RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 POTEJP0CG39 1038 aa14.36□□□□□ -0.11
USP53-209ENST00000514665 TTLL7Q6ZT98 887 aa14.36□□□□□ -0.11
USP53-209ENST00000514665 C6orf50Q9HD87 102 aa14.36□□□□□ -0.11
USP53-209ENST00000514665 FSD2A1L4K1 749 aa14.36□□□□□ -0.11
USP53-209ENST00000514665 KRT86O43790 486 aa14.36□□□□□ -0.11
USP53-209ENST00000514665 CHMP4BP1P59074 171 aa14.36□□□□□ -0.11
USP53-209ENST00000514665 IGSF22Q8N9C0 903 aa14.36□□□□□ -0.11
USP53-209ENST00000514665 METP08581 1390 aa14.36□□□□□ -0.11
USP53-209ENST00000514665 ARHGEF5Q12774 1597 aa14.36□□□□□ -0.11
USP53-209ENST00000514665 TACC1O75410 805 aa14.36□□□□□ -0.11
USP53-209ENST00000514665 CKAP4Q07065 602 aaKnown RBP14.36□□□□□ -0.11
USP53-209ENST00000514665 PUM3Q15397 648 aaKnown RBP14.36□□□□□ -0.11
USP53-209ENST00000514665 CCDC24Q8N4L8 307 aa14.36□□□□□ -0.11
USP53-209ENST00000514665 TMEM2Q9UHN6 1383 aa14.36□□□□□ -0.11
USP53-209ENST00000514665 ADGBQ8N7X0 1667 aa14.36□□□□□ -0.11
USP53-209ENST00000514665 AKR1B15C9JRZ8 316 aaPredicted RBP14.36□□□□□ -0.11
USP53-209ENST00000514665 LETM2Q2VYF4 491 aa14.36□□□□□ -0.11
USP53-209ENST00000514665 KRT79Q5XKE5 535 aa14.36□□□□□ -0.11
USP53-209ENST00000514665 CARD6Q9BX69 1037 aa14.36□□□□□ -0.11
USP53-209ENST00000514665 STAP2Q9UGK3 403 aa14.36□□□□□ -0.11
USP53-209ENST00000514665 ZNF532Q9HCE3 1301 aa14.35□□□□□ -0.11
USP53-209ENST00000514665 DEXIO95424 95 aa14.35□□□□□ -0.11
USP53-209ENST00000514665 TUBB4AP04350 444 aa14.35□□□□□ -0.11
USP53-209ENST00000514665 ADD1P35611 737 aaKnown RBP14.35□□□□□ -0.11
USP53-209ENST00000514665 TRMT44Q8IYL2 757 aaKnown RBP14.35□□□□□ -0.11
USP53-209ENST00000514665 CEP112Q8N8E3 955 aa14.35□□□□□ -0.11
USP53-209ENST00000514665 LRRC27Q9C0I9 530 aa14.35□□□□□ -0.11
USP53-209ENST00000514665 TLR7Q9NYK1 1049 aaKnown RBP14.35□□□□□ -0.11
USP53-209ENST00000514665 ZNF853P0CG23 659 aa14.35□□□□□ -0.11
USP53-209ENST00000514665 MAP2K1Q02750 393 aaPredicted RBP14.35□□□□□ -0.11
USP53-209ENST00000514665 ERO1AQ96HE7 468 aa14.35□□□□□ -0.11
USP53-209ENST00000514665 ELF2Q15723 593 aa14.35□□□□□ -0.11
USP53-209ENST00000514665 WDR78Q5VTH9 848 aa14.35□□□□□ -0.11
USP53-209ENST00000514665 MYSM1Q5VVJ2 828 aa14.35□□□□□ -0.11
USP53-209ENST00000514665 PIK3AP1Q6ZUJ8 805 aa14.35□□□□□ -0.11
USP53-209ENST00000514665 TIGD1Q96MW7 591 aa14.35□□□□□ -0.11
USP53-209ENST00000514665 LSG1Q9H089 658 aaKnown RBP14.35□□□□□ -0.11
USP53-209ENST00000514665 YEATS2Q9ULM3 1422 aa14.35□□□□□ -0.11
USP53-209ENST00000514665 CAPN2P17655 700 aa14.34□□□□□ -0.11
USP53-209ENST00000514665 XPO4Q9C0E2 1151 aaKnown RBP14.34□□□□□ -0.11
USP53-209ENST00000514665 OSBPL3Q9H4L5 887 aa14.34□□□□□ -0.11
USP53-209ENST00000514665 RSPH14Q9UHP6 348 aa14.34□□□□□ -0.11
USP53-209ENST00000514665 LDHBP07195 334 aaKnown RBP14.34□□□□□ -0.11
USP53-209ENST00000514665 KRT83P78385 493 aa14.34□□□□□ -0.11
USP53-209ENST00000514665 GPIHBP1Q8IV16 184 aa14.34□□□□□ -0.11
USP53-209ENST00000514665 PRAMEF22A3QJZ6 481 aa14.34□□□□□ -0.11
USP53-209ENST00000514665 PDE8AO60658 829 aa14.34□□□□□ -0.11
USP53-209ENST00000514665 PPP2R3AQ06190 1150 aa14.34□□□□□ -0.11
USP53-209ENST00000514665 CNGA4Q8IV77 575 aa14.34□□□□□ -0.11
USP53-209ENST00000514665 PLXNC1O60486 1568 aa14.34□□□□□ -0.11
USP53-209ENST00000514665 LRRC24Q50LG9 513 aa14.33□□□□□ -0.11
USP53-209ENST00000514665 CUTAO60888 179 aa14.33□□□□□ -0.12
USP53-209ENST00000514665 DNAJC21Q5F1R6 531 aaKnown RBP14.33□□□□□ -0.12
USP53-209ENST00000514665 CCDC122Q5T0U0 273 aa14.33□□□□□ -0.12
USP53-209ENST00000514665 CMTR1Q8N1G2 835 aaKnown RBP14.33□□□□□ -0.12
USP53-209ENST00000514665 ERMNQ8TAM6 284 aa14.33□□□□□ -0.12
USP53-209ENST00000514665 HSPD1P10809 573 aaKnown RBP14.33□□□□□ -0.12
USP53-209ENST00000514665 TBC1D8BQ0IIM8 1120 aa14.33□□□□□ -0.12
USP53-209ENST00000514665 RRP36Q96EU6 259 aaKnown RBP14.33□□□□□ -0.12
USP53-209ENST00000514665 SAP30BPQ9UHR5 308 aaKnown RBP14.33□□□□□ -0.12
USP53-209ENST00000514665 DBNLQ9UJU6 430 aaKnown RBP14.33□□□□□ -0.12
USP53-209ENST00000514665 SSH2Q76I76 1423 aa14.33□□□□□ -0.12
USP53-209ENST00000514665 ERCC3P19447 782 aa14.33□□□□□ -0.12
USP53-209ENST00000514665 DSCC1Q9BVC3 393 aa14.33□□□□□ -0.12
USP53-209ENST00000514665 ZC3H12CQ9C0D7 883 aaKnown RBP14.33□□□□□ -0.12
USP53-209ENST00000514665 VPS18Q9P253 973 aa14.33□□□□□ -0.12
USP53-209ENST00000514665 CTNND2Q9UQB3 1225 aa14.33□□□□□ -0.12
USP53-209ENST00000514665 ATP2C2O75185 946 aa14.32□□□□□ -0.12
USP53-209ENST00000514665 SAMD9LQ8IVG5 1584 aa14.32□□□□□ -0.12
USP53-209ENST00000514665 GNA11P29992 359 aa14.32□□□□□ -0.12
USP53-209ENST00000514665 GBP2P32456 591 aaPredicted RBP14.32□□□□□ -0.12
USP53-209ENST00000514665 LPIN2Q92539 896 aa14.32□□□□□ -0.12
USP53-209ENST00000514665 MAP4K1Q92918 833 aa14.32□□□□□ -0.12
USP53-209ENST00000514665 C8orf37Q96NL8 207 aa14.32□□□□□ -0.12
USP53-209ENST00000514665 OGFRQ9NZT2 677 aa14.32□□□□□ -0.12
USP53-209ENST00000514665 RIMBP2O15034 1052 aa14.32□□□□□ -0.12
USP53-209ENST00000514665 HSF2BPO75031 334 aa14.32□□□□□ -0.12
USP53-209ENST00000514665 NLRP12P59046 1061 aa14.32□□□□□ -0.12
USP53-209ENST00000514665 ST5P78524 1137 aa14.32□□□□□ -0.12
USP53-209ENST00000514665 MTX1Q13505 466 aa14.32□□□□□ -0.12
USP53-209ENST00000514665 LONRF3Q496Y0 759 aa14.32□□□□□ -0.12
USP53-209ENST00000514665 TFCP2L1Q9NZI6 479 aa14.32□□□□□ -0.12
USP53-209ENST00000514665 A0A087WWV3 80 aa14.31□□□□□ -0.12
USP53-209ENST00000514665 RGS12O14924 1447 aa14.31□□□□□ -0.12
USP53-209ENST00000514665 STXBP4Q6ZWJ1 553 aa14.31□□□□□ -0.12
USP53-209ENST00000514665 ZNF804AQ7Z570 1209 aa14.31□□□□□ -0.12
USP53-209ENST00000514665 PRR36Q9H6K5 1346 aa14.31□□□□□ -0.12
USP53-209ENST00000514665 VPS54Q9P1Q0 977 aa14.31□□□□□ -0.12
USP53-209ENST00000514665 KIAA1468Q9P260 1216 aa14.31□□□□□ -0.12
USP53-209ENST00000514665 BCL2L12Q9HB09 334 aa14.31□□□□□ -0.12
USP53-209ENST00000514665 FGAP02671 866 aa14.31□□□□□ -0.12
USP53-209ENST00000514665 TCIRG1Q13488 830 aa14.31□□□□□ -0.12
USP53-209ENST00000514665 PNOCQ13519 176 aa14.31□□□□□ -0.12
USP53-209ENST00000514665 KIAA0753Q2KHM9 967 aa14.31□□□□□ -0.12
USP53-209ENST00000514665 MLKLQ8NB16 471 aa14.31□□□□□ -0.12
USP53-209ENST00000514665 NEK11Q8NG66 645 aa14.31□□□□□ -0.12
USP53-209ENST00000514665 ATRIPQ8WXE1 791 aa14.31□□□□□ -0.12
USP53-209ENST00000514665 AATFQ9NY61 560 aaKnown RBP eCLIP14.31□□□□□ -0.12
USP53-209ENST00000514665 WWC3Q9ULE0 1092 aa14.31□□□□□ -0.12
USP53-209ENST00000514665 PHKG2P15735 406 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms