823 SPTLC2O15270 562 aa6.5□□□□□ -1.37
LIMA1-215ENST00000552823 EPB41L2O43491 1005 aaKnown RBP6.5□□□□□ -1.37
LIMA1-215ENST00000552823 TOM1O60784 492 aa6.5□□□□□ -1.37
LIMA1-215ENST00000552823 UQCRHP07919 91 aa6.5□□□□□ -1.37
LIMA1-215ENST00000552823 LMOD1P29536 600 aaPredicted RBP6.5□□□□□ -1.37
LIMA1-215ENST00000552823 WTAPQ15007 396 aa6.5□□□□□ -1.37
LIMA1-215ENST00000552823 FAM196AQ6ZSG2 479 aa6.5□□□□□ -1.37
LIMA1-215ENST00000552823 GRAMD1CQ8IYS0 662 aa6.5□□□□□ -1.37
LIMA1-215ENST00000552823 VSIG10Q8N0Z9 540 aa6.5□□□□□ -1.37
LIMA1-215ENST00000552823 FAM200AQ8TCP9 573 aa6.5□□□□□ -1.37
LIMA1-215ENST00000552823 C16orf45Q96MC5 204 aaPredicted RBP6.5□□□□□ -1.37
LIMA1-215ENST00000552823 CDC5LQ99459 802 aaKnown RBP6.5□□□□□ -1.37
LIMA1-215ENST00000552823 VPS54Q9P1Q0 977 aa6.5□□□□□ -1.37
LIMA1-215ENST00000552823 GSG1L2A8MUP6 293 aa6.49□□□□□ -1.37
LIMA1-215ENST00000552823 DHX16O60231 1041 aaKnown RBP6.49□□□□□ -1.37
LIMA1-215ENST00000552823 CASP1P29466 404 aa6.49□□□□□ -1.37
LIMA1-215ENST00000552823 ATP2B2Q01814 1243 aa6.49□□□□□ -1.37
LIMA1-215ENST00000552823 TTF1Q15361 905 aaPredicted RBP6.49□□□□□ -1.37
LIMA1-215ENST00000552823 KLHL10Q6JEL2 608 aa6.49□□□□□ -1.37
LIMA1-215ENST00000552823 APOA5Q6Q788 366 aa6.49□□□□□ -1.37
LIMA1-215ENST00000552823 PLIN2Q99541 437 aa6.49□□□□□ -1.37
LIMA1-215ENST00000552823 CLSTN2Q9H4D0 955 aa6.49□□□□□ -1.37
LIMA1-215ENST00000552823 NOL7Q9UMY1 257 aaKnown RBP6.49□□□□□ -1.37
LIMA1-215ENST00000552823 ZNF652Q9Y2D9 606 aa6.49□□□□□ -1.37
LIMA1-215ENST00000552823 V9GY48 417 aaPredicted RBP6.49□□□□□ -1.37
LIMA1-215ENST00000552823 PATL2C9JE40 543 aaKnown RBP6.49□□□□□ -1.37
LIMA1-215ENST00000552823 FOXN1O15353 648 aa6.49□□□□□ -1.37
LIMA1-215ENST00000552823 RPS8P62241 208 aaKnown RBP6.49□□□□□ -1.37
LIMA1-215ENST00000552823 SSRP1Q08945 709 aaKnown RBP6.49□□□□□ -1.37
LIMA1-215ENST00000552823 MYSM1Q5VVJ2 828 aa6.49□□□□□ -1.37
LIMA1-215ENST00000552823 OLFM4Q6UX06 510 aa6.49□□□□□ -1.37
LIMA1-215ENST00000552823 ILDR1Q86SU0 546 aaPredicted RBP6.49□□□□□ -1.37
LIMA1-215ENST00000552823 HOMEZQ8IX15 550 aa6.49□□□□□ -1.37
LIMA1-215ENST00000552823 FAM177A1Q8N128 213 aaPredicted RBP6.49□□□□□ -1.37
LIMA1-215ENST00000552823 OXER1Q8TDS5 423 aa6.49□□□□□ -1.37
LIMA1-215ENST00000552823 DYNLL2Q96FJ2 89 aa6.49□□□□□ -1.37
LIMA1-215ENST00000552823 CABP5Q9NP86 173 aa6.49□□□□□ -1.37
LIMA1-215ENST00000552823 GNL3LQ9NVN8 582 aaKnown RBP6.49□□□□□ -1.37
LIMA1-215ENST00000552823 LMO7Q8WWI1 1683 aa6.49□□□□□ -1.37
LIMA1-215ENST00000552823 C6orf229H3BNL8 230 aa6.49□□□□□ -1.37
LIMA1-215ENST00000552823 LETM1O95202 739 aaPredicted RBP6.49□□□□□ -1.37
LIMA1-215ENST00000552823 NTSR2O95665 410 aa6.49□□□□□ -1.37
LIMA1-215ENST00000552823 SLURP2P0DP57 97 aa6.49□□□□□ -1.37
LIMA1-215ENST00000552823 AFMP43652 599 aa6.49□□□□□ -1.37
LIMA1-215ENST00000552823 EIF6P56537 245 aaKnown RBP6.49□□□□□ -1.37
LIMA1-215ENST00000552823 GRIN1Q05586 938 aa6.49□□□□□ -1.37
LIMA1-215ENST00000552823 RTN1Q16799 776 aa6.49□□□□□ -1.37
LIMA1-215ENST00000552823 TSGA10IPQ3SY00 556 aa6.49□□□□□ -1.37
LIMA1-215ENST00000552823 NOM1Q5C9Z4 860 aaKnown RBP6.49□□□□□ -1.37
LIMA1-215ENST00000552823 VGLL2Q8N8G2 317 aa6.49□□□□□ -1.37
LIMA1-215ENST00000552823 SLC44A5Q8NCS7 719 aa6.49□□□□□ -1.37
LIMA1-215ENST00000552823 FBXO18Q8NFZ0 1043 aa6.49□□□□□ -1.37
LIMA1-215ENST00000552823 SMARCC2Q8TAQ2 1214 aa6.49□□□□□ -1.37
LIMA1-215ENST00000552823 ZNF274Q96GC6 653 aaPredicted RBP6.49□□□□□ -1.37
LIMA1-215ENST00000552823 ZSCAN16Q9H4T2 348 aaPredicted RBP6.49□□□□□ -1.37
LIMA1-215ENST00000552823 DDX19AQ9NUU7 478 aaKnown RBP6.49□□□□□ -1.37
LIMA1-215ENST00000552823 MCM9Q9NXL9 1143 aa6.49□□□□□ -1.37
LIMA1-215ENST00000552823 CLIP2Q9UDT6 1046 aa6.49□□□□□ -1.37
LIMA1-215ENST00000552823 MINPP1Q9UNW1 487 aa6.49□□□□□ -1.37
LIMA1-215ENST00000552823 RTCBQ9Y3I0 505 aaKnown RBP6.49□□□□□ -1.37
LIMA1-215ENST00000552823 EP400Q96L91 3159 aa6.48□□□□□ -1.37
LIMA1-215ENST00000552823 BCL9O00512 1426 aa6.48□□□□□ -1.37
LIMA1-215ENST00000552823 CDC25AP30304 524 aa6.48□□□□□ -1.37
LIMA1-215ENST00000552823 PNOCQ13519 176 aa6.48□□□□□ -1.37
LIMA1-215ENST00000552823 NOLC1Q14978 699 aaKnown RBP eCLIP6.48□□□□□ -1.37
LIMA1-215ENST00000552823 AKNAD1Q5T1N1 836 aa6.48□□□□□ -1.37
LIMA1-215ENST00000552823 MSL1Q68DK7 614 aa6.48□□□□□ -1.37
LIMA1-215ENST00000552823 DZIP1Q86YF9 867 aaKnown RBP6.48□□□□□ -1.37
LIMA1-215ENST00000552823 MRPS27Q92552 414 aaKnown RBP6.48□□□□□ -1.37
LIMA1-215ENST00000552823 ARHGEF1Q92888 912 aaKnown RBP6.48□□□□□ -1.37
LIMA1-215ENST00000552823 NOL12Q9UGY1 213 aaKnown RBP eCLIP6.48□□□□□ -1.37
LIMA1-215ENST00000552823 V9GYY5 206 aaPredicted RBP6.48□□□□□ -1.37
LIMA1-215ENST00000552823 TRPM3Q9HCF6 1732 aaPredicted RBP6.48□□□□□ -1.37
LIMA1-215ENST00000552823 WDHD1O75717 1129 aaPredicted RBP6.48□□□□□ -1.37
LIMA1-215ENST00000552823 SLC3A2P08195 630 aaKnown RBP6.48□□□□□ -1.37
LIMA1-215ENST00000552823 USP17L8P0C7I0 530 aa6.48□□□□□ -1.37
LIMA1-215ENST00000552823 VEGFAP15692 232 aaPredicted RBP6.48□□□□□ -1.37
LIMA1-215ENST00000552823 USP5P45974 858 aa6.48□□□□□ -1.37
LIMA1-215ENST00000552823 STX17P56962 302 aa6.48□□□□□ -1.37
LIMA1-215ENST00000552823 PPARAQ07869 468 aa6.48□□□□□ -1.37
LIMA1-215ENST00000552823 DHX8Q14562 1220 aaKnown RBP6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms