RNA–Protein interactions for RNA: ENST00000543627.1

DDB1-222, Transcript of damage specific DNA binding protein 1, human

TSL 5

Gene DDB1, Length 540 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-222	ENST00000543627	JMY	Q8N9B5	988 aa		13.5	□□□□□ -0.25
DDB1-222	ENST00000543627	DNAJC2	Q99543	621 aa	Known RBP	13.5	□□□□□ -0.25
DDB1-222	ENST00000543627	NOL10	Q9BSC4	688 aa	Known RBP	13.5	□□□□□ -0.25
DDB1-222	ENST00000543627	BEGAIN	Q9BUH8	593 aa		13.5	□□□□□ -0.25
DDB1-222	ENST00000543627	ZBTB47	Q9UFB7	747 aa	Predicted RBP	13.5	□□□□□ -0.25
DDB1-222	ENST00000543627	IDH1	O75874	414 aa	Known RBP	13.49	□□□□□ -0.25
DDB1-222	ENST00000543627	CYP2E1	P05181	493 aa	Predicted RBP	13.49	□□□□□ -0.25
DDB1-222	ENST00000543627	LDHC	P07864	332 aa		13.49	□□□□□ -0.25
DDB1-222	ENST00000543627	GSTO1	P78417	241 aa		13.49	□□□□□ -0.25
DDB1-222	ENST00000543627	PICALM	Q13492	652 aa		13.49	□□□□□ -0.25
DDB1-222	ENST00000543627	NAA16	Q6N069	864 aa	Predicted RBP	13.49	□□□□□ -0.25
DDB1-222	ENST00000543627	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	13.49	□□□□□ -0.25
DDB1-222	ENST00000543627	CDAN1	Q8IWY9	1227 aa		13.49	□□□□□ -0.25
DDB1-222	ENST00000543627	CCDC102A	Q96A19	550 aa		13.49	□□□□□ -0.25
DDB1-222	ENST00000543627	PPP2R3B	Q9Y5P8	575 aa		13.49	□□□□□ -0.25
DDB1-222	ENST00000543627	ARAP2	Q8WZ64	1704 aa		13.49	□□□□□ -0.25
DDB1-222	ENST00000543627	PCNT	O95613	3336 aa		13.49	□□□□□ -0.25
DDB1-222	ENST00000543627	FKBP1B	P68106	108 aa		13.48	□□□□□ -0.25
DDB1-222	ENST00000543627	MIGA2	Q7L4E1	593 aa		13.48	□□□□□ -0.25
DDB1-222	ENST00000543627	EXOC6	Q8TAG9	804 aa		13.48	□□□□□ -0.25
DDB1-222	ENST00000543627	NSUN4	Q96CB9	384 aa	Known RBP	13.48	□□□□□ -0.25
DDB1-222	ENST00000543627	SLC10A4	Q96EP9	437 aa		13.48	□□□□□ -0.25
DDB1-222	ENST00000543627	ZIC5	Q96T25	663 aa		13.48	□□□□□ -0.25
DDB1-222	ENST00000543627	BOLA2	Q9H3K6	86 aa		13.48	□□□□□ -0.25
DDB1-222	ENST00000543627	PIH1D3	Q9NQM4	214 aa	Known RBP	13.48	□□□□□ -0.25
DDB1-222	ENST00000543627	MROH7-TTC4	A0A0A0MT08	1334 aa		13.47	□□□□□ -0.25
DDB1-222	ENST00000543627	PDS5A	Q29RF7	1337 aa	Known RBP	13.47	□□□□□ -0.25
DDB1-222	ENST00000543627	USP2	O75604	605 aa	Predicted RBP	13.47	□□□□□ -0.25
DDB1-222	ENST00000543627	IREB2	P48200	963 aa	Known RBP	13.47	□□□□□ -0.25
DDB1-222	ENST00000543627	KIF23	Q02241	960 aa	Predicted RBP	13.47	□□□□□ -0.25
DDB1-222	ENST00000543627	MAP2K1	Q02750	393 aa	Predicted RBP	13.47	□□□□□ -0.25
DDB1-222	ENST00000543627	NFIA	Q12857	509 aa		13.47	□□□□□ -0.25
DDB1-222	ENST00000543627	HHIPL1	Q96JK4	782 aa		13.47	□□□□□ -0.25
DDB1-222	ENST00000543627	ANTXR1	Q9H6X2	564 aa		13.47	□□□□□ -0.25
DDB1-222	ENST00000543627	DCTPP1	Q9H773	170 aa		13.47	□□□□□ -0.25
DDB1-222	ENST00000543627	AATF	Q9NY61	560 aa	Known RBP eCLIP	13.47	□□□□□ -0.25
DDB1-222	ENST00000543627	TSKS	Q9UJT2	592 aa		13.47	□□□□□ -0.25
DDB1-222	ENST00000543627	GOLIM4	O00461	696 aa		13.46	□□□□□ -0.25
DDB1-222	ENST00000543627	CYP7A1	P22680	504 aa		13.46	□□□□□ -0.25
DDB1-222	ENST00000543627	MAP2K2	P36507	400 aa		13.46	□□□□□ -0.25
DDB1-222	ENST00000543627	RGS3	P49796	1198 aa		13.46	□□□□□ -0.25
DDB1-222	ENST00000543627	NOG	Q13253	232 aa		13.46	□□□□□ -0.25
DDB1-222	ENST00000543627	ZFPM1	Q8IX07	1006 aa		13.46	□□□□□ -0.25
DDB1-222	ENST00000543627	MAGEB6	Q8N7X4	407 aa		13.46	□□□□□ -0.25
DDB1-222	ENST00000543627	CLMN	Q96JQ2	1002 aa		13.46	□□□□□ -0.25
DDB1-222	ENST00000543627	ZNF512B	Q96KM6	892 aa	Predicted RBP	13.46	□□□□□ -0.25
DDB1-222	ENST00000543627	MYH2	Q9UKX2	1941 aa		13.45	□□□□□ -0.26
DDB1-222	ENST00000543627	FOXN1	O15353	648 aa		13.45	□□□□□ -0.26
DDB1-222	ENST00000543627	BAG3	O95817	575 aa		13.45	□□□□□ -0.26
DDB1-222	ENST00000543627	SLC10A3	P09131	477 aa		13.45	□□□□□ -0.26
DDB1-222	ENST00000543627	ANKRD45	Q5TZF3	282 aa		13.45	□□□□□ -0.26
DDB1-222	ENST00000543627	FAM83A	Q86UY5	434 aa		13.45	□□□□□ -0.26
DDB1-222	ENST00000543627	RASAL3	Q86YV0	1011 aa		13.45	□□□□□ -0.26
DDB1-222	ENST00000543627	TEX11	Q8IYF3	940 aa		13.45	□□□□□ -0.26
DDB1-222	ENST00000543627	ZNF384	Q8TF68	577 aa		13.45	□□□□□ -0.26
DDB1-222	ENST00000543627	FAM151A	Q8WW52	585 aa		13.45	□□□□□ -0.26
DDB1-222	ENST00000543627	EDC3	Q96F86	508 aa	Known RBP	13.45	□□□□□ -0.26
DDB1-222	ENST00000543627	TEPSIN	Q96N21	525 aa		13.45	□□□□□ -0.26
DDB1-222	ENST00000543627	ELP3	Q9H9T3	547 aa		13.45	□□□□□ -0.26
DDB1-222	ENST00000543627	ECM29	Q5VYK3	1845 aa		13.45	□□□□□ -0.26
DDB1-222	ENST00000543627	AK9	Q5TCS8	1911 aa		13.45	□□□□□ -0.26
DDB1-222	ENST00000543627	GAK	O14976	1311 aa		13.44	□□□□□ -0.26
DDB1-222	ENST00000543627	GPR75-ASB3	A0A0A6YYF3	556 aa		13.44	□□□□□ -0.26
DDB1-222	ENST00000543627	FAM155A	B1AL88	458 aa	Predicted RBP	13.44	□□□□□ -0.26
DDB1-222	ENST00000543627	MAP3K12	Q12852	859 aa		13.44	□□□□□ -0.26
DDB1-222	ENST00000543627	TSHZ3	Q63HK5	1081 aa		13.44	□□□□□ -0.26
DDB1-222	ENST00000543627	B4GALNT3	Q6L9W6	998 aa		13.44	□□□□□ -0.26
DDB1-222	ENST00000543627	MIGA1	Q8NAN2	632 aa		13.44	□□□□□ -0.26
DDB1-222	ENST00000543627	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	13.44	□□□□□ -0.26
DDB1-222	ENST00000543627	FAM163A	Q96GL9	167 aa	Predicted RBP	13.44	□□□□□ -0.26
DDB1-222	ENST00000543627	WBP1L	Q9NX94	342 aa		13.44	□□□□□ -0.26
DDB1-222	ENST00000543627	FAM198A	Q9UFP1	575 aa		13.44	□□□□□ -0.26
DDB1-222	ENST00000543627	PAPPA2	Q9BXP8	1791 aa		13.43	□□□□□ -0.26
DDB1-222	ENST00000543627	DYNLL1	P63167	89 aa	Known RBP	13.43	□□□□□ -0.26
DDB1-222	ENST00000543627	MAP3K9	P80192	1104 aa		13.43	□□□□□ -0.26
DDB1-222	ENST00000543627	TTF1	Q15361	905 aa	Predicted RBP	13.43	□□□□□ -0.26
DDB1-222	ENST00000543627	FKBP1C	Q5VVH2	108 aa		13.43	□□□□□ -0.26
DDB1-222	ENST00000543627	DCAF15	Q66K64	600 aa		13.43	□□□□□ -0.26
DDB1-222	ENST00000543627	ANKRD13A	Q8IZ07	590 aa		13.43	□□□□□ -0.26
DDB1-222	ENST00000543627	HOOK2	Q96ED9	719 aa		13.43	□□□□□ -0.26
DDB1-222	ENST00000543627	GPATCH3	Q96I76	525 aa		13.43	□□□□□ -0.26
DDB1-222	ENST00000543627	WRNIP1	Q96S55	665 aa		13.43	□□□□□ -0.26
DDB1-222	ENST00000543627	DDX4	Q9NQI0	724 aa	Known RBP	13.43	□□□□□ -0.26
DDB1-222	ENST00000543627	CSAD	Q9Y600	493 aa		13.43	□□□□□ -0.26
DDB1-222	ENST00000543627	ZBTB22	O15209	634 aa		13.42	□□□□□ -0.26
DDB1-222	ENST00000543627	MAP4K4	O95819	1239 aa	Predicted RBP	13.42	□□□□□ -0.26
DDB1-222	ENST00000543627	CTCF	P49711	727 aa	Predicted RBP	13.42	□□□□□ -0.26
DDB1-222	ENST00000543627	LBX1	P52954	281 aa		13.42	□□□□□ -0.26
DDB1-222	ENST00000543627	SLC4A8	Q2Y0W8	1093 aa		13.42	□□□□□ -0.26
DDB1-222	ENST00000543627	LDLRAD1	Q5T700	205 aa		13.42	□□□□□ -0.26
DDB1-222	ENST00000543627	SLC9C2	Q5TAH2	1124 aa		13.42	□□□□□ -0.26
DDB1-222	ENST00000543627	ADGRA1	Q86SQ6	560 aa		13.42	□□□□□ -0.26
DDB1-222	ENST00000543627	MAPKAPK5	Q8IW41	473 aa		13.42	□□□□□ -0.26
DDB1-222	ENST00000543627	TGFBRAP1	Q8WUH2	860 aa		13.42	□□□□□ -0.26
DDB1-222	ENST00000543627	ZKSCAN4	Q969J2	545 aa	Predicted RBP	13.42	□□□□□ -0.26
DDB1-222	ENST00000543627	CSRNP1	Q96S65	589 aa		13.42	□□□□□ -0.26
DDB1-222	ENST00000543627	ZNF341	Q9BYN7	854 aa		13.42	□□□□□ -0.26
DDB1-222	ENST00000543627	RWDD1	Q9H446	243 aa	Predicted RBP	13.42	□□□□□ -0.26
DDB1-222	ENST00000543627	PAG1	Q9NWQ8	432 aa		13.42	□□□□□ -0.26
DDB1-222	ENST00000543627	SSC5D	A1L4H1	1573 aa		13.41	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 126.8 ms