RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 ALDH1A1P00352 501 aa10.44□□□□□ -0.74
VPS29-203ENST00000546588 PIP4K2AP48426 406 aaPredicted RBP10.44□□□□□ -0.74
VPS29-203ENST00000546588 AIMP1Q12904 312 aaKnown RBP10.44□□□□□ -0.74
VPS29-203ENST00000546588 FOXD4L5Q5VV16 416 aaPredicted RBP10.44□□□□□ -0.74
VPS29-203ENST00000546588 POTEAQ6S8J7 498 aa10.44□□□□□ -0.74
VPS29-203ENST00000546588 FOXD4L4Q8WXT5 416 aaPredicted RBP10.44□□□□□ -0.74
VPS29-203ENST00000546588 NUDT12Q9BQG2 462 aa10.44□□□□□ -0.74
VPS29-203ENST00000546588 VRTNQ9H8Y1 702 aa10.44□□□□□ -0.74
VPS29-203ENST00000546588 CWC25Q9NXE8 425 aaPredicted RBP10.44□□□□□ -0.74
VPS29-203ENST00000546588 TNRC6CQ9HCJ0 1690 aaKnown RBP10.44□□□□□ -0.74
VPS29-203ENST00000546588 RTL9Q8NET4 1388 aa10.43□□□□□ -0.74
VPS29-203ENST00000546588 ANKRD31Q8N7Z5 1873 aa10.43□□□□□ -0.74
VPS29-203ENST00000546588 UBN2Q6ZU65 1347 aa10.43□□□□□ -0.74
VPS29-203ENST00000546588 PNMA6EA0A0J9YXQ4 647 aa10.43□□□□□ -0.74
VPS29-203ENST00000546588 ZBBXA8MT70 800 aa10.43□□□□□ -0.74
VPS29-203ENST00000546588 PCCAP05165 728 aaPredicted RBP10.43□□□□□ -0.74
VPS29-203ENST00000546588 CTHP32929 405 aa10.43□□□□□ -0.74
VPS29-203ENST00000546588 SUCLG2Q96I99 432 aa10.43□□□□□ -0.74
VPS29-203ENST00000546588 C9orf78Q9NZ63 289 aaPredicted RBP10.43□□□□□ -0.74
VPS29-203ENST00000546588 FKBPLQ9UIM3 349 aa10.43□□□□□ -0.74
VPS29-203ENST00000546588 CCNL1Q9UK58 526 aaPredicted RBP10.43□□□□□ -0.74
VPS29-203ENST00000546588 IVNS1ABPQ9Y6Y0 642 aa10.43□□□□□ -0.74
VPS29-203ENST00000546588 LRRC37AA6NMS7 1700 aa10.43□□□□□ -0.74
VPS29-203ENST00000546588 PIK3CDO00329 1044 aa10.42□□□□□ -0.74
VPS29-203ENST00000546588 FAM182BQ5T319 152 aa10.42□□□□□ -0.74
VPS29-203ENST00000546588 PPP1R42Q7Z4L9 355 aa10.42□□□□□ -0.74
VPS29-203ENST00000546588 CHD1LQ86WJ1 897 aa10.42□□□□□ -0.74
VPS29-203ENST00000546588 DZIP3Q86Y13 1208 aaKnown RBP10.42□□□□□ -0.74
VPS29-203ENST00000546588 ZBTB38Q8NAP3 1195 aaPredicted RBP10.42□□□□□ -0.74
VPS29-203ENST00000546588 OSBPL3Q9H4L5 887 aa10.42□□□□□ -0.74
VPS29-203ENST00000546588 COPRSQ9NQ92 184 aa10.42□□□□□ -0.74
VPS29-203ENST00000546588 BCCIPQ9P287 314 aaKnown RBP eCLIP10.42□□□□□ -0.74
VPS29-203ENST00000546588 MAP10Q9P2G4 905 aa10.42□□□□□ -0.74
VPS29-203ENST00000546588 DLEC1Q9Y238 1755 aa10.42□□□□□ -0.74
VPS29-203ENST00000546588 RAB11FIP3O75154 756 aa10.41□□□□□ -0.74
VPS29-203ENST00000546588 SKIP12755 728 aa10.41□□□□□ -0.74
VPS29-203ENST00000546588 RFX5P48382 616 aaPredicted RBP10.41□□□□□ -0.74
VPS29-203ENST00000546588 FOXO4P98177 505 aa10.41□□□□□ -0.74
VPS29-203ENST00000546588 HLFQ16534 295 aa10.41□□□□□ -0.74
VPS29-203ENST00000546588 PARP10Q53GL7 1025 aa10.41□□□□□ -0.74
VPS29-203ENST00000546588 TRIM46Q7Z4K8 759 aa10.41□□□□□ -0.74
VPS29-203ENST00000546588 NLRP10Q86W26 655 aa10.41□□□□□ -0.74
VPS29-203ENST00000546588 BICC1Q9H694 974 aaKnown RBP10.41□□□□□ -0.74
VPS29-203ENST00000546588 LRRC4BQ9NT99 713 aa10.41□□□□□ -0.74
VPS29-203ENST00000546588 NARFQ9UHQ1 456 aa10.41□□□□□ -0.74
VPS29-203ENST00000546588 KIF13BQ9NQT8 1826 aa10.41□□□□□ -0.74
VPS29-203ENST00000546588 MYH7P12883 1935 aa10.41□□□□□ -0.74
VPS29-203ENST00000546588 DOCK2Q92608 1830 aa10.4□□□□□ -0.74
VPS29-203ENST00000546588 AOX1Q06278 1338 aa10.4□□□□□ -0.74
VPS29-203ENST00000546588 USP42Q9H9J4 1324 aaKnown RBP10.4□□□□□ -0.74
VPS29-203ENST00000546588 CSF1RP07333 972 aa10.4□□□□□ -0.74
VPS29-203ENST00000546588 SSFA2P28290 1259 aa10.4□□□□□ -0.74
VPS29-203ENST00000546588 HSP90AB4PQ58FF6 505 aa10.4□□□□□ -0.74
VPS29-203ENST00000546588 ZNF652Q9Y2D9 606 aa10.4□□□□□ -0.74
VPS29-203ENST00000546588 LTBP1Q14766 1721 aa10.4□□□□□ -0.74
VPS29-203ENST00000546588 AKAP11Q9UKA4 1901 aa10.39□□□□□ -0.75
VPS29-203ENST00000546588 TMEM88BA6NKF7 163 aa10.39□□□□□ -0.75
VPS29-203ENST00000546588 SRGAP3O43295 1099 aa10.39□□□□□ -0.75
VPS29-203ENST00000546588 LORP23490 312 aaPredicted RBP10.39□□□□□ -0.75
VPS29-203ENST00000546588 SH3BP2P78314 561 aa10.39□□□□□ -0.75
VPS29-203ENST00000546588 NXF1Q9UBU9 619 aaKnown RBP10.39□□□□□ -0.75
VPS29-203ENST00000546588 ATP5J2-PTCD1G3V325 749 aa10.38□□□□□ -0.75
VPS29-203ENST00000546588 NTSR2O95665 410 aa10.38□□□□□ -0.75
VPS29-203ENST00000546588 BMP2KLQ5H9B9 411 aa10.38□□□□□ -0.75
VPS29-203ENST00000546588 EPHA10Q5JZY3 1008 aa10.38□□□□□ -0.75
VPS29-203ENST00000546588 UBE3BQ7Z3V4 1068 aa10.38□□□□□ -0.75
VPS29-203ENST00000546588 ERC1Q8IUD2 1116 aa10.38□□□□□ -0.75
VPS29-203ENST00000546588 NPAS3Q8IXF0 933 aa10.38□□□□□ -0.75
VPS29-203ENST00000546588 DEPDC4Q8N2C3 294 aa10.38□□□□□ -0.75
VPS29-203ENST00000546588 EHBP1Q8NDI1 1231 aa10.38□□□□□ -0.75
VPS29-203ENST00000546588 MYH13Q9UKX3 1938 aa10.38□□□□□ -0.75
VPS29-203ENST00000546588 KIAA1551Q9HCM1 1747 aa10.38□□□□□ -0.75
VPS29-203ENST00000546588 TAF1P21675 1872 aa10.38□□□□□ -0.75
VPS29-203ENST00000546588 USP17L3A6NCW0 530 aa10.37□□□□□ -0.75
VPS29-203ENST00000546588 USP17L4A6NCW7 530 aa10.37□□□□□ -0.75
VPS29-203ENST00000546588 CIAO1O76071 339 aa10.37□□□□□ -0.75
VPS29-203ENST00000546588 TRIM37O94972 964 aa10.37□□□□□ -0.75
VPS29-203ENST00000546588 COL11A2P13942 1736 aaPredicted RBP10.37□□□□□ -0.75
VPS29-203ENST00000546588 RBM25P49756 843 aaKnown RBP10.37□□□□□ -0.75
VPS29-203ENST00000546588 PTPN12Q05209 780 aaKnown RBP10.37□□□□□ -0.75
VPS29-203ENST00000546588 TXNRD1Q16881 649 aa10.37□□□□□ -0.75
VPS29-203ENST00000546588 C8orf34Q49A92 452 aa10.37□□□□□ -0.75
VPS29-203ENST00000546588 USP17L2Q6R6M4 530 aa10.37□□□□□ -0.75
VPS29-203ENST00000546588 USP17L1Q7RTZ2 530 aa10.37□□□□□ -0.75
VPS29-203ENST00000546588 AMIGO3Q86WK7 504 aa10.37□□□□□ -0.75
VPS29-203ENST00000546588 KIF1BPQ96EK5 621 aa10.37□□□□□ -0.75
VPS29-203ENST00000546588 LRRCC1Q9C099 1032 aa10.37□□□□□ -0.75
VPS29-203ENST00000546588 STAP2Q9UGK3 403 aa10.37□□□□□ -0.75
VPS29-203ENST00000546588 RTCBQ9Y3I0 505 aaKnown RBP10.37□□□□□ -0.75
VPS29-203ENST00000546588 COL4A1P02462 1669 aa10.37□□□□□ -0.75
VPS29-203ENST00000546588 SH3TC1Q8TE82 1336 aa10.36□□□□□ -0.75
VPS29-203ENST00000546588 ZNF609O15014 1411 aa10.36□□□□□ -0.75
VPS29-203ENST00000546588 USP17L5A8MUK1 530 aa10.36□□□□□ -0.75
VPS29-203ENST00000546588 CAPN5O15484 640 aaPredicted RBP10.36□□□□□ -0.75
VPS29-203ENST00000546588 F12P00748 615 aaPredicted RBP10.36□□□□□ -0.75
VPS29-203ENST00000546588 CCNYL3P0C7X3 344 aa10.36□□□□□ -0.75
VPS29-203ENST00000546588 BMP1P13497 986 aa10.36□□□□□ -0.75
VPS29-203ENST00000546588 PTPRNQ16849 979 aa10.36□□□□□ -0.75
VPS29-203ENST00000546588 PLEKHM2Q8IWE5 1019 aa10.36□□□□□ -0.75
VPS29-203ENST00000546588 RHPN1Q8TCX5 695 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms