RNA–Protein interactions for RNA: ENST00000550283.1

RAB5B-208, Transcript of RAB5B, member RAS oncogene family, human

TSL 3

Gene RAB5B, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RAB5B-208	ENST00000550283	HSPA1B	P0DMV9	641 aa	Known RBP	13.75	□□□□□ -0.21
RAB5B-208	ENST00000550283	MMP14	P50281	582 aa		13.75	□□□□□ -0.21
RAB5B-208	ENST00000550283	PRKG1	Q13976	671 aa		13.75	□□□□□ -0.21
RAB5B-208	ENST00000550283	HSP90AB4P	Q58FF6	505 aa		13.75	□□□□□ -0.21
RAB5B-208	ENST00000550283	MRI	Q9BWK5	157 aa		13.75	□□□□□ -0.21
RAB5B-208	ENST00000550283	GBA2	Q9HCG7	927 aa	Predicted RBP	13.75	□□□□□ -0.21
RAB5B-208	ENST00000550283	RFX7	Q2KHR2	1363 aa		13.74	□□□□□ -0.21
RAB5B-208	ENST00000550283	UBE2Q2L	H0YL09	131 aa		13.74	□□□□□ -0.21
RAB5B-208	ENST00000550283	AOC2	O75106	756 aa		13.74	□□□□□ -0.21
RAB5B-208	ENST00000550283	CCDC158	Q5M9N0	1113 aa		13.74	□□□□□ -0.21
RAB5B-208	ENST00000550283	APOBEC3F	Q8IUX4	373 aa	Known RBP	13.74	□□□□□ -0.21
RAB5B-208	ENST00000550283	CLASRP	Q8N2M8	674 aa	Known RBP	13.74	□□□□□ -0.21
RAB5B-208	ENST00000550283	LRRCC1	Q9C099	1032 aa		13.74	□□□□□ -0.21
RAB5B-208	ENST00000550283	DDX4	Q9NQI0	724 aa	Known RBP	13.74	□□□□□ -0.21
RAB5B-208	ENST00000550283	FAM198A	Q9UFP1	575 aa		13.74	□□□□□ -0.21
RAB5B-208	ENST00000550283	MYH2	Q9UKX2	1941 aa		13.74	□□□□□ -0.21
RAB5B-208	ENST00000550283	MROH7-TTC4	A0A0A0MT08	1334 aa		13.73	□□□□□ -0.21
RAB5B-208	ENST00000550283	RHBDL3	P58872	404 aa		13.73	□□□□□ -0.21
RAB5B-208	ENST00000550283	DEFB115	Q30KQ5	88 aa		13.73	□□□□□ -0.21
RAB5B-208	ENST00000550283	ERICH6	Q7L0X2	663 aa		13.73	□□□□□ -0.21
RAB5B-208	ENST00000550283	DZIP1	Q86YF9	867 aa	Known RBP	13.73	□□□□□ -0.21
RAB5B-208	ENST00000550283	RAI14	Q9P0K7	980 aa		13.73	□□□□□ -0.21
RAB5B-208	ENST00000550283	MAST3	O60307	1309 aa		13.72	□□□□□ -0.21
RAB5B-208	ENST00000550283	FAM155A	B1AL88	458 aa	Predicted RBP	13.72	□□□□□ -0.21
RAB5B-208	ENST00000550283	IFIT2	P09913	472 aa	Known RBP	13.72	□□□□□ -0.21
RAB5B-208	ENST00000550283	BTD	P43251	543 aa		13.72	□□□□□ -0.21
RAB5B-208	ENST00000550283	HUNK	P57058	714 aa		13.72	□□□□□ -0.21
RAB5B-208	ENST00000550283	TCP10	Q12799	353 aa		13.72	□□□□□ -0.21
RAB5B-208	ENST00000550283	GRM1	Q13255	1194 aa		13.72	□□□□□ -0.21
RAB5B-208	ENST00000550283	HDAC1	Q13547	482 aa	Predicted RBP	13.72	□□□□□ -0.21
RAB5B-208	ENST00000550283	SH3BP5L	Q7L8J4	393 aa		13.72	□□□□□ -0.21
RAB5B-208	ENST00000550283	FAM163A	Q96GL9	167 aa	Predicted RBP	13.72	□□□□□ -0.21
RAB5B-208	ENST00000550283	BOLA2	Q9H3K6	86 aa		13.72	□□□□□ -0.21
RAB5B-208	ENST00000550283	USP40	Q9NVE5	1235 aa		13.72	□□□□□ -0.21
RAB5B-208	ENST00000550283	GTF3C3	Q9Y5Q9	886 aa		13.72	□□□□□ -0.21
RAB5B-208	ENST00000550283	PAPPA2	Q9BXP8	1791 aa		13.72	□□□□□ -0.21
RAB5B-208	ENST00000550283	DOCK2	Q92608	1830 aa		13.71	□□□□□ -0.21
RAB5B-208	ENST00000550283	MAST2	Q6P0Q8	1798 aa		13.71	□□□□□ -0.21
RAB5B-208	ENST00000550283	SALL3	Q9BXA9	1300 aa		13.71	□□□□□ -0.21
RAB5B-208	ENST00000550283	WDR33	Q9C0J8	1336 aa	Known RBP	13.71	□□□□□ -0.21
RAB5B-208	ENST00000550283	GPR75-ASB3	A0A0A6YYF3	556 aa		13.71	□□□□□ -0.21
RAB5B-208	ENST00000550283	WDHD1	O75717	1129 aa	Predicted RBP	13.71	□□□□□ -0.21
RAB5B-208	ENST00000550283	DYNLL1	P63167	89 aa	Known RBP	13.71	□□□□□ -0.21
RAB5B-208	ENST00000550283	CLMN	Q96JQ2	1002 aa		13.71	□□□□□ -0.21
RAB5B-208	ENST00000550283	CAPNS2	Q96L46	248 aa		13.71	□□□□□ -0.21
RAB5B-208	ENST00000550283	LRP2BP	Q9P2M1	347 aa		13.71	□□□□□ -0.21
RAB5B-208	ENST00000550283		U3KPZ7	1027 aa	Predicted RBP	13.71	□□□□□ -0.21
RAB5B-208	ENST00000550283	GOLIM4	O00461	696 aa		13.7	□□□□□ -0.22
RAB5B-208	ENST00000550283	MYO1B	O43795	1136 aa		13.7	□□□□□ -0.22
RAB5B-208	ENST00000550283	USP2	O75604	605 aa	Predicted RBP	13.7	□□□□□ -0.22
RAB5B-208	ENST00000550283	ATP5J	P18859	108 aa		13.7	□□□□□ -0.22
RAB5B-208	ENST00000550283	ZGPAT	Q8N5A5	531 aa	Known RBP	13.7	□□□□□ -0.22
RAB5B-208	ENST00000550283	C2orf69	Q8N8R5	385 aa		13.7	□□□□□ -0.22
RAB5B-208	ENST00000550283	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	13.7	□□□□□ -0.22
RAB5B-208	ENST00000550283	DNAJC2	Q99543	621 aa	Known RBP	13.7	□□□□□ -0.22
RAB5B-208	ENST00000550283	THSD7B	Q9C0I4	1608 aa		13.7	□□□□□ -0.22
RAB5B-208	ENST00000550283	IDH1	O75874	414 aa	Known RBP	13.69	□□□□□ -0.22
RAB5B-208	ENST00000550283	MYCN	P04198	464 aa	Predicted RBP	13.69	□□□□□ -0.22
RAB5B-208	ENST00000550283	RGS3	P49796	1198 aa		13.69	□□□□□ -0.22
RAB5B-208	ENST00000550283	LDLRAD1	Q5T700	205 aa		13.69	□□□□□ -0.22
RAB5B-208	ENST00000550283	SPTY2D1	Q68D10	685 aa	Predicted RBP	13.69	□□□□□ -0.22
RAB5B-208	ENST00000550283	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	13.69	□□□□□ -0.22
RAB5B-208	ENST00000550283	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	13.69	□□□□□ -0.22
RAB5B-208	ENST00000550283	ANGEL1	Q9UNK9	670 aa	Known RBP	13.69	□□□□□ -0.22
RAB5B-208	ENST00000550283	ATRNL1	Q5VV63	1379 aa		13.69	□□□□□ -0.22
RAB5B-208	ENST00000550283	OTOF	Q9HC10	1997 aa		13.69	□□□□□ -0.22
RAB5B-208	ENST00000550283	TCRBV5S4A2T	A0A5A2	114 aa		13.68	□□□□□ -0.22
RAB5B-208	ENST00000550283	DDTL	A6NHG4	134 aa	Predicted RBP	13.68	□□□□□ -0.22
RAB5B-208	ENST00000550283	MAP4K4	O95819	1239 aa	Predicted RBP	13.68	□□□□□ -0.22
RAB5B-208	ENST00000550283	GJA5	P36382	358 aa		13.68	□□□□□ -0.22
RAB5B-208	ENST00000550283	ANKRD45	Q5TZF3	282 aa		13.68	□□□□□ -0.22
RAB5B-208	ENST00000550283	NAA16	Q6N069	864 aa	Predicted RBP	13.68	□□□□□ -0.22
RAB5B-208	ENST00000550283	RGMB	Q6NW40	437 aa		13.68	□□□□□ -0.22
RAB5B-208	ENST00000550283	RASAL3	Q86YV0	1011 aa		13.68	□□□□□ -0.22
RAB5B-208	ENST00000550283	SMC5	Q8IY18	1101 aa		13.68	□□□□□ -0.22
RAB5B-208	ENST00000550283	MAGEB6	Q8N7X4	407 aa		13.68	□□□□□ -0.22
RAB5B-208	ENST00000550283	MIGA1	Q8NAN2	632 aa		13.68	□□□□□ -0.22
RAB5B-208	ENST00000550283	PI4K2B	Q8TCG2	481 aa		13.68	□□□□□ -0.22
RAB5B-208	ENST00000550283	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	13.68	□□□□□ -0.22
RAB5B-208	ENST00000550283	HAUS7	Q99871	368 aa		13.68	□□□□□ -0.22
RAB5B-208	ENST00000550283	AATF	Q9NY61	560 aa	Known RBP eCLIP	13.68	□□□□□ -0.22
RAB5B-208	ENST00000550283	PPP2R3B	Q9Y5P8	575 aa		13.68	□□□□□ -0.22
RAB5B-208	ENST00000550283	CYP7A1	P22680	504 aa		13.67	□□□□□ -0.22
RAB5B-208	ENST00000550283	EVX2	Q03828	476 aa		13.67	□□□□□ -0.22
RAB5B-208	ENST00000550283	MKRN3	Q13064	507 aa	Known RBP	13.67	□□□□□ -0.22
RAB5B-208	ENST00000550283	PICALM	Q13492	652 aa		13.67	□□□□□ -0.22
RAB5B-208	ENST00000550283	TTLL12	Q14166	644 aa	Predicted RBP	13.67	□□□□□ -0.22
RAB5B-208	ENST00000550283	FKBP1C	Q5VVH2	108 aa		13.67	□□□□□ -0.22
RAB5B-208	ENST00000550283	B4GALNT3	Q6L9W6	998 aa		13.67	□□□□□ -0.22
RAB5B-208	ENST00000550283	MIGA2	Q7L4E1	593 aa		13.67	□□□□□ -0.22
RAB5B-208	ENST00000550283	FAM83A	Q86UY5	434 aa		13.67	□□□□□ -0.22
RAB5B-208	ENST00000550283	FAM151A	Q8WW52	585 aa		13.67	□□□□□ -0.22
RAB5B-208	ENST00000550283	IDI2	Q9BXS1	227 aa		13.67	□□□□□ -0.22
RAB5B-208	ENST00000550283	ECHDC1	Q9NTX5	307 aa		13.67	□□□□□ -0.22
RAB5B-208	ENST00000550283	FAM196B	A6NMK8	535 aa		13.66	□□□□□ -0.22
RAB5B-208	ENST00000550283	SLC10A3	P09131	477 aa		13.66	□□□□□ -0.22
RAB5B-208	ENST00000550283	PDE6A	P16499	860 aa		13.66	□□□□□ -0.22
RAB5B-208	ENST00000550283	ZNF157	P51786	506 aa	Predicted RBP	13.66	□□□□□ -0.22
RAB5B-208	ENST00000550283	MAP3K11	Q16584	847 aa		13.66	□□□□□ -0.22
RAB5B-208	ENST00000550283	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	13.66	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 316.4 ms