RNA–Protein interactions for RNA: ENST00000549328.1

CHMP1A-207, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 3

Gene CHMP1A, Length 1,003 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-207ENST00000549328 DDX55Q8NHQ9 600 aaKnown RBP eCLIP23.02■■□□□ 1.28
CHMP1A-207ENST00000549328 GORABQ5T7V8 394 aa23.01■■□□□ 1.27
CHMP1A-207ENST00000549328 SLF2Q8IX21 1173 aa23.01■■□□□ 1.27
CHMP1A-207ENST00000549328 FAM151AQ8WW52 585 aa23.01■■□□□ 1.27
CHMP1A-207ENST00000549328 GPR108Q9NPR9 543 aa23.01■■□□□ 1.27
CHMP1A-207ENST00000549328 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.01■■□□□ 1.27
CHMP1A-207ENST00000549328 MS4A1P11836 297 aa23■■□□□ 1.27
CHMP1A-207ENST00000549328 IFNL1Q8IU54 200 aa23■■□□□ 1.27
CHMP1A-207ENST00000549328 FAM163AQ96GL9 167 aaPredicted RBP23■■□□□ 1.27
CHMP1A-207ENST00000549328 ABCF2Q9UG63 623 aa23■■□□□ 1.27
CHMP1A-207ENST00000549328 CSADQ9Y600 493 aa23■■□□□ 1.27
CHMP1A-207ENST00000549328 LAMB1P07942 1786 aa22.99■■□□□ 1.27
CHMP1A-207ENST00000549328 GJA5P36382 358 aa22.99■■□□□ 1.27
CHMP1A-207ENST00000549328 DCAF15Q66K64 600 aa22.99■■□□□ 1.27
CHMP1A-207ENST00000549328 OPTNQ96CV9 577 aa22.99■■□□□ 1.27
CHMP1A-207ENST00000549328 ELP3Q9H9T3 547 aa22.99■■□□□ 1.27
CHMP1A-207ENST00000549328 USP40Q9NVE5 1235 aa22.99■■□□□ 1.27
CHMP1A-207ENST00000549328 NOP58Q9Y2X3 529 aaKnown RBP22.99■■□□□ 1.27
CHMP1A-207ENST00000549328 GAKO14976 1311 aa22.99■■□□□ 1.27
CHMP1A-207ENST00000549328 TESPA1A2RU30 521 aaPredicted RBP22.98■■□□□ 1.27
CHMP1A-207ENST00000549328 GPR25O00155 361 aa22.98■■□□□ 1.27
CHMP1A-207ENST00000549328 SURF6O75683 361 aaKnown RBP22.98■■□□□ 1.27
CHMP1A-207ENST00000549328 ARID4AP29374 1257 aaPredicted RBP22.98■■□□□ 1.27
CHMP1A-207ENST00000549328 VGLL4Q14135 290 aa22.98■■□□□ 1.27
CHMP1A-207ENST00000549328 OTUD7BQ6GQQ9 843 aa22.98■■□□□ 1.27
CHMP1A-207ENST00000549328 CTU1Q7Z7A3 348 aaKnown RBP22.98■■□□□ 1.27
CHMP1A-207ENST00000549328 DZIP1Q86YF9 867 aaKnown RBP22.98■■□□□ 1.27
CHMP1A-207ENST00000549328 ZNF296Q8WUU4 475 aaPredicted RBP22.98■■□□□ 1.27
CHMP1A-207ENST00000549328 C1orf115Q9H7X2 142 aa22.98■■□□□ 1.27
CHMP1A-207ENST00000549328 HMG20BQ9P0W2 317 aa22.98■■□□□ 1.27
CHMP1A-207ENST00000549328 UQCRFS1P1P0C7P4 283 aa22.97■■□□□ 1.27
CHMP1A-207ENST00000549328 OS9Q13438 667 aaPredicted RBP22.97■■□□□ 1.27
CHMP1A-207ENST00000549328 ERICH6Q7L0X2 663 aa22.97■■□□□ 1.27
CHMP1A-207ENST00000549328 SPATA5Q8NB90 893 aa22.97■■□□□ 1.27
CHMP1A-207ENST00000549328 OTOFQ9HC10 1997 aa22.97■■□□□ 1.27
CHMP1A-207ENST00000549328 IGF2BP3O00425 579 aaKnown RBP eCLIP22.96■■□□□ 1.27
CHMP1A-207ENST00000549328 NFIAQ12857 509 aa22.96■■□□□ 1.27
CHMP1A-207ENST00000549328 PANK1Q8TE04 598 aa22.96■■□□□ 1.27
CHMP1A-207ENST00000549328 IDI2Q9BXS1 227 aa22.96■■□□□ 1.27
CHMP1A-207ENST00000549328 FAM198AQ9UFP1 575 aa22.96■■□□□ 1.27
CHMP1A-207ENST00000549328 CCDC85CA6NKD9 419 aa22.95■■□□□ 1.26
CHMP1A-207ENST00000549328 TCP10Q12799 353 aa22.95■■□□□ 1.26
CHMP1A-207ENST00000549328 TNNI3KQ59H18 835 aa22.95■■□□□ 1.26
CHMP1A-207ENST00000549328 MS4A4AQ96JQ5 239 aa22.95■■□□□ 1.26
CHMP1A-207ENST00000549328 WRNIP1Q96S55 665 aa22.95■■□□□ 1.26
CHMP1A-207ENST00000549328 ZNF341Q9BYN7 854 aa22.95■■□□□ 1.26
CHMP1A-207ENST00000549328 MYH2Q9UKX2 1941 aa22.95■■□□□ 1.26
CHMP1A-207ENST00000549328 FPGT-TNNI3KV9GXZ4 949 aa22.95■■□□□ 1.26
CHMP1A-207ENST00000549328 SPDYE5A6NIY4 337 aa22.94■■□□□ 1.26
CHMP1A-207ENST00000549328 ENTPD3O75355 529 aa22.94■■□□□ 1.26
CHMP1A-207ENST00000549328 MECOMQ03112 1051 aa22.94■■□□□ 1.26
CHMP1A-207ENST00000549328 PKN2Q16513 984 aaKnown RBP22.94■■□□□ 1.26
CHMP1A-207ENST00000549328 ERO1BQ86YB8 467 aa22.94■■□□□ 1.26
CHMP1A-207ENST00000549328 R3HDMLQ9H3Y0 253 aa22.94■■□□□ 1.26
CHMP1A-207ENST00000549328 MROH7-TTC4A0A0A0MT08 1334 aa22.93■■□□□ 1.26
CHMP1A-207ENST00000549328 FKTNO75072 461 aa22.93■■□□□ 1.26
CHMP1A-207ENST00000549328 MCAMP43121 646 aa22.93■■□□□ 1.26
CHMP1A-207ENST00000549328 GTF2A2P52657 109 aa22.93■■□□□ 1.26
CHMP1A-207ENST00000549328 CCDC158Q5M9N0 1113 aa22.93■■□□□ 1.26
CHMP1A-207ENST00000549328 CEP85Q6P2H3 762 aa22.93■■□□□ 1.26
CHMP1A-207ENST00000549328 MIGA2Q7L4E1 593 aa22.93■■□□□ 1.26
CHMP1A-207ENST00000549328 CNKSR2Q8WXI2 1034 aa22.93■■□□□ 1.26
CHMP1A-207ENST00000549328 PTPN18Q99952 460 aa22.93■■□□□ 1.26
CHMP1A-207ENST00000549328 SNCAIPQ9Y6H5 919 aa22.93■■□□□ 1.26
CHMP1A-207ENST00000549328 GPR75-ASB3A0A0A6YYF3 556 aa22.92■■□□□ 1.26
CHMP1A-207ENST00000549328 LDHCP07864 332 aa22.92■■□□□ 1.26
CHMP1A-207ENST00000549328 GSTO1P78417 241 aa22.92■■□□□ 1.26
CHMP1A-207ENST00000549328 PI16Q6UXB8 463 aa22.92■■□□□ 1.26
CHMP1A-207ENST00000549328 ZKSCAN4Q969J2 545 aaPredicted RBP22.92■■□□□ 1.26
CHMP1A-207ENST00000549328 OTUD5Q96G74 571 aa22.92■■□□□ 1.26
CHMP1A-207ENST00000549328 ZNF512BQ96KM6 892 aaPredicted RBP22.92■■□□□ 1.26
CHMP1A-207ENST00000549328 ZNF112Q9UJU3 913 aa22.92■■□□□ 1.26
CHMP1A-207ENST00000549328 MAP4K4O95819 1239 aaPredicted RBP22.91■■□□□ 1.26
CHMP1A-207ENST00000549328 BTDP43251 543 aa22.91■■□□□ 1.26
CHMP1A-207ENST00000549328 RGS3P49796 1198 aa22.91■■□□□ 1.26
CHMP1A-207ENST00000549328 TBC1D9Q6ZT07 1266 aa22.91■■□□□ 1.26
CHMP1A-207ENST00000549328 ZNF384Q8TF68 577 aa22.91■■□□□ 1.26
CHMP1A-207ENST00000549328 NSUN4Q96CB9 384 aaKnown RBP22.91■■□□□ 1.26
CHMP1A-207ENST00000549328 DBNDD2Q9BQY9 259 aa22.91■■□□□ 1.26
CHMP1A-207ENST00000549328 RCAN3Q9UKA8 241 aa22.91■■□□□ 1.26
CHMP1A-207ENST00000549328 TTC39AQ5SRH9 613 aa22.9■■□□□ 1.26
CHMP1A-207ENST00000549328 ZFPM1Q8IX07 1006 aa22.9■■□□□ 1.26
CHMP1A-207ENST00000549328 BRI3BPQ8WY22 251 aa22.9■■□□□ 1.26
CHMP1A-207ENST00000549328 RFX7Q2KHR2 1363 aa22.89■■□□□ 1.26
CHMP1A-207ENST00000549328 AK9Q5TCS8 1911 aa22.89■■□□□ 1.25
CHMP1A-207ENST00000549328 CCL15-CCL14A0A0B4J2E2 113 aa22.89■■□□□ 1.25
CHMP1A-207ENST00000549328 IGSF3O75054 1194 aa22.89■■□□□ 1.25
CHMP1A-207ENST00000549328 NPM3O75607 178 aaKnown RBP22.89■■□□□ 1.25
CHMP1A-207ENST00000549328 WDHD1O75717 1129 aaPredicted RBP22.89■■□□□ 1.25
CHMP1A-207ENST00000549328 PPIL2Q13356 520 aa22.89■■□□□ 1.25
CHMP1A-207ENST00000549328 CCL15Q16663 113 aa22.89■■□□□ 1.25
CHMP1A-207ENST00000549328 RAI14Q9P0K7 980 aa22.89■■□□□ 1.25
CHMP1A-207ENST00000549328 LRP2BPQ9P2M1 347 aa22.89■■□□□ 1.25
CHMP1A-207ENST00000549328 DDX19BQ9UMR2 479 aa22.89■■□□□ 1.25
CHMP1A-207ENST00000549328 CETPP11597 493 aa22.88■■□□□ 1.25
CHMP1A-207ENST00000549328 INPP5BP32019 993 aa22.88■■□□□ 1.25
CHMP1A-207ENST00000549328 RHBDL3P58872 404 aa22.88■■□□□ 1.25
CHMP1A-207ENST00000549328 PPATQ06203 517 aa22.88■■□□□ 1.25
CHMP1A-207ENST00000549328 CRHR2Q13324 411 aa22.88■■□□□ 1.25
CHMP1A-207ENST00000549328 ERC1Q8IUD2 1116 aa22.88■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms