RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 GNL3LQ9NVN8 582 aaKnown RBP13.17□□□□□ -0.3
CD44-227ENST00000528086 EXOC6BQ9Y2D4 811 aa13.17□□□□□ -0.3
CD44-227ENST00000528086 ATRNL1Q5VV63 1379 aa13.17□□□□□ -0.3
CD44-227ENST00000528086 RHBDL3P58872 404 aa13.16□□□□□ -0.3
CD44-227ENST00000528086 ARMC9Q7Z3E5 817 aa13.16□□□□□ -0.3
CD44-227ENST00000528086 FAM83AQ86UY5 434 aa13.16□□□□□ -0.3
CD44-227ENST00000528086 TNS4Q8IZW8 715 aa13.16□□□□□ -0.3
CD44-227ENST00000528086 SPATA5Q8NB90 893 aa13.16□□□□□ -0.3
CD44-227ENST00000528086 CCDC8Q9H0W5 538 aaPredicted RBP13.16□□□□□ -0.3
CD44-227ENST00000528086 DDX4Q9NQI0 724 aaKnown RBP13.16□□□□□ -0.3
CD44-227ENST00000528086 SNRKQ9NRH2 765 aa13.16□□□□□ -0.3
CD44-227ENST00000528086 MAST3O60307 1309 aa13.15□□□□□ -0.3
CD44-227ENST00000528086 AK9Q5TCS8 1911 aa13.15□□□□□ -0.3
CD44-227ENST00000528086 WDHD1O75717 1129 aaPredicted RBP13.15□□□□□ -0.3
CD44-227ENST00000528086 TRPA1O75762 1119 aa13.15□□□□□ -0.3
CD44-227ENST00000528086 CYP2E1P05181 493 aaPredicted RBP13.15□□□□□ -0.3
CD44-227ENST00000528086 NF2P35240 595 aa13.15□□□□□ -0.3
CD44-227ENST00000528086 TM4SF4P48230 202 aa13.15□□□□□ -0.3
CD44-227ENST00000528086 MECOMQ03112 1051 aa13.15□□□□□ -0.3
CD44-227ENST00000528086 SUPT20HL1Q3ZLR7 823 aa13.15□□□□□ -0.3
CD44-227ENST00000528086 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.15□□□□□ -0.3
CD44-227ENST00000528086 NSUN4Q96CB9 384 aaKnown RBP13.15□□□□□ -0.3
CD44-227ENST00000528086 WNK4Q96J92 1243 aa13.15□□□□□ -0.3
CD44-227ENST00000528086 ABCF2Q9UG63 623 aa13.15□□□□□ -0.3
CD44-227ENST00000528086 RPAP1Q9BWH6 1393 aaPredicted RBP13.15□□□□□ -0.3
CD44-227ENST00000528086 SIPA1L1O43166 1804 aa13.15□□□□□ -0.3
CD44-227ENST00000528086 DOCK2Q92608 1830 aa13.14□□□□□ -0.31
CD44-227ENST00000528086 TCP10Q12799 353 aa13.14□□□□□ -0.31
CD44-227ENST00000528086 TNFAIP1Q13829 316 aa13.14□□□□□ -0.31
CD44-227ENST00000528086 PDE3AQ14432 1141 aa13.14□□□□□ -0.31
CD44-227ENST00000528086 ADGRA1Q86SQ6 560 aa13.14□□□□□ -0.31
CD44-227ENST00000528086 PIH1D3Q9NQM4 214 aaKnown RBP13.14□□□□□ -0.31
CD44-227ENST00000528086 DDX19BQ9UMR2 479 aa13.14□□□□□ -0.31
CD44-227ENST00000528086 NDUFB9Q9Y6M9 179 aa13.14□□□□□ -0.31
CD44-227ENST00000528086 MAST2Q6P0Q8 1798 aa13.13□□□□□ -0.31
CD44-227ENST00000528086 GPR75-ASB3A0A0A6YYF3 556 aa13.13□□□□□ -0.31
CD44-227ENST00000528086 IGF2BP3O00425 579 aaKnown RBP eCLIP13.13□□□□□ -0.31
CD44-227ENST00000528086 PPP1R12BO60237 982 aaPredicted RBP13.13□□□□□ -0.31
CD44-227ENST00000528086 ZAP70P43403 619 aa13.13□□□□□ -0.31
CD44-227ENST00000528086 FAM151AQ8WW52 585 aa13.13□□□□□ -0.31
CD44-227ENST00000528086 SLC10A4Q96EP9 437 aa13.13□□□□□ -0.31
CD44-227ENST00000528086 MS4A4AQ96JQ5 239 aa13.13□□□□□ -0.31
CD44-227ENST00000528086 ZNF512BQ96KM6 892 aaPredicted RBP13.13□□□□□ -0.31
CD44-227ENST00000528086 PTPN18Q99952 460 aa13.13□□□□□ -0.31
CD44-227ENST00000528086 IDI2Q9BXS1 227 aa13.13□□□□□ -0.31
CD44-227ENST00000528086 IL1RAPL2Q9NP60 686 aa13.13□□□□□ -0.31
CD44-227ENST00000528086 USP40Q9NVE5 1235 aa13.13□□□□□ -0.31
CD44-227ENST00000528086 SAGE1Q9NXZ1 904 aa13.13□□□□□ -0.31
CD44-227ENST00000528086 SNCAIPQ9Y6H5 919 aa13.13□□□□□ -0.31
CD44-227ENST00000528086 FOCADQ5VW36 1801 aa13.13□□□□□ -0.31
CD44-227ENST00000528086 HTTP42858 3142 aa13.13□□□□□ -0.31
CD44-227ENST00000528086 MROH7-TTC4A0A0A0MT08 1334 aa13.13□□□□□ -0.31
CD44-227ENST00000528086 CA12O43570 354 aa13.12□□□□□ -0.31
CD44-227ENST00000528086 INPP5BP32019 993 aa13.12□□□□□ -0.31
CD44-227ENST00000528086 RGS3P49796 1198 aa13.12□□□□□ -0.31
CD44-227ENST00000528086 CAP1Q01518 475 aa13.12□□□□□ -0.31
CD44-227ENST00000528086 VGLL4Q14135 290 aa13.12□□□□□ -0.31
CD44-227ENST00000528086 MIGA2Q7L4E1 593 aa13.12□□□□□ -0.31
CD44-227ENST00000528086 RPAP2Q8IXW5 612 aaPredicted RBP13.12□□□□□ -0.31
CD44-227ENST00000528086 RHPN1Q8TCX5 695 aa13.12□□□□□ -0.31
CD44-227ENST00000528086 ZKSCAN4Q969J2 545 aaPredicted RBP13.12□□□□□ -0.31
CD44-227ENST00000528086 ANTXR1Q9H6X2 564 aa13.12□□□□□ -0.31
CD44-227ENST00000528086 ELP3Q9H9T3 547 aa13.12□□□□□ -0.31
CD44-227ENST00000528086 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.12□□□□□ -0.31
CD44-227ENST00000528086 ZNF112Q9UJU3 913 aa13.12□□□□□ -0.31
CD44-227ENST00000528086 PHIPQ8WWQ0 1821 aa13.11□□□□□ -0.31
CD44-227ENST00000528086 TESPA1A2RU30 521 aaPredicted RBP13.11□□□□□ -0.31
CD44-227ENST00000528086 DDTLA6NHG4 134 aaPredicted RBP13.11□□□□□ -0.31
CD44-227ENST00000528086 UNCXA6NJT0 531 aa13.11□□□□□ -0.31
CD44-227ENST00000528086 PHF20L1A8MW92 1017 aa13.11□□□□□ -0.31
CD44-227ENST00000528086 TBC1D8O95759 1140 aa13.11□□□□□ -0.31
CD44-227ENST00000528086 UQCRFS1P1P0C7P4 283 aa13.11□□□□□ -0.31
CD44-227ENST00000528086 MS4A1P11836 297 aa13.11□□□□□ -0.31
CD44-227ENST00000528086 BTDP43251 543 aa13.11□□□□□ -0.31
CD44-227ENST00000528086 IREB2P48200 963 aaKnown RBP13.11□□□□□ -0.31
CD44-227ENST00000528086 TNNI2P48788 182 aa13.11□□□□□ -0.31
CD44-227ENST00000528086 MAP3K9P80192 1104 aa13.11□□□□□ -0.31
CD44-227ENST00000528086 MAP3K10Q02779 954 aa13.11□□□□□ -0.31
CD44-227ENST00000528086 OS9Q13438 667 aaPredicted RBP13.11□□□□□ -0.31
CD44-227ENST00000528086 ERICH6Q7L0X2 663 aa13.11□□□□□ -0.31
CD44-227ENST00000528086 ANKRD13AQ8IZ07 590 aa13.11□□□□□ -0.31
CD44-227ENST00000528086 ZGPATQ8N5A5 531 aaKnown RBP13.11□□□□□ -0.31
CD44-227ENST00000528086 BEGAINQ9BUH8 593 aa13.11□□□□□ -0.31
CD44-227ENST00000528086 ZBTB48P10074 688 aaPredicted RBP13.1□□□□□ -0.31
CD44-227ENST00000528086 GORABQ5T7V8 394 aa13.1□□□□□ -0.31
CD44-227ENST00000528086 DZIP1Q86YF9 867 aaKnown RBP13.1□□□□□ -0.31
CD44-227ENST00000528086 OPTNQ96CV9 577 aa13.1□□□□□ -0.31
CD44-227ENST00000528086 PTPRFP10586 1907 aa13.09□□□□□ -0.31
CD44-227ENST00000528086 RRP1BQ14684 758 aaKnown RBP13.09□□□□□ -0.31
CD44-227ENST00000528086 TTC39AQ5SRH9 613 aa13.09□□□□□ -0.31
CD44-227ENST00000528086 SPTY2D1Q68D10 685 aaPredicted RBP13.09□□□□□ -0.31
CD44-227ENST00000528086 AACSQ86V21 672 aa13.09□□□□□ -0.31
CD44-227ENST00000528086 IFNL1Q8IU54 200 aa13.09□□□□□ -0.31
CD44-227ENST00000528086 BRI3BPQ8WY22 251 aa13.09□□□□□ -0.31
CD44-227ENST00000528086 CFHR5Q9BXR6 569 aa13.09□□□□□ -0.31
CD44-227ENST00000528086 TMOD2Q9NZR1 351 aa13.09□□□□□ -0.31
CD44-227ENST00000528086 PCDHB15Q9Y5E8 787 aa13.09□□□□□ -0.31
CD44-227ENST00000528086 SPDYE5A6NIY4 337 aa13.08□□□□□ -0.32
CD44-227ENST00000528086 APBB1O00213 710 aa13.08□□□□□ -0.32
CD44-227ENST00000528086 ENTPD3O75355 529 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms