RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 SNAPC2Q13487 334 aa29.5■■■□□ 2.31
CPSF1-202ENST00000527827 DCAF15Q66K64 600 aa29.5■■■□□ 2.31
CPSF1-202ENST00000527827 SLFN5Q08AF3 891 aa29.49■■■□□ 2.31
CPSF1-202ENST00000527827 MIGA2Q7L4E1 593 aa29.49■■■□□ 2.31
CPSF1-202ENST00000527827 GCC1Q96CN9 775 aa29.49■■■□□ 2.31
CPSF1-202ENST00000527827 ZNF341Q9BYN7 854 aa29.49■■■□□ 2.31
CPSF1-202ENST00000527827 ARHGAP39Q9C0H5 1083 aa29.49■■■□□ 2.31
CPSF1-202ENST00000527827 SLC9C1Q4G0N8 1177 aa29.48■■■□□ 2.31
CPSF1-202ENST00000527827 AK9Q5TCS8 1911 aa29.47■■■□□ 2.31
CPSF1-202ENST00000527827 WDHD1O75717 1129 aaPredicted RBP29.47■■■□□ 2.31
CPSF1-202ENST00000527827 INPP5BP32019 993 aa29.47■■■□□ 2.31
CPSF1-202ENST00000527827 FAM151AQ8WW52 585 aa29.47■■■□□ 2.31
CPSF1-202ENST00000527827 TMEM106CQ9BVX2 250 aa29.47■■■□□ 2.31
CPSF1-202ENST00000527827 DAGLAQ9Y4D2 1042 aa29.47■■■□□ 2.31
CPSF1-202ENST00000527827 LACTBP83111 547 aaPredicted RBP29.46■■■□□ 2.31
CPSF1-202ENST00000527827 PPATQ06203 517 aa29.46■■■□□ 2.31
CPSF1-202ENST00000527827 DIXDC1Q155Q3 683 aa29.46■■■□□ 2.31
CPSF1-202ENST00000527827 ALDH1L2Q3SY69 923 aa29.46■■■□□ 2.31
CPSF1-202ENST00000527827 CDC42EP5Q6NZY7 148 aa29.46■■■□□ 2.31
CPSF1-202ENST00000527827 NBPF11Q86T75 865 aa29.46■■■□□ 2.31
CPSF1-202ENST00000527827 PRDX5P30044 214 aa29.45■■■□□ 2.31
CPSF1-202ENST00000527827 ZNF112Q9UJU3 913 aa29.45■■■□□ 2.31
CPSF1-202ENST00000527827 TCP10Q12799 353 aa29.44■■■□□ 2.3
CPSF1-202ENST00000527827 NFIAQ12857 509 aa29.44■■■□□ 2.3
CPSF1-202ENST00000527827 GOLGA6L2Q8N9W4 650 aaPredicted RBP29.44■■■□□ 2.3
CPSF1-202ENST00000527827 KIF22Q14807 665 aa29.43■■■□□ 2.3
CPSF1-202ENST00000527827 ATP2B3Q16720 1220 aa29.43■■■□□ 2.3
CPSF1-202ENST00000527827 CDCA7LQ96GN5 454 aa29.43■■■□□ 2.3
CPSF1-202ENST00000527827 SIL1Q9H173 461 aa29.43■■■□□ 2.3
CPSF1-202ENST00000527827 SMC4Q9NTJ3 1288 aa29.43■■■□□ 2.3
CPSF1-202ENST00000527827 FBXO3Q9UK99 471 aa29.43■■■□□ 2.3
CPSF1-202ENST00000527827 CIAO1O76071 339 aa29.42■■■□□ 2.3
CPSF1-202ENST00000527827 HABP4Q5JVS0 413 aaKnown RBP29.42■■■□□ 2.3
CPSF1-202ENST00000527827 C17orf99Q6UX52 265 aa29.41■■■□□ 2.3
CPSF1-202ENST00000527827 SH3TC2Q8TF17 1288 aa29.41■■■□□ 2.3
CPSF1-202ENST00000527827 CEP126Q9P2H0 1117 aa29.41■■■□□ 2.3
CPSF1-202ENST00000527827 FAM198AQ9UFP1 575 aa29.41■■■□□ 2.3
CPSF1-202ENST00000527827 KCNH4Q9UQ05 1017 aa29.41■■■□□ 2.3
CPSF1-202ENST00000527827 GNRH1P01148 92 aa29.4■■■□□ 2.3
CPSF1-202ENST00000527827 UBTFL1P0CB47 393 aaPredicted RBP29.4■■■□□ 2.3
CPSF1-202ENST00000527827 SLC4A8Q2Y0W8 1093 aa29.4■■■□□ 2.3
CPSF1-202ENST00000527827 ANKRD23Q86SG2 305 aa29.4■■■□□ 2.3
CPSF1-202ENST00000527827 SALL1Q9NSC2 1324 aa29.4■■■□□ 2.3
CPSF1-202ENST00000527827 MYCP01106 439 aaPredicted RBP29.39■■■□□ 2.3
CPSF1-202ENST00000527827 LDHBP07195 334 aaKnown RBP29.39■■■□□ 2.3
CPSF1-202ENST00000527827 CTGFP29279 349 aa29.39■■■□□ 2.3
CPSF1-202ENST00000527827 MOGSQ13724 837 aa29.39■■■□□ 2.3
CPSF1-202ENST00000527827 NOL9Q5SY16 702 aaKnown RBP29.39■■■□□ 2.3
CPSF1-202ENST00000527827 USP40Q9NVE5 1235 aa29.39■■■□□ 2.3
CPSF1-202ENST00000527827 GNL3LQ9NVN8 582 aaKnown RBP29.39■■■□□ 2.3
CPSF1-202ENST00000527827 CPA4Q9UI42 421 aa29.39■■■□□ 2.3
CPSF1-202ENST00000527827 ADGRA2Q96PE1 1338 aa29.39■■■□□ 2.3
CPSF1-202ENST00000527827 MYH2Q9UKX2 1941 aa29.38■■■□□ 2.29
CPSF1-202ENST00000527827 PHKA1P46020 1223 aa29.38■■■□□ 2.29
CPSF1-202ENST00000527827 ZFPM1Q8IX07 1006 aa29.38■■■□□ 2.29
CPSF1-202ENST00000527827 TRMT2AQ8IZ69 625 aaKnown RBP29.38■■■□□ 2.29
CPSF1-202ENST00000527827 PDHXO00330 501 aa29.37■■■□□ 2.29
CPSF1-202ENST00000527827 PRMT2P55345 433 aa29.37■■■□□ 2.29
CPSF1-202ENST00000527827 DENND2AQ9ULE3 1009 aa29.37■■■□□ 2.29
CPSF1-202ENST00000527827 PA2G4Q9UQ80 394 aaKnown RBP29.37■■■□□ 2.29
CPSF1-202ENST00000527827 DOCK2Q92608 1830 aa29.36■■■□□ 2.29
CPSF1-202ENST00000527827 SEMA3EO15041 775 aa29.36■■■□□ 2.29
CPSF1-202ENST00000527827 ECM2O94769 699 aaPredicted RBP29.36■■■□□ 2.29
CPSF1-202ENST00000527827 LRRFIP2Q9Y608 721 aaKnown RBP29.36■■■□□ 2.29
CPSF1-202ENST00000527827 ATRNL1Q5VV63 1379 aa29.36■■■□□ 2.29
CPSF1-202ENST00000527827 ZBTB22O15209 634 aa29.35■■■□□ 2.29
CPSF1-202ENST00000527827 IL15P40933 162 aaPredicted RBP29.35■■■□□ 2.29
CPSF1-202ENST00000527827 TRIM47Q96LD4 638 aa29.35■■■□□ 2.29
CPSF1-202ENST00000527827 NOB1Q9ULX3 412 aaKnown RBP29.35■■■□□ 2.29
CPSF1-202ENST00000527827 ADORA1P30542 326 aa29.34■■■□□ 2.29
CPSF1-202ENST00000527827 PSMC4P43686 418 aa29.34■■■□□ 2.29
CPSF1-202ENST00000527827 SRRDQ9UH36 339 aa29.34■■■□□ 2.29
CPSF1-202ENST00000527827 COPRSQ9NQ92 184 aa29.33■■■□□ 2.29
CPSF1-202ENST00000527827 PHF20L1A8MW92 1017 aa29.32■■■□□ 2.28
CPSF1-202ENST00000527827 RGS3P49796 1198 aa29.32■■■□□ 2.28
CPSF1-202ENST00000527827 CCDC102BQ68D86 513 aa29.32■■■□□ 2.28
CPSF1-202ENST00000527827 GPAT2Q6NUI2 795 aa29.32■■■□□ 2.28
CPSF1-202ENST00000527827 IDI2Q9BXS1 227 aa29.32■■■□□ 2.28
CPSF1-202ENST00000527827 RFX7Q2KHR2 1363 aa29.31■■■□□ 2.28
CPSF1-202ENST00000527827 GAKO14976 1311 aa29.31■■■□□ 2.28
CPSF1-202ENST00000527827 OSBPP22059 807 aa29.31■■■□□ 2.28
CPSF1-202ENST00000527827 CEP290O15078 2479 aa29.3■■■□□ 2.28
CPSF1-202ENST00000527827 MGAMO43451 1857 aa29.3■■■□□ 2.28
CPSF1-202ENST00000527827 CXCL11O14625 94 aa29.3■■■□□ 2.28
CPSF1-202ENST00000527827 ENTPD3O75355 529 aa29.3■■■□□ 2.28
CPSF1-202ENST00000527827 CT47B1P0C2W7 299 aaPredicted RBP29.3■■■□□ 2.28
CPSF1-202ENST00000527827 MTFR1Q15390 333 aa29.3■■■□□ 2.28
CPSF1-202ENST00000527827 SH3BP5LQ7L8J4 393 aa29.3■■■□□ 2.28
CPSF1-202ENST00000527827 MEIS3Q99687 375 aa29.3■■■□□ 2.28
CPSF1-202ENST00000527827 API5Q9BZZ5 524 aaKnown RBP29.3■■■□□ 2.28
CPSF1-202ENST00000527827 RASGRF1Q13972 1273 aa29.29■■■□□ 2.28
CPSF1-202ENST00000527827 HDAC5Q9UQL6 1122 aa29.29■■■□□ 2.28
CPSF1-202ENST00000527827 FMNL1O95466 1100 aaPredicted RBP29.28■■■□□ 2.28
CPSF1-202ENST00000527827 BCRP11274 1271 aa29.28■■■□□ 2.28
CPSF1-202ENST00000527827 HOXD10P28358 340 aa29.28■■■□□ 2.28
CPSF1-202ENST00000527827 TIMM10P62072 90 aa29.28■■■□□ 2.28
CPSF1-202ENST00000527827 SCYL3Q8IZE3 742 aa29.28■■■□□ 2.28
CPSF1-202ENST00000527827 ZGPATQ8N5A5 531 aaKnown RBP29.28■■■□□ 2.28
CPSF1-202ENST00000527827 SHISA4Q96DD7 197 aa29.28■■■□□ 2.28
CPSF1-202ENST00000527827 PTPRFP10586 1907 aa29.28■■■□□ 2.28
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms