RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 DYNLL1P63167 89 aaKnown RBP9.51□□□□□ -0.89
LIMCH1-219ENST00000514096 STRIP1Q5VSL9 837 aa9.51□□□□□ -0.89
LIMCH1-219ENST00000514096 MAGEB6Q8N7X4 407 aa9.51□□□□□ -0.89
LIMCH1-219ENST00000514096 DBNLQ9UJU6 430 aaKnown RBP9.51□□□□□ -0.89
LIMCH1-219ENST00000514096 TNNT1P13805 278 aa9.5□□□□□ -0.89
LIMCH1-219ENST00000514096 ZKSCAN4Q969J2 545 aaPredicted RBP9.5□□□□□ -0.89
LIMCH1-219ENST00000514096 PLA2G12BQ9BX93 195 aa9.5□□□□□ -0.89
LIMCH1-219ENST00000514096 AKAP2Q9Y2D5 859 aa9.5□□□□□ -0.89
LIMCH1-219ENST00000514096 VEGFBP49765 207 aa9.5□□□□□ -0.89
LIMCH1-219ENST00000514096 SIRT2Q8IXJ6 389 aa9.5□□□□□ -0.89
LIMCH1-219ENST00000514096 ARHGAP45Q92619 1136 aa9.5□□□□□ -0.89
LIMCH1-219ENST00000514096 ELP3Q9H9T3 547 aa9.5□□□□□ -0.89
LIMCH1-219ENST00000514096 GBA2Q9HCG7 927 aaPredicted RBP9.5□□□□□ -0.89
LIMCH1-219ENST00000514096 VIL1P09327 827 aaKnown RBP9.49□□□□□ -0.89
LIMCH1-219ENST00000514096 MCAMP43121 646 aa9.49□□□□□ -0.89
LIMCH1-219ENST00000514096 ZFPM1Q8IX07 1006 aa9.49□□□□□ -0.89
LIMCH1-219ENST00000514096 SPATA5Q8NB90 893 aa9.49□□□□□ -0.89
LIMCH1-219ENST00000514096 TGFBRAP1Q8WUH2 860 aa9.49□□□□□ -0.89
LIMCH1-219ENST00000514096 CDCA5Q96FF9 252 aa9.49□□□□□ -0.89
LIMCH1-219ENST00000514096 OTUD5Q96G74 571 aa9.49□□□□□ -0.89
LIMCH1-219ENST00000514096 HMG20BQ9P0W2 317 aa9.49□□□□□ -0.89
LIMCH1-219ENST00000514096 AK9Q5TCS8 1911 aa9.49□□□□□ -0.89
LIMCH1-219ENST00000514096 MPHOSPH10O00566 681 aaKnown RBP9.49□□□□□ -0.89
LIMCH1-219ENST00000514096 USP5P45974 858 aa9.49□□□□□ -0.89
LIMCH1-219ENST00000514096 RABL6Q3YEC7 729 aaPredicted RBP9.49□□□□□ -0.89
LIMCH1-219ENST00000514096 CST9Q5W186 159 aa9.49□□□□□ -0.89
LIMCH1-219ENST00000514096 NAA16Q6N069 864 aaPredicted RBP9.49□□□□□ -0.89
LIMCH1-219ENST00000514096 CAPNS2Q96L46 248 aa9.49□□□□□ -0.89
LIMCH1-219ENST00000514096 SCN7AQ01118 1682 aa9.49□□□□□ -0.89
LIMCH1-219ENST00000514096 WDR78Q5VTH9 848 aa9.49□□□□□ -0.89
LIMCH1-219ENST00000514096 ARFGEF2Q9Y6D5 1785 aa9.49□□□□□ -0.89
LIMCH1-219ENST00000514096 BTDP43251 543 aa9.48□□□□□ -0.89
LIMCH1-219ENST00000514096 SLC9C2Q5TAH2 1124 aa9.48□□□□□ -0.89
LIMCH1-219ENST00000514096 CRACR2BQ8N4Y2 399 aaPredicted RBP9.48□□□□□ -0.89
LIMCH1-219ENST00000514096 LRRCC1Q9C099 1032 aa9.48□□□□□ -0.89
LIMCH1-219ENST00000514096 PALD1Q9ULE6 856 aa9.48□□□□□ -0.89
LIMCH1-219ENST00000514096 SDR42E1Q8WUS8 393 aa9.48□□□□□ -0.89
LIMCH1-219ENST00000514096 RTFDC1Q9BY42 306 aaPredicted RBP9.48□□□□□ -0.89
LIMCH1-219ENST00000514096 ZBTB40Q9NUA8 1239 aa9.48□□□□□ -0.89
LIMCH1-219ENST00000514096 MINDY4BA8MYZ0 360 aa9.48□□□□□ -0.89
LIMCH1-219ENST00000514096 MECOMQ03112 1051 aa9.48□□□□□ -0.89
LIMCH1-219ENST00000514096 RBM46Q8TBY0 533 aaKnown RBP9.48□□□□□ -0.89
LIMCH1-219ENST00000514096 SLC10A4Q96EP9 437 aa9.48□□□□□ -0.89
LIMCH1-219ENST00000514096 COPRSQ9NQ92 184 aa9.48□□□□□ -0.89
LIMCH1-219ENST00000514096 LAMB4A4D0S4 1761 aa9.48□□□□□ -0.89
LIMCH1-219ENST00000514096 PPP1R12BO60237 982 aaPredicted RBP9.47□□□□□ -0.89
LIMCH1-219ENST00000514096 ITGBL1O95965 494 aaPredicted RBP9.47□□□□□ -0.89
LIMCH1-219ENST00000514096 USP50Q70EL3 339 aaPredicted RBP9.47□□□□□ -0.89
LIMCH1-219ENST00000514096 TEX11Q8IYF3 940 aa9.47□□□□□ -0.89
LIMCH1-219ENST00000514096 AIDAQ96BJ3 306 aa9.47□□□□□ -0.89
LIMCH1-219ENST00000514096 WRNIP1Q96S55 665 aa9.47□□□□□ -0.89
LIMCH1-219ENST00000514096 GZF1Q9H116 711 aaPredicted RBP9.47□□□□□ -0.89
LIMCH1-219ENST00000514096 LTBP3Q9NS15 1303 aa9.47□□□□□ -0.89
LIMCH1-219ENST00000514096 CLGNO14967 610 aa9.47□□□□□ -0.89
LIMCH1-219ENST00000514096 HSPA1AP0DMV8 641 aaKnown RBP9.47□□□□□ -0.89
LIMCH1-219ENST00000514096 HSPA1BP0DMV9 641 aaKnown RBP9.47□□□□□ -0.89
LIMCH1-219ENST00000514096 TDRD7Q8NHU6 1098 aaKnown RBP9.47□□□□□ -0.89
LIMCH1-219ENST00000514096 CSRNP1Q96S65 589 aa9.47□□□□□ -0.89
LIMCH1-219ENST00000514096 POLR2AP24928 1970 aaKnown RBP9.47□□□□□ -0.89
LIMCH1-219ENST00000514096 GDF11O95390 407 aa9.47□□□□□ -0.89
LIMCH1-219ENST00000514096 FSD1Q9BTV5 496 aa9.47□□□□□ -0.89
LIMCH1-219ENST00000514096 PIH1D3Q9NQM4 214 aaKnown RBP9.47□□□□□ -0.89
LIMCH1-219ENST00000514096 ZNF70Q9UC06 446 aaPredicted RBP9.47□□□□□ -0.89
LIMCH1-219ENST00000514096 CYP2D7A0A087X1C5 515 aa9.46□□□□□ -0.89
LIMCH1-219ENST00000514096 TRIM75PA6NK02 468 aa9.46□□□□□ -0.89
LIMCH1-219ENST00000514096 TBC1D8O95759 1140 aa9.46□□□□□ -0.89
LIMCH1-219ENST00000514096 IGHDP01880 384 aa9.46□□□□□ -0.89
LIMCH1-219ENST00000514096 LBX1P52954 281 aa9.46□□□□□ -0.89
LIMCH1-219ENST00000514096 DGKZQ13574 1117 aa9.46□□□□□ -0.89
LIMCH1-219ENST00000514096 NFKBIBQ15653 356 aa9.46□□□□□ -0.89
LIMCH1-219ENST00000514096 WDR66Q8TBY9 1149 aa9.46□□□□□ -0.89
LIMCH1-219ENST00000514096 KIF1BPQ96EK5 621 aa9.46□□□□□ -0.89
LIMCH1-219ENST00000514096 TMEM51Q9NW97 253 aa9.46□□□□□ -0.89
LIMCH1-219ENST00000514096 DENND2AQ9ULE3 1009 aa9.46□□□□□ -0.89
LIMCH1-219ENST00000514096 MED23Q9ULK4 1368 aa9.46□□□□□ -0.89
LIMCH1-219ENST00000514096 INPP5BP32019 993 aa9.46□□□□□ -0.9
LIMCH1-219ENST00000514096 RRP12Q5JTH9 1297 aaKnown RBP9.46□□□□□ -0.9
LIMCH1-219ENST00000514096 RGS22Q8NE09 1264 aa9.46□□□□□ -0.9
LIMCH1-219ENST00000514096 AGBL3Q8NEM8 1001 aa9.46□□□□□ -0.9
LIMCH1-219ENST00000514096 ARMT1Q9H993 441 aa9.46□□□□□ -0.9
LIMCH1-219ENST00000514096 DAGLAQ9Y4D2 1042 aa9.46□□□□□ -0.9
LIMCH1-219ENST00000514096 SPEF2Q9C093 1822 aa9.46□□□□□ -0.9
LIMCH1-219ENST00000514096 IBTKQ9P2D0 1353 aaPredicted RBP9.46□□□□□ -0.9
LIMCH1-219ENST00000514096 SPDYE2BA6NHP3 402 aa9.45□□□□□ -0.9
LIMCH1-219ENST00000514096 RGL2O15211 777 aa9.45□□□□□ -0.9
LIMCH1-219ENST00000514096 PRDM1O75626 825 aa9.45□□□□□ -0.9
LIMCH1-219ENST00000514096 POLR3DP05423 398 aaPredicted RBP9.45□□□□□ -0.9
LIMCH1-219ENST00000514096 SPDYE6P0CI01 402 aa9.45□□□□□ -0.9
LIMCH1-219ENST00000514096 EVX2Q03828 476 aa9.45□□□□□ -0.9
LIMCH1-219ENST00000514096 SHROOM1Q2M3G4 852 aaPredicted RBP9.45□□□□□ -0.9
LIMCH1-219ENST00000514096 FBXO33Q7Z6M2 555 aa9.45□□□□□ -0.9
LIMCH1-219ENST00000514096 SSH3Q8TE77 659 aa9.45□□□□□ -0.9
LIMCH1-219ENST00000514096 DPF2Q92785 391 aa9.45□□□□□ -0.9
LIMCH1-219ENST00000514096 SMIM22K7EJ46 135 aa9.45□□□□□ -0.9
LIMCH1-219ENST00000514096 CYP2E1P05181 493 aaPredicted RBP9.45□□□□□ -0.9
LIMCH1-219ENST00000514096 RAB3GAP1Q15042 981 aa9.45□□□□□ -0.9
LIMCH1-219ENST00000514096 CCDC129Q6ZRS4 1044 aa9.45□□□□□ -0.9
LIMCH1-219ENST00000514096 SEC62Q99442 399 aaKnown RBP9.45□□□□□ -0.9
LIMCH1-219ENST00000514096 PRKAB2O43741 272 aa9.45□□□□□ -0.9
LIMCH1-219ENST00000514096 PEX10O60683 326 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms