RNA–Protein interactions for RNA: ENST00000540230.5

UBE3B-212, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best) BASIC

Gene UBE3B, Length 1,541 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-212ENST00000540230 LDLRAD1Q5T700 205 aa18.49■□□□□ 0.55
UBE3B-212ENST00000540230 ERICH6Q7L0X2 663 aa18.49■□□□□ 0.55
UBE3B-212ENST00000540230 ARMC9Q7Z3E5 817 aa18.49■□□□□ 0.55
UBE3B-212ENST00000540230 CCDC102AQ96A19 550 aa18.49■□□□□ 0.55
UBE3B-212ENST00000540230 USP2O75604 605 aaPredicted RBP18.49■□□□□ 0.55
UBE3B-212ENST00000540230 CYP2E1P05181 493 aaPredicted RBP18.49■□□□□ 0.55
UBE3B-212ENST00000540230 ZAP70P43403 619 aa18.49■□□□□ 0.55
UBE3B-212ENST00000540230 TNNI2P48788 182 aa18.49■□□□□ 0.55
UBE3B-212ENST00000540230 KIF23Q02241 960 aaPredicted RBP18.49■□□□□ 0.55
UBE3B-212ENST00000540230 MAP3K11Q16584 847 aa18.49■□□□□ 0.55
UBE3B-212ENST00000540230 SUPT20HL1Q3ZLR7 823 aa18.49■□□□□ 0.55
UBE3B-212ENST00000540230 ZNF512BQ96KM6 892 aaPredicted RBP18.49■□□□□ 0.55
UBE3B-212ENST00000540230 TMOD2Q9NZR1 351 aa18.49■□□□□ 0.55
UBE3B-212ENST00000540230 NDUFB9Q9Y6M9 179 aa18.49■□□□□ 0.55
UBE3B-212ENST00000540230 MAST2Q6P0Q8 1798 aa18.48■□□□□ 0.55
UBE3B-212ENST00000540230 SPTY2D1Q68D10 685 aaPredicted RBP18.48■□□□□ 0.55
UBE3B-212ENST00000540230 AIDAQ96BJ3 306 aa18.48■□□□□ 0.55
UBE3B-212ENST00000540230 NSUN4Q96CB9 384 aaKnown RBP18.48■□□□□ 0.55
UBE3B-212ENST00000540230 KIF1BPQ96EK5 621 aa18.48■□□□□ 0.55
UBE3B-212ENST00000540230 CLMNQ96JQ2 1002 aa18.48■□□□□ 0.55
UBE3B-212ENST00000540230 BCL11AQ9H165 835 aa18.48■□□□□ 0.55
UBE3B-212ENST00000540230 USP40Q9NVE5 1235 aa18.48■□□□□ 0.55
UBE3B-212ENST00000540230 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.48■□□□□ 0.55
UBE3B-212ENST00000540230 MROH7-TTC4A0A0A0MT08 1334 aa18.47■□□□□ 0.55
UBE3B-212ENST00000540230 COL13A1Q5TAT6 717 aaPredicted RBP18.47■□□□□ 0.55
UBE3B-212ENST00000540230 FKBP1CQ5VVH2 108 aa18.47■□□□□ 0.55
UBE3B-212ENST00000540230 FAM83AQ86UY5 434 aa18.47■□□□□ 0.55
UBE3B-212ENST00000540230 FAM163AQ96GL9 167 aaPredicted RBP18.47■□□□□ 0.55
UBE3B-212ENST00000540230 CRBNQ96SW2 442 aa18.47■□□□□ 0.55
UBE3B-212ENST00000540230 RAI14Q9P0K7 980 aa18.47■□□□□ 0.55
UBE3B-212ENST00000540230 FAM198AQ9UFP1 575 aa18.47■□□□□ 0.55
UBE3B-212ENST00000540230 TSKSQ9UJT2 592 aa18.47■□□□□ 0.55
UBE3B-212ENST00000540230 RFX7Q2KHR2 1363 aa18.47■□□□□ 0.55
UBE3B-212ENST00000540230 PPP1R12BO60237 982 aaPredicted RBP18.46■□□□□ 0.55
UBE3B-212ENST00000540230 HSPA8P11142 646 aaKnown RBP18.46■□□□□ 0.55
UBE3B-212ENST00000540230 BTDP43251 543 aa18.46■□□□□ 0.55
UBE3B-212ENST00000540230 TCP10Q12799 353 aa18.46■□□□□ 0.55
UBE3B-212ENST00000540230 MKRN3Q13064 507 aaKnown RBP18.46■□□□□ 0.55
UBE3B-212ENST00000540230 PIH1D3Q9NQM4 214 aaKnown RBP18.46■□□□□ 0.55
UBE3B-212ENST00000540230 PCDHB15Q9Y5E8 787 aa18.46■□□□□ 0.55
UBE3B-212ENST00000540230 RAB11FIP3O75154 756 aa18.45■□□□□ 0.54
UBE3B-212ENST00000540230 ZFPM1Q8IX07 1006 aa18.45■□□□□ 0.54
UBE3B-212ENST00000540230 CLASRPQ8N2M8 674 aaKnown RBP18.45■□□□□ 0.54
UBE3B-212ENST00000540230 CSRNP1Q96S65 589 aa18.45■□□□□ 0.54
UBE3B-212ENST00000540230 LRP2BPQ9P2M1 347 aa18.45■□□□□ 0.54
UBE3B-212ENST00000540230 RPAP1Q9BWH6 1393 aaPredicted RBP18.45■□□□□ 0.54
UBE3B-212ENST00000540230 CTCFP49711 727 aaPredicted RBP18.44■□□□□ 0.54
UBE3B-212ENST00000540230 LBX1P52954 281 aa18.44■□□□□ 0.54
UBE3B-212ENST00000540230 FAM151AQ8WW52 585 aa18.44■□□□□ 0.54
UBE3B-212ENST00000540230 ANTXR1Q9H6X2 564 aa18.44■□□□□ 0.54
UBE3B-212ENST00000540230 AK9Q5TCS8 1911 aa18.44■□□□□ 0.54
UBE3B-212ENST00000540230 DOCK2Q92608 1830 aa18.44■□□□□ 0.54
UBE3B-212ENST00000540230 GPR75-ASB3A0A0A6YYF3 556 aa18.44■□□□□ 0.54
UBE3B-212ENST00000540230 SMARCA5O60264 1052 aaPredicted RBP18.44■□□□□ 0.54
UBE3B-212ENST00000540230 WDHD1O75717 1129 aaPredicted RBP18.44■□□□□ 0.54
UBE3B-212ENST00000540230 RHBDL3P58872 404 aa18.44■□□□□ 0.54
UBE3B-212ENST00000540230 DDX4Q9NQI0 724 aaKnown RBP18.44■□□□□ 0.54
UBE3B-212ENST00000540230 IREB2P48200 963 aaKnown RBP18.43■□□□□ 0.54
UBE3B-212ENST00000540230 RGS3P49796 1198 aa18.43■□□□□ 0.54
UBE3B-212ENST00000540230 ADGRA1Q86SQ6 560 aa18.43■□□□□ 0.54
UBE3B-212ENST00000540230 SLF2Q8IX21 1173 aa18.43■□□□□ 0.54
UBE3B-212ENST00000540230 BEGAINQ9BUH8 593 aa18.43■□□□□ 0.54
UBE3B-212ENST00000540230 IDI2Q9BXS1 227 aa18.43■□□□□ 0.54
UBE3B-212ENST00000540230 GJA5P36382 358 aa18.42■□□□□ 0.54
UBE3B-212ENST00000540230 SPRYD7Q5W111 196 aa18.42■□□□□ 0.54
UBE3B-212ENST00000540230 PPP1R3FQ6ZSY5 799 aaPredicted RBP18.42■□□□□ 0.54
UBE3B-212ENST00000540230 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.42■□□□□ 0.54
UBE3B-212ENST00000540230 LAMB1P07942 1786 aa18.41■□□□□ 0.54
UBE3B-212ENST00000540230 IFIT2P09913 472 aaKnown RBP18.41■□□□□ 0.54
UBE3B-212ENST00000540230 SLURP2P0DP57 97 aa18.41■□□□□ 0.54
UBE3B-212ENST00000540230 PICALMQ13492 652 aa18.41■□□□□ 0.54
UBE3B-212ENST00000540230 MIGA2Q7L4E1 593 aa18.41■□□□□ 0.54
UBE3B-212ENST00000540230 SH3BP5LQ7L8J4 393 aa18.41■□□□□ 0.54
UBE3B-212ENST00000540230 ANKRD13AQ8IZ07 590 aa18.41■□□□□ 0.54
UBE3B-212ENST00000540230 SLC10A4Q96EP9 437 aa18.41■□□□□ 0.54
UBE3B-212ENST00000540230 LRRCC1Q9C099 1032 aa18.41■□□□□ 0.54
UBE3B-212ENST00000540230 DCTPP1Q9H773 170 aa18.41■□□□□ 0.54
UBE3B-212ENST00000540230 CDK5RAP2Q96SN8 1893 aa18.4■□□□□ 0.54
UBE3B-212ENST00000540230 LDHCP07864 332 aa18.4■□□□□ 0.54
UBE3B-212ENST00000540230 GSTO1P78417 241 aa18.4■□□□□ 0.54
UBE3B-212ENST00000540230 VGLL4Q14135 290 aa18.4■□□□□ 0.54
UBE3B-212ENST00000540230 NAA16Q6N069 864 aaPredicted RBP18.4■□□□□ 0.54
UBE3B-212ENST00000540230 CNKSR2Q8WXI2 1034 aa18.4■□□□□ 0.54
UBE3B-212ENST00000540230 WNK4Q96J92 1243 aa18.4■□□□□ 0.54
UBE3B-212ENST00000540230 ELP3Q9H9T3 547 aa18.4■□□□□ 0.54
UBE3B-212ENST00000540230 ATRNL1Q5VV63 1379 aa18.4■□□□□ 0.54
UBE3B-212ENST00000540230 IDH1O75874 414 aaKnown RBP18.39■□□□□ 0.54
UBE3B-212ENST00000540230 EDC3Q96F86 508 aaKnown RBP18.39■□□□□ 0.54
UBE3B-212ENST00000540230 RNF186Q9NXI6 227 aa18.39■□□□□ 0.54
UBE3B-212ENST00000540230 AATFQ9NY61 560 aaKnown RBP eCLIP18.39■□□□□ 0.54
UBE3B-212ENST00000540230 DDTLA6NHG4 134 aaPredicted RBP18.39■□□□□ 0.53
UBE3B-212ENST00000540230 ENTPD3O75355 529 aa18.39■□□□□ 0.53
UBE3B-212ENST00000540230 MAP3K9P80192 1104 aa18.39■□□□□ 0.53
UBE3B-212ENST00000540230 SH3RF3Q8TEJ3 882 aaPredicted RBP18.39■□□□□ 0.53
UBE3B-212ENST00000540230 WRNIP1Q96S55 665 aa18.39■□□□□ 0.53
UBE3B-212ENST00000540230 PRDM10Q9NQV6 1147 aa18.39■□□□□ 0.53
UBE3B-212ENST00000540230 UNCXA6NJT0 531 aa18.38■□□□□ 0.53
UBE3B-212ENST00000540230 TRPA1O75762 1119 aa18.38■□□□□ 0.53
UBE3B-212ENST00000540230 ZKSCAN4Q969J2 545 aaPredicted RBP18.38■□□□□ 0.53
UBE3B-212ENST00000540230 DNAJC2Q99543 621 aaKnown RBP18.38■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms