RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 CENPHQ9H3R5 247 aa14.1□□□□□ -0.15
USP3-203ENST00000538686 CRYBG1Q9Y4K1 1723 aa14.1□□□□□ -0.15
USP3-203ENST00000538686 RAB11FIP3O75154 756 aa14.1□□□□□ -0.15
USP3-203ENST00000538686 ECM2O94769 699 aaPredicted RBP14.1□□□□□ -0.15
USP3-203ENST00000538686 PDIA5Q14554 519 aa14.1□□□□□ -0.15
USP3-203ENST00000538686 TBC1D25Q3MII6 688 aa14.1□□□□□ -0.15
USP3-203ENST00000538686 CYB5D1Q6P9G0 228 aa14.1□□□□□ -0.15
USP3-203ENST00000538686 TRIM74Q86UV6 250 aa14.1□□□□□ -0.15
USP3-203ENST00000538686 TRIM73Q86UV7 250 aa14.1□□□□□ -0.15
USP3-203ENST00000538686 FMR1NBQ8N0W7 255 aaPredicted RBP14.1□□□□□ -0.15
USP3-203ENST00000538686 EPB41L3Q9Y2J2 1087 aaPredicted RBP14.1□□□□□ -0.15
USP3-203ENST00000538686 GOLGA6BA6NDN3 693 aa14.09□□□□□ -0.15
USP3-203ENST00000538686 ZNF202O95125 648 aa14.09□□□□□ -0.15
USP3-203ENST00000538686 RTN3O95197 1032 aaPredicted RBP14.09□□□□□ -0.15
USP3-203ENST00000538686 NPM1P06748 294 aaKnown RBP eCLIP14.09□□□□□ -0.15
USP3-203ENST00000538686 EPB41P11171 864 aaKnown RBP14.09□□□□□ -0.15
USP3-203ENST00000538686 CPA1P15085 419 aa14.09□□□□□ -0.15
USP3-203ENST00000538686 CAPRIN2Q6IMN6 1127 aaKnown RBP14.09□□□□□ -0.15
USP3-203ENST00000538686 NAA16Q6N069 864 aaPredicted RBP14.09□□□□□ -0.15
USP3-203ENST00000538686 TOGARAM2Q6ZUX3 1019 aa14.09□□□□□ -0.15
USP3-203ENST00000538686 RIMS2Q9UQ26 1411 aa14.09□□□□□ -0.15
USP3-203ENST00000538686 ERICH2A1L162 156 aa14.08□□□□□ -0.15
USP3-203ENST00000538686 MAFGO15525 162 aa14.08□□□□□ -0.15
USP3-203ENST00000538686 MAP4K4O95819 1239 aaPredicted RBP14.08□□□□□ -0.15
USP3-203ENST00000538686 LMOD1P29536 600 aaPredicted RBP14.08□□□□□ -0.15
USP3-203ENST00000538686 NAP1L1P55209 391 aaKnown RBP14.08□□□□□ -0.15
USP3-203ENST00000538686 MYL5Q02045 173 aa14.08□□□□□ -0.15
USP3-203ENST00000538686 SETDB1Q15047 1291 aa14.08□□□□□ -0.15
USP3-203ENST00000538686 KRT24Q2M2I5 525 aa14.08□□□□□ -0.15
USP3-203ENST00000538686 RUBCNQ92622 972 aa14.08□□□□□ -0.15
USP3-203ENST00000538686 ZBTB10Q96DT7 871 aa14.08□□□□□ -0.15
USP3-203ENST00000538686 NAPGQ99747 312 aaPredicted RBP14.08□□□□□ -0.15
USP3-203ENST00000538686 SAMM50Q9Y512 469 aa14.08□□□□□ -0.15
USP3-203ENST00000538686 ZCCHC11Q5TAX3 1644 aaKnown RBP14.08□□□□□ -0.16
USP3-203ENST00000538686 IMPDH2P12268 514 aa14.08□□□□□ -0.16
USP3-203ENST00000538686 USP14P54578 494 aa14.08□□□□□ -0.16
USP3-203ENST00000538686 PRPF40BQ6NWY9 871 aaKnown RBP14.08□□□□□ -0.16
USP3-203ENST00000538686 SPDYE1Q8NFV5 336 aaPredicted RBP14.08□□□□□ -0.16
USP3-203ENST00000538686 CCDC114Q96M63 670 aa14.08□□□□□ -0.16
USP3-203ENST00000538686 CORO1CQ9ULV4 474 aaPredicted RBP14.08□□□□□ -0.16
USP3-203ENST00000538686 TBC1D2BQ9UPU7 963 aa14.08□□□□□ -0.16
USP3-203ENST00000538686 FRMPD1Q5SYB0 1578 aa14.08□□□□□ -0.16
USP3-203ENST00000538686 NPHP4O75161 1426 aaPredicted RBP14.07□□□□□ -0.16
USP3-203ENST00000538686 TET3O43151 1660 aa14.07□□□□□ -0.16
USP3-203ENST00000538686 SLC3A2P08195 630 aaKnown RBP14.07□□□□□ -0.16
USP3-203ENST00000538686 ATP8B2P98198 1209 aa14.07□□□□□ -0.16
USP3-203ENST00000538686 KARSQ15046 597 aaKnown RBP14.07□□□□□ -0.16
USP3-203ENST00000538686 ADCK5Q3MIX3 580 aa14.07□□□□□ -0.16
USP3-203ENST00000538686 ADALQ6DHV7 355 aa14.07□□□□□ -0.16
USP3-203ENST00000538686 P3H4Q92791 437 aa14.07□□□□□ -0.16
USP3-203ENST00000538686 KDM6AO15550 1401 aaPredicted RBP14.07□□□□□ -0.16
USP3-203ENST00000538686 ARHGEF10O15013 1369 aa14.07□□□□□ -0.16
USP3-203ENST00000538686 ABCC6O95255 1503 aa14.07□□□□□ -0.16
USP3-203ENST00000538686 FRMD3A2A2Y4 597 aa14.06□□□□□ -0.16
USP3-203ENST00000538686 H7C1W4 665 aa14.06□□□□□ -0.16
USP3-203ENST00000538686 CDKL5O76039 1030 aa14.06□□□□□ -0.16
USP3-203ENST00000538686 ADD1P35611 737 aaKnown RBP14.06□□□□□ -0.16
USP3-203ENST00000538686 PEX19P40855 299 aa14.06□□□□□ -0.16
USP3-203ENST00000538686 ME1P48163 572 aa14.06□□□□□ -0.16
USP3-203ENST00000538686 KCNB1Q14721 858 aa14.06□□□□□ -0.16
USP3-203ENST00000538686 NECTIN1Q15223 517 aa14.06□□□□□ -0.16
USP3-203ENST00000538686 RNF187Q5TA31 235 aaPredicted RBP14.06□□□□□ -0.16
USP3-203ENST00000538686 APLFQ8IW19 511 aaPredicted RBP14.06□□□□□ -0.16
USP3-203ENST00000538686 FUKQ8N0W3 1084 aa14.06□□□□□ -0.16
USP3-203ENST00000538686 C3orf20Q8ND61 904 aa14.06□□□□□ -0.16
USP3-203ENST00000538686 CCHCR1Q8TD31 782 aa14.06□□□□□ -0.16
USP3-203ENST00000538686 BRF1Q92994 677 aa14.06□□□□□ -0.16
USP3-203ENST00000538686 PANX2Q96RD6 677 aa14.06□□□□□ -0.16
USP3-203ENST00000538686 EPN3Q9H201 632 aa14.06□□□□□ -0.16
USP3-203ENST00000538686 TTF2Q9UNY4 1162 aaKnown RBP14.06□□□□□ -0.16
USP3-203ENST00000538686 AGPSO00116 658 aa14.06□□□□□ -0.16
USP3-203ENST00000538686 C1QTNF12Q5T7M4 302 aa14.06□□□□□ -0.16
USP3-203ENST00000538686 SPECC1LQ69YQ0 1117 aa14.06□□□□□ -0.16
USP3-203ENST00000538686 SLC30A9Q6PML9 568 aa14.06□□□□□ -0.16
USP3-203ENST00000538686 BLOC1S2Q6QNY1 142 aa14.06□□□□□ -0.16
USP3-203ENST00000538686 CRELD2Q6UXH1 353 aaPredicted RBP14.06□□□□□ -0.16
USP3-203ENST00000538686 RBM12BQ8IXT5 1001 aaKnown RBP14.06□□□□□ -0.16
USP3-203ENST00000538686 TC2NQ8N9U0 490 aa14.06□□□□□ -0.16
USP3-203ENST00000538686 TRIM58Q8NG06 486 aa14.06□□□□□ -0.16
USP3-203ENST00000538686 FMNL2Q96PY5 1086 aa14.06□□□□□ -0.16
USP3-203ENST00000538686 SPAG5Q96R06 1193 aa14.06□□□□□ -0.16
USP3-203ENST00000538686 CCDC38Q502W7 563 aa14.05□□□□□ -0.16
USP3-203ENST00000538686 ZNF569Q5MCW4 686 aa14.05□□□□□ -0.16
USP3-203ENST00000538686 CCDC121Q6ZUS5 278 aa14.05□□□□□ -0.16
USP3-203ENST00000538686 SDCCAG8Q86SQ7 713 aaPredicted RBP14.05□□□□□ -0.16
USP3-203ENST00000538686 CCDC170Q8IYT3 715 aa14.05□□□□□ -0.16
USP3-203ENST00000538686 PI4K2BQ8TCG2 481 aa14.05□□□□□ -0.16
USP3-203ENST00000538686 SCLT1Q96NL6 688 aa14.05□□□□□ -0.16
USP3-203ENST00000538686 KIF1BO60333 1816 aa14.05□□□□□ -0.16
USP3-203ENST00000538686 PPFIA3O75145 1194 aa14.05□□□□□ -0.16
USP3-203ENST00000538686 FERP16591 822 aa14.05□□□□□ -0.16
USP3-203ENST00000538686 MIS18BP1Q6P0N0 1132 aa14.05□□□□□ -0.16
USP3-203ENST00000538686 NFXL1Q6ZNB6 911 aa14.05□□□□□ -0.16
USP3-203ENST00000538686 LLPHQ9BRT6 129 aaKnown RBP14.05□□□□□ -0.16
USP3-203ENST00000538686 MRPL44Q9H9J2 332 aaKnown RBP14.05□□□□□ -0.16
USP3-203ENST00000538686 EBF2Q9HAK2 575 aa14.05□□□□□ -0.16
USP3-203ENST00000538686 HOOK1Q9UJC3 728 aaKnown RBP14.05□□□□□ -0.16
USP3-203ENST00000538686 TPX2Q9ULW0 747 aaKnown RBP14.05□□□□□ -0.16
USP3-203ENST00000538686 TRPC6Q9Y210 931 aa14.05□□□□□ -0.16
USP3-203ENST00000538686 A0A087WWV3 80 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms