RNA–Protein interactions for RNA: ENST00000549139.5

CHMP1A-206, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 812 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-206ENST00000549139 MAP3K9P80192 1104 aa19.52■□□□□ 0.72
CHMP1A-206ENST00000549139 TMEM39BQ9GZU3 492 aa19.52■□□□□ 0.72
CHMP1A-206ENST00000549139 COPRSQ9NQ92 184 aa19.52■□□□□ 0.72
CHMP1A-206ENST00000549139 TTF2Q9UNY4 1162 aaKnown RBP19.52■□□□□ 0.72
CHMP1A-206ENST00000549139 SRGAP3O43295 1099 aa19.51■□□□□ 0.71
CHMP1A-206ENST00000549139 CIAO1O76071 339 aa19.51■□□□□ 0.71
CHMP1A-206ENST00000549139 PDE8BO95263 885 aa19.51■□□□□ 0.71
CHMP1A-206ENST00000549139 METTL24Q5JXM2 366 aa19.51■□□□□ 0.71
CHMP1A-206ENST00000549139 MFSD14BQ5SR56 506 aa19.51■□□□□ 0.71
CHMP1A-206ENST00000549139 SH3TC2Q8TF17 1288 aa19.51■□□□□ 0.71
CHMP1A-206ENST00000549139 LAMA3Q16787 3333 aa19.51■□□□□ 0.71
CHMP1A-206ENST00000549139 SPDYE5A6NIY4 337 aa19.5■□□□□ 0.71
CHMP1A-206ENST00000549139 TLR2O60603 784 aa19.5■□□□□ 0.71
CHMP1A-206ENST00000549139 LACTBP83111 547 aaPredicted RBP19.5■□□□□ 0.71
CHMP1A-206ENST00000549139 PDE3AQ14432 1141 aa19.5■□□□□ 0.71
CHMP1A-206ENST00000549139 MVPQ14764 893 aaKnown RBP19.5■□□□□ 0.71
CHMP1A-206ENST00000549139 ATG9AQ7Z3C6 839 aa19.5■□□□□ 0.71
CHMP1A-206ENST00000549139 VGLL2Q8N8G2 317 aa19.5■□□□□ 0.71
CHMP1A-206ENST00000549139 TCP10L2B9ZVM9 353 aa19.49■□□□□ 0.71
CHMP1A-206ENST00000549139 MYCP01106 439 aaPredicted RBP19.49■□□□□ 0.71
CHMP1A-206ENST00000549139 ATP8B2P98198 1209 aa19.49■□□□□ 0.71
CHMP1A-206ENST00000549139 ZCCHC17Q9NP64 241 aaKnown RBP19.49■□□□□ 0.71
CHMP1A-206ENST00000549139 DDX19BQ9UMR2 479 aa19.49■□□□□ 0.71
CHMP1A-206ENST00000549139 IL15P40933 162 aaPredicted RBP19.48■□□□□ 0.71
CHMP1A-206ENST00000549139 CRKP46108 304 aa19.48■□□□□ 0.71
CHMP1A-206ENST00000549139 SHISA4Q96DD7 197 aa19.48■□□□□ 0.71
CHMP1A-206ENST00000549139 FAM84BQ96KN1 310 aaPredicted RBP19.48■□□□□ 0.71
CHMP1A-206ENST00000549139 PA2G4Q9UQ80 394 aaKnown RBP19.48■□□□□ 0.71
CHMP1A-206ENST00000549139 COG6Q9Y2V7 657 aa19.48■□□□□ 0.71
CHMP1A-206ENST00000549139 CSADQ9Y600 493 aa19.48■□□□□ 0.71
CHMP1A-206ENST00000549139 SNCAIPQ9Y6H5 919 aa19.48■□□□□ 0.71
CHMP1A-206ENST00000549139 A0A0C4DFX4 3053 aa19.48■□□□□ 0.71
CHMP1A-206ENST00000549139 PNMA6EA0A0J9YXQ4 647 aa19.47■□□□□ 0.71
CHMP1A-206ENST00000549139 BTBD19C9JJ37 291 aa19.47■□□□□ 0.71
CHMP1A-206ENST00000549139 GNRH1P01148 92 aa19.47■□□□□ 0.71
CHMP1A-206ENST00000549139 GYG1P46976 350 aa19.47■□□□□ 0.71
CHMP1A-206ENST00000549139 GRIK5Q16478 980 aa19.47■□□□□ 0.71
CHMP1A-206ENST00000549139 CHRDL2Q6WN34 429 aa19.47■□□□□ 0.71
CHMP1A-206ENST00000549139 SIL1Q9H173 461 aa19.47■□□□□ 0.71
CHMP1A-206ENST00000549139 CHMP4BQ9H444 224 aaKnown RBP19.47■□□□□ 0.71
CHMP1A-206ENST00000549139 CETPP11597 493 aa19.46■□□□□ 0.71
CHMP1A-206ENST00000549139 FGFR2P21802 821 aa19.46■□□□□ 0.71
CHMP1A-206ENST00000549139 CTGFP29279 349 aa19.46■□□□□ 0.71
CHMP1A-206ENST00000549139 HIBADHP31937 336 aaKnown RBP19.46■□□□□ 0.71
CHMP1A-206ENST00000549139 TNNI2P48788 182 aa19.46■□□□□ 0.71
CHMP1A-206ENST00000549139 ERO1BQ86YB8 467 aa19.46■□□□□ 0.71
CHMP1A-206ENST00000549139 CEP126Q9P2H0 1117 aa19.46■□□□□ 0.71
CHMP1A-206ENST00000549139 IRF6O14896 467 aa19.45■□□□□ 0.7
CHMP1A-206ENST00000549139 PRMT2P55345 433 aa19.45■□□□□ 0.7
CHMP1A-206ENST00000549139 POLA2Q14181 598 aa19.45■□□□□ 0.7
CHMP1A-206ENST00000549139 KIF22Q14807 665 aa19.45■□□□□ 0.7
CHMP1A-206ENST00000549139 MTFR1Q15390 333 aa19.45■□□□□ 0.7
CHMP1A-206ENST00000549139 PUM3Q15397 648 aaKnown RBP19.45■□□□□ 0.7
CHMP1A-206ENST00000549139 C17orf99Q6UX52 265 aa19.45■□□□□ 0.7
CHMP1A-206ENST00000549139 UBE2Q1Q7Z7E8 422 aa19.45■□□□□ 0.7
CHMP1A-206ENST00000549139 SSH3Q8TE77 659 aa19.45■□□□□ 0.7
CHMP1A-206ENST00000549139 PRO3102Q9H379 93 aa19.45■□□□□ 0.7
CHMP1A-206ENST00000549139 C1orf115Q9H7X2 142 aa19.45■□□□□ 0.7
CHMP1A-206ENST00000549139 RBM27Q9P2N5 1060 aaKnown RBP19.45■□□□□ 0.7
CHMP1A-206ENST00000549139 COL6A3P12111 3177 aa19.44■□□□□ 0.7
CHMP1A-206ENST00000549139 WDHD1O75717 1129 aaPredicted RBP19.44■□□□□ 0.7
CHMP1A-206ENST00000549139 IFIT1P09914 478 aaKnown RBP19.44■□□□□ 0.7
CHMP1A-206ENST00000549139 HDLBPQ00341 1268 aaKnown RBP19.44■□□□□ 0.7
CHMP1A-206ENST00000549139 C20orf194Q5TEA3 1177 aa19.44■□□□□ 0.7
CHMP1A-206ENST00000549139 FBXO33Q7Z6M2 555 aa19.44■□□□□ 0.7
CHMP1A-206ENST00000549139 MYH13Q9UKX3 1938 aa19.43■□□□□ 0.7
CHMP1A-206ENST00000549139 PPIL2Q13356 520 aa19.43■□□□□ 0.7
CHMP1A-206ENST00000549139 SNAPC2Q13487 334 aa19.43■□□□□ 0.7
CHMP1A-206ENST00000549139 CAVIN4Q5BKX8 364 aa19.43■□□□□ 0.7
CHMP1A-206ENST00000549139 LPIN2Q92539 896 aa19.43■□□□□ 0.7
CHMP1A-206ENST00000549139 ZKSCAN4Q969J2 545 aaPredicted RBP19.43■□□□□ 0.7
CHMP1A-206ENST00000549139 WRNIP1Q96S55 665 aa19.43■□□□□ 0.7
CHMP1A-206ENST00000549139 ZBTB40Q9NUA8 1239 aa19.43■□□□□ 0.7
CHMP1A-206ENST00000549139 SLC5A1P13866 664 aa19.42■□□□□ 0.7
CHMP1A-206ENST00000549139 CACNB3P54284 484 aa19.42■□□□□ 0.7
CHMP1A-206ENST00000549139 G3BP1Q13283 466 aaKnown RBP eCLIP19.42■□□□□ 0.7
CHMP1A-206ENST00000549139 SRRDQ9UH36 339 aa19.42■□□□□ 0.7
CHMP1A-206ENST00000549139 ADGRA2Q96PE1 1338 aa19.42■□□□□ 0.7
CHMP1A-206ENST00000549139 CEP85Q6P2H3 762 aa19.41■□□□□ 0.7
CHMP1A-206ENST00000549139 FAM83AQ86UY5 434 aa19.41■□□□□ 0.7
CHMP1A-206ENST00000549139 TRIM47Q96LD4 638 aa19.41■□□□□ 0.7
CHMP1A-206ENST00000549139 GJA8P48165 433 aa19.4■□□□□ 0.7
CHMP1A-206ENST00000549139 ATP2B3Q16720 1220 aa19.4■□□□□ 0.7
CHMP1A-206ENST00000549139 FKBP1CQ5VVH2 108 aa19.4■□□□□ 0.7
CHMP1A-206ENST00000549139 VPS37DQ86XT2 251 aa19.4■□□□□ 0.7
CHMP1A-206ENST00000549139 RPAP2Q8IXW5 612 aaPredicted RBP19.4■□□□□ 0.7
CHMP1A-206ENST00000549139 DPF3Q92784 378 aa19.4■□□□□ 0.7
CHMP1A-206ENST00000549139 MRIQ9BWK5 157 aa19.4■□□□□ 0.7
CHMP1A-206ENST00000549139 CPA4Q9UI42 421 aa19.4■□□□□ 0.7
CHMP1A-206ENST00000549139 AKAP2Q9Y2D5 859 aa19.4■□□□□ 0.7
CHMP1A-206ENST00000549139 GJB1P08034 283 aa19.39■□□□□ 0.69
CHMP1A-206ENST00000549139 OSBPP22059 807 aa19.39■□□□□ 0.69
CHMP1A-206ENST00000549139 PSMC4P43686 418 aa19.39■□□□□ 0.69
CHMP1A-206ENST00000549139 RRP1P56182 461 aaKnown RBP19.39■□□□□ 0.69
CHMP1A-206ENST00000549139 PPATQ06203 517 aa19.39■□□□□ 0.69
CHMP1A-206ENST00000549139 APOBEC3HQ6NTF7 200 aaKnown RBP19.39■□□□□ 0.69
CHMP1A-206ENST00000549139 TEKT1Q969V4 418 aa19.39■□□□□ 0.69
CHMP1A-206ENST00000549139 ZDHHC15Q96MV8 337 aa19.39■□□□□ 0.69
CHMP1A-206ENST00000549139 NOP58Q9Y2X3 529 aaKnown RBP19.39■□□□□ 0.69
CHMP1A-206ENST00000549139 RPAP1Q9BWH6 1393 aaPredicted RBP19.39■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms