RNA–Protein interactions for RNA: ENST00000539080.1

CLIP1-211, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 4

Gene CLIP1, Length 560 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-211ENST00000539080 DZIP1Q86YF9 867 aaKnown RBP23.37■■□□□ 1.33
CLIP1-211ENST00000539080 FAM163AQ96GL9 167 aaPredicted RBP23.37■■□□□ 1.33
CLIP1-211ENST00000539080 RNF186Q9NXI6 227 aa23.37■■□□□ 1.33
CLIP1-211ENST00000539080 TSKSQ9UJT2 592 aa23.37■■□□□ 1.33
CLIP1-211ENST00000539080 COG6Q9Y2V7 657 aa23.37■■□□□ 1.33
CLIP1-211ENST00000539080 MYH2Q9UKX2 1941 aa23.37■■□□□ 1.33
CLIP1-211ENST00000539080 GAKO14976 1311 aa23.36■■□□□ 1.33
CLIP1-211ENST00000539080 TM4SF4P48230 202 aa23.36■■□□□ 1.33
CLIP1-211ENST00000539080 SREBF2Q12772 1141 aa23.36■■□□□ 1.33
CLIP1-211ENST00000539080 CCDC158Q5M9N0 1113 aa23.36■■□□□ 1.33
CLIP1-211ENST00000539080 ERC1Q8IUD2 1116 aa23.36■■□□□ 1.33
CLIP1-211ENST00000539080 RPAP2Q8IXW5 612 aaPredicted RBP23.36■■□□□ 1.33
CLIP1-211ENST00000539080 ZBTB40Q9NUA8 1239 aa23.36■■□□□ 1.33
CLIP1-211ENST00000539080 OTOFQ9HC10 1997 aa23.36■■□□□ 1.33
CLIP1-211ENST00000539080 HSP90AB4PQ58FF6 505 aa23.35■■□□□ 1.33
CLIP1-211ENST00000539080 CDC42EP5Q6NZY7 148 aa23.35■■□□□ 1.33
CLIP1-211ENST00000539080 ERICH6Q7L0X2 663 aa23.35■■□□□ 1.33
CLIP1-211ENST00000539080 FAM151AQ8WW52 585 aa23.35■■□□□ 1.33
CLIP1-211ENST00000539080 ZNF512BQ96KM6 892 aaPredicted RBP23.35■■□□□ 1.33
CLIP1-211ENST00000539080 TRPA1O75762 1119 aa23.34■■□□□ 1.33
CLIP1-211ENST00000539080 MCAMP43121 646 aa23.34■■□□□ 1.33
CLIP1-211ENST00000539080 CDAN1Q8IWY9 1227 aa23.34■■□□□ 1.33
CLIP1-211ENST00000539080 CLMNQ96JQ2 1002 aa23.34■■□□□ 1.33
CLIP1-211ENST00000539080 HMMRO75330 724 aa23.33■■□□□ 1.33
CLIP1-211ENST00000539080 INHBEP58166 350 aa23.33■■□□□ 1.33
CLIP1-211ENST00000539080 TTC39AQ5SRH9 613 aa23.33■■□□□ 1.33
CLIP1-211ENST00000539080 WNK4Q96J92 1243 aa23.33■■□□□ 1.33
CLIP1-211ENST00000539080 DBNDD2Q9BQY9 259 aa23.33■■□□□ 1.33
CLIP1-211ENST00000539080 USP40Q9NVE5 1235 aa23.33■■□□□ 1.33
CLIP1-211ENST00000539080 MANSC4A6NHS7 340 aaPredicted RBP23.32■■□□□ 1.32
CLIP1-211ENST00000539080 IGSF3O75054 1194 aa23.32■■□□□ 1.32
CLIP1-211ENST00000539080 GSTO1P78417 241 aa23.32■■□□□ 1.32
CLIP1-211ENST00000539080 MECOMQ03112 1051 aa23.32■■□□□ 1.32
CLIP1-211ENST00000539080 DCAF15Q66K64 600 aa23.32■■□□□ 1.32
CLIP1-211ENST00000539080 DDX55Q8NHQ9 600 aaKnown RBP eCLIP23.32■■□□□ 1.32
CLIP1-211ENST00000539080 MROH7-TTC4A0A0A0MT08 1334 aa23.32■■□□□ 1.32
CLIP1-211ENST00000539080 MAP3K9P80192 1104 aa23.31■■□□□ 1.32
CLIP1-211ENST00000539080 MKRN3Q13064 507 aaKnown RBP23.31■■□□□ 1.32
CLIP1-211ENST00000539080 PI16Q6UXB8 463 aa23.31■■□□□ 1.32
CLIP1-211ENST00000539080 IDI2Q9BXS1 227 aa23.31■■□□□ 1.32
CLIP1-211ENST00000539080 EXOC6BQ9Y2D4 811 aa23.31■■□□□ 1.32
CLIP1-211ENST00000539080 MAP4K4O95819 1239 aaPredicted RBP23.3■■□□□ 1.32
CLIP1-211ENST00000539080 LDHCP07864 332 aa23.3■■□□□ 1.32
CLIP1-211ENST00000539080 PPP1R3FQ6ZSY5 799 aaPredicted RBP23.3■■□□□ 1.32
CLIP1-211ENST00000539080 NSUN4Q96CB9 384 aaKnown RBP23.3■■□□□ 1.32
CLIP1-211ENST00000539080 EAF2Q96CJ1 260 aaPredicted RBP23.3■■□□□ 1.32
CLIP1-211ENST00000539080 DBNLQ9UJU6 430 aaKnown RBP23.3■■□□□ 1.32
CLIP1-211ENST00000539080 GPR75-ASB3A0A0A6YYF3 556 aa23.29■■□□□ 1.32
CLIP1-211ENST00000539080 ALDH1A1P00352 501 aa23.29■■□□□ 1.32
CLIP1-211ENST00000539080 NFIAQ12857 509 aa23.29■■□□□ 1.32
CLIP1-211ENST00000539080 CFHR5Q9BXR6 569 aa23.29■■□□□ 1.32
CLIP1-211ENST00000539080 FAM198AQ9UFP1 575 aa23.29■■□□□ 1.32
CLIP1-211ENST00000539080 CSADQ9Y600 493 aa23.29■■□□□ 1.32
CLIP1-211ENST00000539080 MAST2Q6P0Q8 1798 aa23.29■■□□□ 1.32
CLIP1-211ENST00000539080 RFX7Q2KHR2 1363 aa23.28■■□□□ 1.32
CLIP1-211ENST00000539080 ENTPD3O75355 529 aa23.28■■□□□ 1.32
CLIP1-211ENST00000539080 BTDP43251 543 aa23.28■■□□□ 1.32
CLIP1-211ENST00000539080 TCP10Q12799 353 aa23.28■■□□□ 1.32
CLIP1-211ENST00000539080 VGLL4Q14135 290 aa23.28■■□□□ 1.32
CLIP1-211ENST00000539080 TBC1D9Q6ZT07 1266 aa23.28■■□□□ 1.32
CLIP1-211ENST00000539080 ZNF384Q8TF68 577 aa23.28■■□□□ 1.32
CLIP1-211ENST00000539080 RAI14Q9P0K7 980 aa23.28■■□□□ 1.32
CLIP1-211ENST00000539080 LRP2BPQ9P2M1 347 aa23.28■■□□□ 1.32
CLIP1-211ENST00000539080 CASP8AP2Q9UKL3 1982 aa23.27■■□□□ 1.32
CLIP1-211ENST00000539080 NOM1Q5C9Z4 860 aaKnown RBP23.27■■□□□ 1.32
CLIP1-211ENST00000539080 C20orf194Q5TEA3 1177 aa23.27■■□□□ 1.32
CLIP1-211ENST00000539080 SIRT2Q8IXJ6 389 aa23.27■■□□□ 1.32
CLIP1-211ENST00000539080 RHPN1Q8TCX5 695 aa23.27■■□□□ 1.32
CLIP1-211ENST00000539080 OPTNQ96CV9 577 aa23.27■■□□□ 1.32
CLIP1-211ENST00000539080 ZNF341Q9BYN7 854 aa23.27■■□□□ 1.32
CLIP1-211ENST00000539080 CCDC8Q9H0W5 538 aaPredicted RBP23.27■■□□□ 1.32
CLIP1-211ENST00000539080 ELP3Q9H9T3 547 aa23.27■■□□□ 1.32
CLIP1-211ENST00000539080 NPM3O75607 178 aaKnown RBP23.26■■□□□ 1.31
CLIP1-211ENST00000539080 RGS3P49796 1198 aa23.26■■□□□ 1.31
CLIP1-211ENST00000539080 KIF1BPQ96EK5 621 aa23.26■■□□□ 1.31
CLIP1-211ENST00000539080 WRNIP1Q96S55 665 aa23.26■■□□□ 1.31
CLIP1-211ENST00000539080 TLR7Q9NYK1 1049 aaKnown RBP23.26■■□□□ 1.31
CLIP1-211ENST00000539080 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.26■■□□□ 1.31
CLIP1-211ENST00000539080 DOCK2Q92608 1830 aa23.26■■□□□ 1.31
CLIP1-211ENST00000539080 AK9Q5TCS8 1911 aa23.25■■□□□ 1.31
CLIP1-211ENST00000539080 RAB11FIP3O75154 756 aa23.25■■□□□ 1.31
CLIP1-211ENST00000539080 GJA5P36382 358 aa23.25■■□□□ 1.31
CLIP1-211ENST00000539080 AACSQ86V21 672 aa23.25■■□□□ 1.31
CLIP1-211ENST00000539080 IFNL1Q8IU54 200 aa23.25■■□□□ 1.31
CLIP1-211ENST00000539080 SNRKQ9NRH2 765 aa23.25■■□□□ 1.31
CLIP1-211ENST00000539080 TESPA1A2RU30 521 aaPredicted RBP23.24■■□□□ 1.31
CLIP1-211ENST00000539080 WDHD1O75717 1129 aaPredicted RBP23.24■■□□□ 1.31
CLIP1-211ENST00000539080 CYP2E1P05181 493 aaPredicted RBP23.24■■□□□ 1.31
CLIP1-211ENST00000539080 RHBDL3P58872 404 aa23.24■■□□□ 1.31
CLIP1-211ENST00000539080 CLASRPQ8N2M8 674 aaKnown RBP23.24■■□□□ 1.31
CLIP1-211ENST00000539080 ZNF112Q9UJU3 913 aa23.24■■□□□ 1.31
CLIP1-211ENST00000539080 SNCAIPQ9Y6H5 919 aa23.24■■□□□ 1.31
CLIP1-211ENST00000539080 SPDYE5A6NIY4 337 aa23.23■■□□□ 1.31
CLIP1-211ENST00000539080 OTUD7BQ6GQQ9 843 aa23.23■■□□□ 1.31
CLIP1-211ENST00000539080 MIGA2Q7L4E1 593 aa23.23■■□□□ 1.31
CLIP1-211ENST00000539080 TBC1D8O95759 1140 aa23.22■■□□□ 1.31
CLIP1-211ENST00000539080 ZAP70P43403 619 aa23.22■■□□□ 1.31
CLIP1-211ENST00000539080 NAA16Q6N069 864 aaPredicted RBP23.22■■□□□ 1.31
CLIP1-211ENST00000539080 ERO1BQ86YB8 467 aa23.22■■□□□ 1.31
CLIP1-211ENST00000539080 ZFPM1Q8IX07 1006 aa23.22■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms