RNA–Protein interactions for RNA: ENST00000540663.5

SYNE1-238, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 776 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-238ENST00000540663 TTC39AQ5SRH9 613 aa14.51□□□□□ -0.09
SYNE1-238ENST00000540663 ERICH6Q7L0X2 663 aa14.51□□□□□ -0.09
SYNE1-238ENST00000540663 SLC10A4Q96EP9 437 aa14.51□□□□□ -0.09
SYNE1-238ENST00000540663 ZNF512BQ96KM6 892 aaPredicted RBP14.51□□□□□ -0.09
SYNE1-238ENST00000540663 USP2O75604 605 aaPredicted RBP14.5□□□□□ -0.09
SYNE1-238ENST00000540663 MCAMP43121 646 aa14.5□□□□□ -0.09
SYNE1-238ENST00000540663 CACNB3P54284 484 aa14.5□□□□□ -0.09
SYNE1-238ENST00000540663 CDC42EP5Q6NZY7 148 aa14.5□□□□□ -0.09
SYNE1-238ENST00000540663 ANKRD13AQ8IZ07 590 aa14.5□□□□□ -0.09
SYNE1-238ENST00000540663 FAM151AQ8WW52 585 aa14.5□□□□□ -0.09
SYNE1-238ENST00000540663 CSRNP1Q96S65 589 aa14.5□□□□□ -0.09
SYNE1-238ENST00000540663 DBNDD2Q9BQY9 259 aa14.5□□□□□ -0.09
SYNE1-238ENST00000540663 MROH7-TTC4A0A0A0MT08 1334 aa14.49□□□□□ -0.09
SYNE1-238ENST00000540663 MAP4K4O95819 1239 aaPredicted RBP14.49□□□□□ -0.09
SYNE1-238ENST00000540663 LDHCP07864 332 aa14.49□□□□□ -0.09
SYNE1-238ENST00000540663 ZBTB48P10074 688 aaPredicted RBP14.49□□□□□ -0.09
SYNE1-238ENST00000540663 SREBF2Q12772 1141 aa14.49□□□□□ -0.09
SYNE1-238ENST00000540663 C20orf194Q5TEA3 1177 aa14.49□□□□□ -0.09
SYNE1-238ENST00000540663 IFFO2Q5TF58 517 aa14.49□□□□□ -0.09
SYNE1-238ENST00000540663 SPRYD7Q5W111 196 aa14.49□□□□□ -0.09
SYNE1-238ENST00000540663 TNS4Q8IZW8 715 aa14.49□□□□□ -0.09
SYNE1-238ENST00000540663 USP40Q9NVE5 1235 aa14.49□□□□□ -0.09
SYNE1-238ENST00000540663 EXOC6BQ9Y2D4 811 aa14.49□□□□□ -0.09
SYNE1-238ENST00000540663 MYH2Q9UKX2 1941 aa14.49□□□□□ -0.09
SYNE1-238ENST00000540663 RAB11FIP3O75154 756 aa14.48□□□□□ -0.09
SYNE1-238ENST00000540663 TM4SF4P48230 202 aa14.48□□□□□ -0.09
SYNE1-238ENST00000540663 INHBEP58166 350 aa14.48□□□□□ -0.09
SYNE1-238ENST00000540663 MECOMQ03112 1051 aa14.48□□□□□ -0.09
SYNE1-238ENST00000540663 DCAF15Q66K64 600 aa14.48□□□□□ -0.09
SYNE1-238ENST00000540663 PI16Q6UXB8 463 aa14.48□□□□□ -0.09
SYNE1-238ENST00000540663 EAF2Q96CJ1 260 aaPredicted RBP14.48□□□□□ -0.09
SYNE1-238ENST00000540663 KIF1BPQ96EK5 621 aa14.48□□□□□ -0.09
SYNE1-238ENST00000540663 IDI2Q9BXS1 227 aa14.48□□□□□ -0.09
SYNE1-238ENST00000540663 DBNLQ9UJU6 430 aaKnown RBP14.48□□□□□ -0.09
SYNE1-238ENST00000540663 AKAP11Q9UKA4 1901 aa14.47□□□□□ -0.09
SYNE1-238ENST00000540663 MANSC4A6NHS7 340 aaPredicted RBP14.47□□□□□ -0.09
SYNE1-238ENST00000540663 CDAN1Q8IWY9 1227 aa14.47□□□□□ -0.09
SYNE1-238ENST00000540663 SIRT2Q8IXJ6 389 aa14.47□□□□□ -0.09
SYNE1-238ENST00000540663 RHPN1Q8TCX5 695 aa14.47□□□□□ -0.09
SYNE1-238ENST00000540663 NSUN4Q96CB9 384 aaKnown RBP14.47□□□□□ -0.09
SYNE1-238ENST00000540663 WNK4Q96J92 1243 aa14.47□□□□□ -0.09
SYNE1-238ENST00000540663 CLMNQ96JQ2 1002 aa14.47□□□□□ -0.09
SYNE1-238ENST00000540663 RNF186Q9NXI6 227 aa14.47□□□□□ -0.09
SYNE1-238ENST00000540663 RAI14Q9P0K7 980 aa14.47□□□□□ -0.09
SYNE1-238ENST00000540663 LRP2BPQ9P2M1 347 aa14.47□□□□□ -0.09
SYNE1-238ENST00000540663 FZD1Q9UP38 647 aa14.47□□□□□ -0.09
SYNE1-238ENST00000540663 CSADQ9Y600 493 aa14.47□□□□□ -0.09
SYNE1-238ENST00000540663 RFX7Q2KHR2 1363 aa14.47□□□□□ -0.09
SYNE1-238ENST00000540663 GPR75-ASB3A0A0A6YYF3 556 aa14.46□□□□□ -0.09
SYNE1-238ENST00000540663 ENTPD3O75355 529 aa14.46□□□□□ -0.09
SYNE1-238ENST00000540663 TRPA1O75762 1119 aa14.46□□□□□ -0.09
SYNE1-238ENST00000540663 BTDP43251 543 aa14.46□□□□□ -0.09
SYNE1-238ENST00000540663 MAP3K9P80192 1104 aa14.46□□□□□ -0.09
SYNE1-238ENST00000540663 TBC1D9Q6ZT07 1266 aa14.46□□□□□ -0.09
SYNE1-238ENST00000540663 AACSQ86V21 672 aa14.46□□□□□ -0.09
SYNE1-238ENST00000540663 CLASRPQ8N2M8 674 aaKnown RBP14.46□□□□□ -0.09
SYNE1-238ENST00000540663 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.46□□□□□ -0.09
SYNE1-238ENST00000540663 CCDC8Q9H0W5 538 aaPredicted RBP14.46□□□□□ -0.09
SYNE1-238ENST00000540663 FAM198AQ9UFP1 575 aa14.46□□□□□ -0.09
SYNE1-238ENST00000540663 OTOFQ9HC10 1997 aa14.45□□□□□ -0.1
SYNE1-238ENST00000540663 LAMB1P07942 1786 aa14.45□□□□□ -0.1
SYNE1-238ENST00000540663 MAST2Q6P0Q8 1798 aa14.45□□□□□ -0.1
SYNE1-238ENST00000540663 NPM3O75607 178 aaKnown RBP14.45□□□□□ -0.1
SYNE1-238ENST00000540663 NFIAQ12857 509 aa14.45□□□□□ -0.1
SYNE1-238ENST00000540663 TMED8Q6PL24 325 aaPredicted RBP14.45□□□□□ -0.1
SYNE1-238ENST00000540663 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.45□□□□□ -0.1
SYNE1-238ENST00000540663 ZNF384Q8TF68 577 aa14.45□□□□□ -0.1
SYNE1-238ENST00000540663 ZNF341Q9BYN7 854 aa14.45□□□□□ -0.1
SYNE1-238ENST00000540663 SNRKQ9NRH2 765 aa14.45□□□□□ -0.1
SYNE1-238ENST00000540663 TLR7Q9NYK1 1049 aaKnown RBP14.45□□□□□ -0.1
SYNE1-238ENST00000540663 TSKSQ9UJT2 592 aa14.45□□□□□ -0.1
SYNE1-238ENST00000540663 WDHD1O75717 1129 aaPredicted RBP14.44□□□□□ -0.1
SYNE1-238ENST00000540663 ALDH1A1P00352 501 aa14.44□□□□□ -0.1
SYNE1-238ENST00000540663 CYP2E1P05181 493 aaPredicted RBP14.44□□□□□ -0.1
SYNE1-238ENST00000540663 ZAP70P43403 619 aa14.44□□□□□ -0.1
SYNE1-238ENST00000540663 RGS3P49796 1198 aa14.44□□□□□ -0.1
SYNE1-238ENST00000540663 RRP1P56182 461 aaKnown RBP14.44□□□□□ -0.1
SYNE1-238ENST00000540663 TCP10Q12799 353 aa14.44□□□□□ -0.1
SYNE1-238ENST00000540663 MKRN3Q13064 507 aaKnown RBP14.44□□□□□ -0.1
SYNE1-238ENST00000540663 VGLL4Q14135 290 aa14.44□□□□□ -0.1
SYNE1-238ENST00000540663 WRNIP1Q96S55 665 aa14.44□□□□□ -0.1
SYNE1-238ENST00000540663 NOL10Q9BSC4 688 aaKnown RBP14.44□□□□□ -0.1
SYNE1-238ENST00000540663 IFIT2P09913 472 aaKnown RBP14.43□□□□□ -0.1
SYNE1-238ENST00000540663 PLCG2P16885 1265 aa14.43□□□□□ -0.1
SYNE1-238ENST00000540663 RHBDL3P58872 404 aa14.43□□□□□ -0.1
SYNE1-238ENST00000540663 NOM1Q5C9Z4 860 aaKnown RBP14.43□□□□□ -0.1
SYNE1-238ENST00000540663 NAA16Q6N069 864 aaPredicted RBP14.43□□□□□ -0.1
SYNE1-238ENST00000540663 OPTNQ96CV9 577 aa14.43□□□□□ -0.1
SYNE1-238ENST00000540663 YTHDC1Q96MU7 727 aaKnown RBP14.43□□□□□ -0.1
SYNE1-238ENST00000540663 CFHR5Q9BXR6 569 aa14.43□□□□□ -0.1
SYNE1-238ENST00000540663 ELP3Q9H9T3 547 aa14.43□□□□□ -0.1
SYNE1-238ENST00000540663 IL1RAPL2Q9NP60 686 aa14.43□□□□□ -0.1
SYNE1-238ENST00000540663 COL2A1P02458 1487 aaPredicted RBP14.43□□□□□ -0.1
SYNE1-238ENST00000540663 BAG3O95817 575 aa14.42□□□□□ -0.1
SYNE1-238ENST00000540663 GJA5P36382 358 aa14.42□□□□□ -0.1
SYNE1-238ENST00000540663 OTUD7BQ6GQQ9 843 aa14.42□□□□□ -0.1
SYNE1-238ENST00000540663 ERO1BQ86YB8 467 aa14.42□□□□□ -0.1
SYNE1-238ENST00000540663 CERS3Q8IU89 383 aa14.42□□□□□ -0.1
SYNE1-238ENST00000540663 ZNF112Q9UJU3 913 aa14.42□□□□□ -0.1
SYNE1-238ENST00000540663 TESPA1A2RU30 521 aaPredicted RBP14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms