RNA–Protein interactions for RNA: ENST00000527413.1

SSSCA1-204, Transcript of Sjogren syndrome/scleroderma autoantigen 1, humanhuman

TSL 2

Gene SSSCA1, Length 532 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1-204ENST00000527413 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.83■□□□□ 0.28
SSSCA1-204ENST00000527413 GPR25O00155 361 aa16.82■□□□□ 0.28
SSSCA1-204ENST00000527413 RLBP1P12271 317 aa16.82■□□□□ 0.28
SSSCA1-204ENST00000527413 G3BP1Q13283 466 aaKnown RBP eCLIP16.82■□□□□ 0.28
SSSCA1-204ENST00000527413 VGLL4Q14135 290 aa16.82■□□□□ 0.28
SSSCA1-204ENST00000527413 POLA2Q14181 598 aa16.82■□□□□ 0.28
SSSCA1-204ENST00000527413 CDC42EP5Q6NZY7 148 aa16.82■□□□□ 0.28
SSSCA1-204ENST00000527413 ITPRIPQ8IWB1 547 aa16.82■□□□□ 0.28
SSSCA1-204ENST00000527413 ZNF296Q8WUU4 475 aaPredicted RBP16.82■□□□□ 0.28
SSSCA1-204ENST00000527413 OPTNQ96CV9 577 aa16.82■□□□□ 0.28
SSSCA1-204ENST00000527413 HOOK2Q96ED9 719 aa16.82■□□□□ 0.28
SSSCA1-204ENST00000527413 IGF2BP3O00425 579 aaKnown RBP eCLIP16.81■□□□□ 0.28
SSSCA1-204ENST00000527413 MAP3K9P80192 1104 aa16.81■□□□□ 0.28
SSSCA1-204ENST00000527413 NEUROD6Q96NK8 337 aa16.81■□□□□ 0.28
SSSCA1-204ENST00000527413 C1orf115Q9H7X2 142 aa16.81■□□□□ 0.28
SSSCA1-204ENST00000527413 CSADQ9Y600 493 aa16.81■□□□□ 0.28
SSSCA1-204ENST00000527413 MYO5AQ9Y4I1 1855 aaKnown RBP16.81■□□□□ 0.28
SSSCA1-204ENST00000527413 GAKO14976 1311 aa16.8■□□□□ 0.28
SSSCA1-204ENST00000527413 DCAF15Q66K64 600 aa16.8■□□□□ 0.28
SSSCA1-204ENST00000527413 DZIP1Q86YF9 867 aaKnown RBP16.8■□□□□ 0.28
SSSCA1-204ENST00000527413 SSH3Q8TE77 659 aa16.8■□□□□ 0.28
SSSCA1-204ENST00000527413 FAM151AQ8WW52 585 aa16.8■□□□□ 0.28
SSSCA1-204ENST00000527413 CNKSR2Q8WXI2 1034 aa16.8■□□□□ 0.28
SSSCA1-204ENST00000527413 R3HDMLQ9H3Y0 253 aa16.8■□□□□ 0.28
SSSCA1-204ENST00000527413 ABCF2Q9UG63 623 aa16.8■□□□□ 0.28
SSSCA1-204ENST00000527413 RFX7Q2KHR2 1363 aa16.79■□□□□ 0.28
SSSCA1-204ENST00000527413 TESPA1A2RU30 521 aaPredicted RBP16.79■□□□□ 0.28
SSSCA1-204ENST00000527413 ATP8B2P98198 1209 aa16.79■□□□□ 0.28
SSSCA1-204ENST00000527413 NFIAQ12857 509 aa16.79■□□□□ 0.28
SSSCA1-204ENST00000527413 GORABQ5T7V8 394 aa16.79■□□□□ 0.28
SSSCA1-204ENST00000527413 SPTY2D1Q68D10 685 aaPredicted RBP16.79■□□□□ 0.28
SSSCA1-204ENST00000527413 WRNIP1Q96S55 665 aa16.79■□□□□ 0.28
SSSCA1-204ENST00000527413 SNCAIPQ9Y6H5 919 aa16.79■□□□□ 0.28
SSSCA1-204ENST00000527413 CDK5RAP2Q96SN8 1893 aa16.78■□□□□ 0.28
SSSCA1-204ENST00000527413 SPDYE5A6NIY4 337 aa16.78■□□□□ 0.28
SSSCA1-204ENST00000527413 ZBTB7BO15156 539 aaPredicted RBP16.78■□□□□ 0.28
SSSCA1-204ENST00000527413 FKTNO75072 461 aa16.78■□□□□ 0.28
SSSCA1-204ENST00000527413 ARID4AP29374 1257 aaPredicted RBP16.78■□□□□ 0.28
SSSCA1-204ENST00000527413 TCP10Q12799 353 aa16.78■□□□□ 0.28
SSSCA1-204ENST00000527413 PI16Q6UXB8 463 aa16.78■□□□□ 0.28
SSSCA1-204ENST00000527413 OTUD5Q96G74 571 aa16.78■□□□□ 0.28
SSSCA1-204ENST00000527413 MS4A4AQ96JQ5 239 aa16.78■□□□□ 0.28
SSSCA1-204ENST00000527413 ZNF341Q9BYN7 854 aa16.78■□□□□ 0.28
SSSCA1-204ENST00000527413 USP40Q9NVE5 1235 aa16.78■□□□□ 0.28
SSSCA1-204ENST00000527413 HMG20BQ9P0W2 317 aa16.78■□□□□ 0.28
SSSCA1-204ENST00000527413 FAM198AQ9UFP1 575 aa16.78■□□□□ 0.28
SSSCA1-204ENST00000527413 DOCK1Q14185 1865 aa16.78■□□□□ 0.28
SSSCA1-204ENST00000527413 MROH7-TTC4A0A0A0MT08 1334 aa16.77■□□□□ 0.28
SSSCA1-204ENST00000527413 OS9Q13438 667 aaPredicted RBP16.77■□□□□ 0.28
SSSCA1-204ENST00000527413 OTUD7BQ6GQQ9 843 aa16.77■□□□□ 0.28
SSSCA1-204ENST00000527413 SLF2Q8IX21 1173 aa16.77■□□□□ 0.28
SSSCA1-204ENST00000527413 SPATA5Q8NB90 893 aa16.77■□□□□ 0.28
SSSCA1-204ENST00000527413 PTPN18Q99952 460 aa16.77■□□□□ 0.28
SSSCA1-204ENST00000527413 GPR108Q9NPR9 543 aa16.77■□□□□ 0.28
SSSCA1-204ENST00000527413 FOCADQ5VW36 1801 aa16.77■□□□□ 0.27
SSSCA1-204ENST00000527413 SURF6O75683 361 aaKnown RBP16.76■□□□□ 0.27
SSSCA1-204ENST00000527413 GTF2A2P52657 109 aa16.76■□□□□ 0.27
SSSCA1-204ENST00000527413 MECOMQ03112 1051 aa16.76■□□□□ 0.27
SSSCA1-204ENST00000527413 PKN2Q16513 984 aaKnown RBP16.76■□□□□ 0.27
SSSCA1-204ENST00000527413 TNNI3KQ59H18 835 aa16.76■□□□□ 0.27
SSSCA1-204ENST00000527413 ERICH6Q7L0X2 663 aa16.76■□□□□ 0.27
SSSCA1-204ENST00000527413 MIGA2Q7L4E1 593 aa16.76■□□□□ 0.27
SSSCA1-204ENST00000527413 ERO1BQ86YB8 467 aa16.76■□□□□ 0.27
SSSCA1-204ENST00000527413 BRI3BPQ8WY22 251 aa16.76■□□□□ 0.27
SSSCA1-204ENST00000527413 ZKSCAN4Q969J2 545 aaPredicted RBP16.76■□□□□ 0.27
SSSCA1-204ENST00000527413 FAM163AQ96GL9 167 aaPredicted RBP16.76■□□□□ 0.27
SSSCA1-204ENST00000527413 IDI2Q9BXS1 227 aa16.76■□□□□ 0.27
SSSCA1-204ENST00000527413 FPGT-TNNI3KV9GXZ4 949 aa16.76■□□□□ 0.27
SSSCA1-204ENST00000527413 PTPRFP10586 1907 aa16.75■□□□□ 0.27
SSSCA1-204ENST00000527413 CCL15-CCL14A0A0B4J2E2 113 aa16.75■□□□□ 0.27
SSSCA1-204ENST00000527413 MCAMP43121 646 aa16.75■□□□□ 0.27
SSSCA1-204ENST00000527413 BTDP43251 543 aa16.75■□□□□ 0.27
SSSCA1-204ENST00000527413 RGS3P49796 1198 aa16.75■□□□□ 0.27
SSSCA1-204ENST00000527413 CRHR2Q13324 411 aa16.75■□□□□ 0.27
SSSCA1-204ENST00000527413 CCL15Q16663 113 aa16.75■□□□□ 0.27
SSSCA1-204ENST00000527413 PANK1Q8TE04 598 aa16.75■□□□□ 0.27
SSSCA1-204ENST00000527413 ATRNL1Q5VV63 1379 aa16.75■□□□□ 0.27
SSSCA1-204ENST00000527413 ATAD5Q96QE3 1844 aa16.75■□□□□ 0.27
SSSCA1-204ENST00000527413 ENTPD3O75355 529 aa16.74■□□□□ 0.27
SSSCA1-204ENST00000527413 UQCRFS1P1P0C7P4 283 aa16.74■□□□□ 0.27
SSSCA1-204ENST00000527413 INPP5BP32019 993 aa16.74■□□□□ 0.27
SSSCA1-204ENST00000527413 CEP85Q6P2H3 762 aa16.74■□□□□ 0.27
SSSCA1-204ENST00000527413 ZNF384Q8TF68 577 aa16.74■□□□□ 0.27
SSSCA1-204ENST00000527413 HPS5Q9UPZ3 1129 aa16.74■□□□□ 0.27
SSSCA1-204ENST00000527413 NOP58Q9Y2X3 529 aaKnown RBP16.74■□□□□ 0.27
SSSCA1-204ENST00000527413 PHIPQ8WWQ0 1821 aa16.74■□□□□ 0.27
SSSCA1-204ENST00000527413 WDHD1O75717 1129 aaPredicted RBP16.73■□□□□ 0.27
SSSCA1-204ENST00000527413 RGS19P49795 217 aa16.73■□□□□ 0.27
SSSCA1-204ENST00000527413 PPIL2Q13356 520 aa16.73■□□□□ 0.27
SSSCA1-204ENST00000527413 TTC39AQ5SRH9 613 aa16.73■□□□□ 0.27
SSSCA1-204ENST00000527413 TBC1D9Q6ZT07 1266 aa16.73■□□□□ 0.27
SSSCA1-204ENST00000527413 ZFPM1Q8IX07 1006 aa16.73■□□□□ 0.27
SSSCA1-204ENST00000527413 NSUN4Q96CB9 384 aaKnown RBP16.73■□□□□ 0.27
SSSCA1-204ENST00000527413 DBNDD2Q9BQY9 259 aa16.73■□□□□ 0.27
SSSCA1-204ENST00000527413 DDX4Q9NQI0 724 aaKnown RBP16.73■□□□□ 0.27
SSSCA1-204ENST00000527413 ZNF112Q9UJU3 913 aa16.73■□□□□ 0.27
SSSCA1-204ENST00000527413 ZSWIM8A7E2V4 1837 aa16.73■□□□□ 0.27
SSSCA1-204ENST00000527413 GPR75-ASB3A0A0A6YYF3 556 aa16.72■□□□□ 0.27
SSSCA1-204ENST00000527413 IRF6O14896 467 aa16.72■□□□□ 0.27
SSSCA1-204ENST00000527413 MS4A1P11836 297 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms