RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 MAGEA10P43363 369 aaPredicted RBP6.2□□□□□ -1.42
LIMS1-214ENST00000542845 KCNJ4P48050 445 aa6.2□□□□□ -1.42
LIMS1-214ENST00000542845 MAP3K9P80192 1104 aa6.2□□□□□ -1.42
LIMS1-214ENST00000542845 PRKCZQ05513 592 aa6.2□□□□□ -1.42
LIMS1-214ENST00000542845 VGLL4Q14135 290 aa6.2□□□□□ -1.42
LIMS1-214ENST00000542845 MFSD10Q14728 455 aa6.2□□□□□ -1.42
LIMS1-214ENST00000542845 KRT24Q2M2I5 525 aa6.2□□□□□ -1.42
LIMS1-214ENST00000542845 LRIT3Q3SXY7 679 aa6.2□□□□□ -1.42
LIMS1-214ENST00000542845 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.2□□□□□ -1.42
LIMS1-214ENST00000542845 RIC3Q7Z5B4 369 aa6.2□□□□□ -1.42
LIMS1-214ENST00000542845 NECAB2Q7Z6G3 386 aa6.2□□□□□ -1.42
LIMS1-214ENST00000542845 DIS3LQ8TF46 1054 aaKnown RBP6.2□□□□□ -1.42
LIMS1-214ENST00000542845 MARVELD3Q96A59 401 aa6.2□□□□□ -1.42
LIMS1-214ENST00000542845 ZBED3Q96IU2 234 aaPredicted RBP6.2□□□□□ -1.42
LIMS1-214ENST00000542845 GUCD1Q96NT3 240 aa6.2□□□□□ -1.42
LIMS1-214ENST00000542845 MYD88Q99836 296 aa6.2□□□□□ -1.42
LIMS1-214ENST00000542845 CRISPLD2Q9H0B8 497 aa6.2□□□□□ -1.42
LIMS1-214ENST00000542845 GABRQQ9UN88 632 aa6.2□□□□□ -1.42
LIMS1-214ENST00000542845 COL1A1P02452 1464 aaPredicted RBP6.2□□□□□ -1.42
LIMS1-214ENST00000542845 ZNF804BA4D1E1 1349 aa6.2□□□□□ -1.42
LIMS1-214ENST00000542845 MED23Q9ULK4 1368 aa6.19□□□□□ -1.42
LIMS1-214ENST00000542845 UNC80Q8N2C7 3258 aa6.19□□□□□ -1.42
LIMS1-214ENST00000542845 TMEM265A0A087WTH1 108 aa6.19□□□□□ -1.42
LIMS1-214ENST00000542845 HSP90B1P14625 803 aaKnown RBP6.19□□□□□ -1.42
LIMS1-214ENST00000542845 KLRK1P26718 216 aa6.19□□□□□ -1.42
LIMS1-214ENST00000542845 MMP14P50281 582 aa6.19□□□□□ -1.42
LIMS1-214ENST00000542845 NFE2L2Q16236 605 aa6.19□□□□□ -1.42
LIMS1-214ENST00000542845 C17orf99Q6UX52 265 aa6.19□□□□□ -1.42
LIMS1-214ENST00000542845 CERS5Q8N5B7 392 aa6.19□□□□□ -1.42
LIMS1-214ENST00000542845 ZBTB38Q8NAP3 1195 aaPredicted RBP6.19□□□□□ -1.42
LIMS1-214ENST00000542845 HELBQ8NG08 1087 aaPredicted RBP6.19□□□□□ -1.42
LIMS1-214ENST00000542845 ZKSCAN4Q969J2 545 aaPredicted RBP6.19□□□□□ -1.42
LIMS1-214ENST00000542845 CDC5LQ99459 802 aaKnown RBP6.19□□□□□ -1.42
LIMS1-214ENST00000542845 TDRD3Q9H7E2 651 aaKnown RBP6.19□□□□□ -1.42
LIMS1-214ENST00000542845 AOX1Q06278 1338 aa6.19□□□□□ -1.42
LIMS1-214ENST00000542845 RANBP2P49792 3224 aaKnown RBP6.19□□□□□ -1.42
LIMS1-214ENST00000542845 MGAMO43451 1857 aa6.18□□□□□ -1.42
LIMS1-214ENST00000542845 PDHXO00330 501 aa6.18□□□□□ -1.42
LIMS1-214ENST00000542845 IRF6O14896 467 aa6.18□□□□□ -1.42
LIMS1-214ENST00000542845 INHAP05111 366 aa6.18□□□□□ -1.42
LIMS1-214ENST00000542845 FCGRTP55899 365 aa6.18□□□□□ -1.42
LIMS1-214ENST00000542845 MDM2Q00987 491 aaPredicted RBP6.18□□□□□ -1.42
LIMS1-214ENST00000542845 SNAPC2Q13487 334 aa6.18□□□□□ -1.42
LIMS1-214ENST00000542845 PPP1R15BQ5SWA1 713 aa6.18□□□□□ -1.42
LIMS1-214ENST00000542845 HDGFL1Q5TGJ6 251 aa6.18□□□□□ -1.42
LIMS1-214ENST00000542845 MAFAQ8NHW3 353 aaPredicted RBP6.18□□□□□ -1.42
LIMS1-214ENST00000542845 SYMPKQ92797 1274 aaKnown RBP6.18□□□□□ -1.42
LIMS1-214ENST00000542845 TMEM39BQ9GZU3 492 aa6.18□□□□□ -1.42
LIMS1-214ENST00000542845 ZNF70Q9UC06 446 aaPredicted RBP6.18□□□□□ -1.42
LIMS1-214ENST00000542845 MAPK8IP3Q9UPT6 1336 aa6.18□□□□□ -1.42
LIMS1-214ENST00000542845 SNAP23O00161 211 aa6.17□□□□□ -1.42
LIMS1-214ENST00000542845 TNFRSF10AO00220 468 aa6.17□□□□□ -1.42
LIMS1-214ENST00000542845 PPP2R1AP30153 589 aa6.17□□□□□ -1.42
LIMS1-214ENST00000542845 IGHMBP2P38935 993 aaKnown RBP6.17□□□□□ -1.42
LIMS1-214ENST00000542845 PLA2G5P39877 138 aa6.17□□□□□ -1.42
LIMS1-214ENST00000542845 MLLT3P42568 568 aaPredicted RBP6.17□□□□□ -1.42
LIMS1-214ENST00000542845 TNNI2P48788 182 aa6.17□□□□□ -1.42
LIMS1-214ENST00000542845 FLT3LGP49771 235 aa6.17□□□□□ -1.42
LIMS1-214ENST00000542845 RIPK4P57078 832 aa6.17□□□□□ -1.42
LIMS1-214ENST00000542845 TNFAIP1Q13829 316 aa6.17□□□□□ -1.42
LIMS1-214ENST00000542845 ZNF697Q5TEC3 545 aa6.17□□□□□ -1.42
LIMS1-214ENST00000542845 ERO1BQ86YB8 467 aa6.17□□□□□ -1.42
LIMS1-214ENST00000542845 GOLGA6L2Q8N9W4 650 aaPredicted RBP6.17□□□□□ -1.42
LIMS1-214ENST00000542845 MTMR14Q8NCE2 650 aa6.17□□□□□ -1.42
LIMS1-214ENST00000542845 MYLIPQ8WY64 445 aa6.17□□□□□ -1.42
LIMS1-214ENST00000542845 WRNIP1Q96S55 665 aa6.17□□□□□ -1.42
LIMS1-214ENST00000542845 CDX2Q99626 313 aaPredicted RBP6.17□□□□□ -1.42
LIMS1-214ENST00000542845 CD209Q9NNX6 404 aa6.17□□□□□ -1.42
LIMS1-214ENST00000542845 BSDC1Q9NW68 430 aaPredicted RBP6.17□□□□□ -1.42
LIMS1-214ENST00000542845 DAXXQ9UER7 740 aaPredicted RBP6.17□□□□□ -1.42
LIMS1-214ENST00000542845 LEMD3Q9Y2U8 911 aa6.17□□□□□ -1.42
LIMS1-214ENST00000542845 SPDYE5A6NIY4 337 aa6.16□□□□□ -1.42
LIMS1-214ENST00000542845 DPYSL4O14531 572 aa6.16□□□□□ -1.42
LIMS1-214ENST00000542845 PLIN1O60240 522 aa6.16□□□□□ -1.42
LIMS1-214ENST00000542845 TAF5LO75529 589 aa6.16□□□□□ -1.42
LIMS1-214ENST00000542845 PCCAP05165 728 aaPredicted RBP6.16□□□□□ -1.42
LIMS1-214ENST00000542845 CYP2C8P10632 490 aa6.16□□□□□ -1.42
LIMS1-214ENST00000542845 PLCG2P16885 1265 aa6.16□□□□□ -1.42
LIMS1-214ENST00000542845 CACNB3P54284 484 aa6.16□□□□□ -1.42
LIMS1-214ENST00000542845 CTSWP56202 376 aa6.16□□□□□ -1.42
LIMS1-214ENST00000542845 TRIM28Q13263 835 aaKnown RBP6.16□□□□□ -1.42
LIMS1-214ENST00000542845 DDX55Q8NHQ9 600 aaKnown RBP eCLIP6.16□□□□□ -1.42
LIMS1-214ENST00000542845 MPHOSPH8Q99549 860 aa6.16□□□□□ -1.42
LIMS1-214ENST00000542845 PCGF6Q9BYE7 350 aa6.16□□□□□ -1.42
LIMS1-214ENST00000542845 NBPF3Q9H094 633 aa6.16□□□□□ -1.42
LIMS1-214ENST00000542845 C11orf49Q9H6J7 331 aa6.16□□□□□ -1.42
LIMS1-214ENST00000542845 GREM2Q9H772 168 aa6.16□□□□□ -1.42
LIMS1-214ENST00000542845 PHAXQ9H814 394 aaKnown RBP6.16□□□□□ -1.42
LIMS1-214ENST00000542845 HYPKQ9NX55 129 aa6.16□□□□□ -1.42
LIMS1-214ENST00000542845 CWC25Q9NXE8 425 aaPredicted RBP6.16□□□□□ -1.42
LIMS1-214ENST00000542845 DBF4Q9UBU7 674 aaPredicted RBP6.16□□□□□ -1.42
LIMS1-214ENST00000542845 SNCAIPQ9Y6H5 919 aa6.16□□□□□ -1.42
LIMS1-214ENST00000542845 AK9Q5TCS8 1911 aa6.15□□□□□ -1.42
LIMS1-214ENST00000542845 TNPO2O14787 897 aaKnown RBP6.15□□□□□ -1.42
LIMS1-214ENST00000542845 TRIM26Q12899 539 aaPredicted RBP6.15□□□□□ -1.42
LIMS1-214ENST00000542845 PPIL2Q13356 520 aa6.15□□□□□ -1.42
LIMS1-214ENST00000542845 MIGA2Q7L4E1 593 aa6.15□□□□□ -1.42
LIMS1-214ENST00000542845 ANKRD23Q86SG2 305 aa6.15□□□□□ -1.42
LIMS1-214ENST00000542845 CCDC191Q8NCU4 936 aa6.15□□□□□ -1.42
LIMS1-214ENST00000542845 IL27Q8NEV9 243 aa6.15□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms