RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 LRP2BPQ9P2M1 347 aa19.97■□□□□ 0.79
LSM1-205ENST00000523511 DAGLAQ9Y4D2 1042 aa19.97■□□□□ 0.79
LSM1-205ENST00000523511 POLR2AP24928 1970 aaKnown RBP19.97■□□□□ 0.79
LSM1-205ENST00000523511 MAP4K4O95819 1239 aaPredicted RBP19.96■□□□□ 0.79
LSM1-205ENST00000523511 ZBTB48P10074 688 aaPredicted RBP19.96■□□□□ 0.79
LSM1-205ENST00000523511 DIXDC1Q155Q3 683 aa19.96■□□□□ 0.79
LSM1-205ENST00000523511 ZNF512BQ96KM6 892 aaPredicted RBP19.96■□□□□ 0.79
LSM1-205ENST00000523511 RAI14Q9P0K7 980 aa19.96■□□□□ 0.79
LSM1-205ENST00000523511 CSADQ9Y600 493 aa19.96■□□□□ 0.79
LSM1-205ENST00000523511 AOX1Q06278 1338 aa19.96■□□□□ 0.79
LSM1-205ENST00000523511 MANSC4A6NHS7 340 aaPredicted RBP19.95■□□□□ 0.78
LSM1-205ENST00000523511 RAB11FIP3O75154 756 aa19.95■□□□□ 0.78
LSM1-205ENST00000523511 TRPA1O75762 1119 aa19.95■□□□□ 0.78
LSM1-205ENST00000523511 TM4SF4P48230 202 aa19.95■□□□□ 0.78
LSM1-205ENST00000523511 CACNB3P54284 484 aa19.95■□□□□ 0.78
LSM1-205ENST00000523511 MAP3K9P80192 1104 aa19.95■□□□□ 0.78
LSM1-205ENST00000523511 SPRYD7Q5W111 196 aa19.95■□□□□ 0.78
LSM1-205ENST00000523511 CDC42EP5Q6NZY7 148 aa19.95■□□□□ 0.78
LSM1-205ENST00000523511 CLASRPQ8N2M8 674 aaKnown RBP19.95■□□□□ 0.78
LSM1-205ENST00000523511 TEPSINQ96N21 525 aa19.95■□□□□ 0.78
LSM1-205ENST00000523511 ZIC5Q96T25 663 aa19.95■□□□□ 0.78
LSM1-205ENST00000523511 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.95■□□□□ 0.78
LSM1-205ENST00000523511 ALDH1A1P00352 501 aa19.94■□□□□ 0.78
LSM1-205ENST00000523511 OTUD7BQ6GQQ9 843 aa19.94■□□□□ 0.78
LSM1-205ENST00000523511 KIF1BPQ96EK5 621 aa19.94■□□□□ 0.78
LSM1-205ENST00000523511 DBNDD2Q9BQY9 259 aa19.94■□□□□ 0.78
LSM1-205ENST00000523511 RNF186Q9NXI6 227 aa19.94■□□□□ 0.78
LSM1-205ENST00000523511 EXOC6BQ9Y2D4 811 aa19.94■□□□□ 0.78
LSM1-205ENST00000523511 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP19.94■□□□□ 0.78
LSM1-205ENST00000523511 PCNTO95613 3336 aa19.94■□□□□ 0.78
LSM1-205ENST00000523511 MECOMQ03112 1051 aa19.93■□□□□ 0.78
LSM1-205ENST00000523511 CCDC8Q9H0W5 538 aaPredicted RBP19.93■□□□□ 0.78
LSM1-205ENST00000523511 THSD7BQ9C0I4 1608 aa19.92■□□□□ 0.78
LSM1-205ENST00000523511 ENTPD3O75355 529 aa19.92■□□□□ 0.78
LSM1-205ENST00000523511 BAG3O95817 575 aa19.92■□□□□ 0.78
LSM1-205ENST00000523511 MCAMP43121 646 aa19.92■□□□□ 0.78
LSM1-205ENST00000523511 TCP10Q12799 353 aa19.92■□□□□ 0.78
LSM1-205ENST00000523511 MKRN3Q13064 507 aaKnown RBP19.92■□□□□ 0.78
LSM1-205ENST00000523511 RHPN1Q8TCX5 695 aa19.92■□□□□ 0.78
LSM1-205ENST00000523511 IDI2Q9BXS1 227 aa19.92■□□□□ 0.78
LSM1-205ENST00000523511 MROH7-TTC4A0A0A0MT08 1334 aa19.92■□□□□ 0.78
LSM1-205ENST00000523511 GAKO14976 1311 aa19.92■□□□□ 0.78
LSM1-205ENST00000523511 GPR75-ASB3A0A0A6YYF3 556 aa19.91■□□□□ 0.78
LSM1-205ENST00000523511 IFIT2P09913 472 aaKnown RBP19.91■□□□□ 0.78
LSM1-205ENST00000523511 BTDP43251 543 aa19.91■□□□□ 0.78
LSM1-205ENST00000523511 TMED8Q6PL24 325 aaPredicted RBP19.91■□□□□ 0.78
LSM1-205ENST00000523511 AACSQ86V21 672 aa19.91■□□□□ 0.78
LSM1-205ENST00000523511 EAF2Q96CJ1 260 aaPredicted RBP19.91■□□□□ 0.78
LSM1-205ENST00000523511 WNK4Q96J92 1243 aa19.91■□□□□ 0.78
LSM1-205ENST00000523511 YTHDC1Q96MU7 727 aaKnown RBP19.91■□□□□ 0.78
LSM1-205ENST00000523511 ZNF341Q9BYN7 854 aa19.91■□□□□ 0.78
LSM1-205ENST00000523511 TSKSQ9UJT2 592 aa19.91■□□□□ 0.78
LSM1-205ENST00000523511 FZD1Q9UP38 647 aa19.91■□□□□ 0.78
LSM1-205ENST00000523511 PLCG2P16885 1265 aa19.9■□□□□ 0.78
LSM1-205ENST00000523511 TBC1D9Q6ZT07 1266 aa19.9■□□□□ 0.78
LSM1-205ENST00000523511 ZSCAN29Q8IWY8 852 aaPredicted RBP19.9■□□□□ 0.78
LSM1-205ENST00000523511 NSUN4Q96CB9 384 aaKnown RBP19.9■□□□□ 0.78
LSM1-205ENST00000523511 SNRKQ9NRH2 765 aa19.9■□□□□ 0.78
LSM1-205ENST00000523511 DBNLQ9UJU6 430 aaKnown RBP19.9■□□□□ 0.78
LSM1-205ENST00000523511 RPAP1Q9BWH6 1393 aaPredicted RBP19.9■□□□□ 0.78
LSM1-205ENST00000523511 WDHD1O75717 1129 aaPredicted RBP19.89■□□□□ 0.77
LSM1-205ENST00000523511 NAA16Q6N069 864 aaPredicted RBP19.89■□□□□ 0.77
LSM1-205ENST00000523511 DDX55Q8NHQ9 600 aaKnown RBP eCLIP19.89■□□□□ 0.77
LSM1-205ENST00000523511 ARAP2Q8WZ64 1704 aa19.89■□□□□ 0.77
LSM1-205ENST00000523511 CLMNQ96JQ2 1002 aa19.89■□□□□ 0.77
LSM1-205ENST00000523511 ELP3Q9H9T3 547 aa19.89■□□□□ 0.77
LSM1-205ENST00000523511 APBB1O00213 710 aa19.88■□□□□ 0.77
LSM1-205ENST00000523511 NPM3O75607 178 aaKnown RBP19.88■□□□□ 0.77
LSM1-205ENST00000523511 C20orf194Q5TEA3 1177 aa19.88■□□□□ 0.77
LSM1-205ENST00000523511 PI16Q6UXB8 463 aa19.88■□□□□ 0.77
LSM1-205ENST00000523511 CERS3Q8IU89 383 aa19.88■□□□□ 0.77
LSM1-205ENST00000523511 OPTNQ96CV9 577 aa19.88■□□□□ 0.77
LSM1-205ENST00000523511 WRNIP1Q96S55 665 aa19.88■□□□□ 0.77
LSM1-205ENST00000523511 RGS3P49796 1198 aa19.87■□□□□ 0.77
LSM1-205ENST00000523511 GTF2A2P52657 109 aa19.87■□□□□ 0.77
LSM1-205ENST00000523511 NFIAQ12857 509 aa19.87■□□□□ 0.77
LSM1-205ENST00000523511 TTF1Q15361 905 aaPredicted RBP19.87■□□□□ 0.77
LSM1-205ENST00000523511 PPP1R3FQ6ZSY5 799 aaPredicted RBP19.87■□□□□ 0.77
LSM1-205ENST00000523511 MIGA2Q7L4E1 593 aa19.87■□□□□ 0.77
LSM1-205ENST00000523511 IL1RAPL2Q9NP60 686 aa19.87■□□□□ 0.77
LSM1-205ENST00000523511 FAM198AQ9UFP1 575 aa19.87■□□□□ 0.77
LSM1-205ENST00000523511 SSC5DA1L4H1 1573 aa19.87■□□□□ 0.77
LSM1-205ENST00000523511 CYP2E1P05181 493 aaPredicted RBP19.86■□□□□ 0.77
LSM1-205ENST00000523511 ZAP70P43403 619 aa19.86■□□□□ 0.77
LSM1-205ENST00000523511 MAP3K12Q12852 859 aa19.86■□□□□ 0.77
LSM1-205ENST00000523511 VGLL4Q14135 290 aa19.86■□□□□ 0.77
LSM1-205ENST00000523511 ERO1BQ86YB8 467 aa19.86■□□□□ 0.77
LSM1-205ENST00000523511 ECM29Q5VYK3 1845 aa19.86■□□□□ 0.77
LSM1-205ENST00000523511 PICALMQ13492 652 aa19.85■□□□□ 0.77
LSM1-205ENST00000523511 IFNL1Q8IU54 200 aa19.85■□□□□ 0.77
LSM1-205ENST00000523511 CDAN1Q8IWY9 1227 aa19.85■□□□□ 0.77
LSM1-205ENST00000523511 SIRT2Q8IXJ6 389 aa19.85■□□□□ 0.77
LSM1-205ENST00000523511 NOM1Q5C9Z4 860 aaKnown RBP19.84■□□□□ 0.77
LSM1-205ENST00000523511 TEX11Q8IYF3 940 aa19.84■□□□□ 0.77
LSM1-205ENST00000523511 CFHR5Q9BXR6 569 aa19.84■□□□□ 0.77
LSM1-205ENST00000523511 LRRCC1Q9C099 1032 aa19.84■□□□□ 0.77
LSM1-205ENST00000523511 BCL11AQ9H165 835 aa19.84■□□□□ 0.77
LSM1-205ENST00000523511 TLR7Q9NYK1 1049 aaKnown RBP19.84■□□□□ 0.77
LSM1-205ENST00000523511 SPDYE5A6NIY4 337 aa19.83■□□□□ 0.77
LSM1-205ENST00000523511 IDH1O75874 414 aaKnown RBP19.83■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms