RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 MYO1CO00159 1063 aa12.72□□□□□ -0.37
TCOF1-211ENST00000513346 FAM182BQ5T319 152 aa12.72□□□□□ -0.37
TCOF1-211ENST00000513346 SPTY2D1Q68D10 685 aaPredicted RBP12.72□□□□□ -0.37
TCOF1-211ENST00000513346 FAM114A1Q8IWE2 563 aa12.72□□□□□ -0.37
TCOF1-211ENST00000513346 ANKS4BQ8N8V4 417 aa12.72□□□□□ -0.37
TCOF1-211ENST00000513346 CLASP1Q7Z460 1538 aa12.72□□□□□ -0.37
TCOF1-211ENST00000513346 METP08581 1390 aa12.71□□□□□ -0.37
TCOF1-211ENST00000513346 SEC31AO94979 1220 aaKnown RBP12.71□□□□□ -0.37
TCOF1-211ENST00000513346 IL15P40933 162 aaPredicted RBP12.71□□□□□ -0.37
TCOF1-211ENST00000513346 CLNS1AP54105 237 aaKnown RBP12.71□□□□□ -0.37
TCOF1-211ENST00000513346 NAA16Q6N069 864 aaPredicted RBP12.71□□□□□ -0.37
TCOF1-211ENST00000513346 DZIP3Q86Y13 1208 aaKnown RBP12.71□□□□□ -0.37
TCOF1-211ENST00000513346 IGSF22Q8N9C0 903 aa12.71□□□□□ -0.37
TCOF1-211ENST00000513346 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.71□□□□□ -0.37
TCOF1-211ENST00000513346 MYO1BO43795 1136 aa12.71□□□□□ -0.37
TCOF1-211ENST00000513346 CATIPQ7Z7H3 387 aa12.71□□□□□ -0.37
TCOF1-211ENST00000513346 CCDC50Q8IVM0 306 aa12.71□□□□□ -0.37
TCOF1-211ENST00000513346 FAM71BQ8TC56 605 aa12.71□□□□□ -0.37
TCOF1-211ENST00000513346 SLC26A6Q9BXS9 759 aa12.71□□□□□ -0.37
TCOF1-211ENST00000513346 MED4Q9NPJ6 270 aa12.71□□□□□ -0.37
TCOF1-211ENST00000513346 DDX21Q9NR30 783 aaKnown RBP eCLIP12.71□□□□□ -0.37
TCOF1-211ENST00000513346 RMND1Q9NWS8 449 aa12.71□□□□□ -0.37
TCOF1-211ENST00000513346 FAM135BQ49AJ0 1406 aa12.71□□□□□ -0.37
TCOF1-211ENST00000513346 ZNF202O95125 648 aa12.71□□□□□ -0.38
TCOF1-211ENST00000513346 GOLGA6BA6NDN3 693 aa12.71□□□□□ -0.38
TCOF1-211ENST00000513346 ICE2Q659A1 982 aa12.71□□□□□ -0.38
TCOF1-211ENST00000513346 CPLX4Q7Z7G2 160 aa12.71□□□□□ -0.38
TCOF1-211ENST00000513346 PDE11AQ9HCR9 933 aa12.71□□□□□ -0.38
TCOF1-211ENST00000513346 CCDC129Q6ZRS4 1044 aa12.7□□□□□ -0.38
TCOF1-211ENST00000513346 PLXNC1O60486 1568 aa12.7□□□□□ -0.38
TCOF1-211ENST00000513346 STX17P56962 302 aa12.7□□□□□ -0.38
TCOF1-211ENST00000513346 MTX1Q13505 466 aa12.7□□□□□ -0.38
TCOF1-211ENST00000513346 CCDC122Q5T0U0 273 aa12.7□□□□□ -0.38
TCOF1-211ENST00000513346 EFCAB13Q8IY85 973 aa12.7□□□□□ -0.38
TCOF1-211ENST00000513346 CCDC144CPQ8IYA2 1237 aa12.7□□□□□ -0.38
TCOF1-211ENST00000513346 ANKRD7Q92527 254 aa12.7□□□□□ -0.38
TCOF1-211ENST00000513346 TRIM47Q96LD4 638 aa12.7□□□□□ -0.38
TCOF1-211ENST00000513346 OSBPL3Q9H4L5 887 aa12.7□□□□□ -0.38
TCOF1-211ENST00000513346 KIAA1468Q9P260 1216 aa12.7□□□□□ -0.38
TCOF1-211ENST00000513346 IQSEC3Q9UPP2 1182 aaPredicted RBP12.7□□□□□ -0.38
TCOF1-211ENST00000513346 PPP2R2CQ9Y2T4 447 aa12.7□□□□□ -0.38
TCOF1-211ENST00000513346 TSPY2A6NKD2 308 aa12.7□□□□□ -0.38
TCOF1-211ENST00000513346 PPFIA1Q13136 1202 aa12.7□□□□□ -0.38
TCOF1-211ENST00000513346 KMT5BQ4FZB7 885 aa12.7□□□□□ -0.38
TCOF1-211ENST00000513346 PRDM15P57071 1507 aaPredicted RBP12.7□□□□□ -0.38
TCOF1-211ENST00000513346 MYOM2P54296 1465 aa12.7□□□□□ -0.38
TCOF1-211ENST00000513346 ZFYP08048 801 aaPredicted RBP12.69□□□□□ -0.38
TCOF1-211ENST00000513346 PDE4BQ07343 736 aa12.69□□□□□ -0.38
TCOF1-211ENST00000513346 TMEM67Q5HYA8 995 aa12.69□□□□□ -0.38
TCOF1-211ENST00000513346 MFSD6Q6ZSS7 791 aa12.69□□□□□ -0.38
TCOF1-211ENST00000513346 NSRP1Q9H0G5 558 aaKnown RBP12.69□□□□□ -0.38
TCOF1-211ENST00000513346 PNMA6EA0A0J9YXQ4 647 aa12.69□□□□□ -0.38
TCOF1-211ENST00000513346 LIG3P49916 1009 aa12.69□□□□□ -0.38
TCOF1-211ENST00000513346 RAD51AP2Q09MP3 1159 aa12.69□□□□□ -0.38
TCOF1-211ENST00000513346 LONRF2Q1L5Z9 754 aa12.69□□□□□ -0.38
TCOF1-211ENST00000513346 VPS36Q86VN1 386 aa12.69□□□□□ -0.38
TCOF1-211ENST00000513346 RABEP2Q9H5N1 569 aa12.69□□□□□ -0.38
TCOF1-211ENST00000513346 LUC7L2Q9Y383 392 aaKnown RBP12.69□□□□□ -0.38
TCOF1-211ENST00000513346 PHLPP2Q6ZVD8 1323 aa12.69□□□□□ -0.38
TCOF1-211ENST00000513346 CDC42BPAQ5VT25 1732 aa12.69□□□□□ -0.38
TCOF1-211ENST00000513346 CCDC172P0C7W6 258 aa12.69□□□□□ -0.38
TCOF1-211ENST00000513346 NAA30Q147X3 362 aaPredicted RBP12.69□□□□□ -0.38
TCOF1-211ENST00000513346 ANO1Q5XXA6 986 aa12.69□□□□□ -0.38
TCOF1-211ENST00000513346 BMP15O95972 392 aa12.69□□□□□ -0.38
TCOF1-211ENST00000513346 ZNF790Q6PG37 636 aa12.69□□□□□ -0.38
TCOF1-211ENST00000513346 TSG101Q99816 390 aa12.69□□□□□ -0.38
TCOF1-211ENST00000513346 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.69□□□□□ -0.38
TCOF1-211ENST00000513346 ZDHHC9Q9Y397 364 aa12.69□□□□□ -0.38
TCOF1-211ENST00000513346 A0A087WUV0 522 aaPredicted RBP12.68□□□□□ -0.38
TCOF1-211ENST00000513346 FCHSD1Q86WN1 690 aa12.68□□□□□ -0.38
TCOF1-211ENST00000513346 KIF2CQ99661 725 aa12.68□□□□□ -0.38
TCOF1-211ENST00000513346 RBM28Q9NW13 759 aaKnown RBP12.68□□□□□ -0.38
TCOF1-211ENST00000513346 CAPN7Q9Y6W3 813 aa12.68□□□□□ -0.38
TCOF1-211ENST00000513346 CCDC194A0A1B0GVG4 234 aa12.68□□□□□ -0.38
TCOF1-211ENST00000513346 TMCO5BA8MYB1 307 aa12.68□□□□□ -0.38
TCOF1-211ENST00000513346 ZBTB22O15209 634 aa12.68□□□□□ -0.38
TCOF1-211ENST00000513346 ZBTB43O43298 467 aa12.68□□□□□ -0.38
TCOF1-211ENST00000513346 JAK2O60674 1132 aa12.68□□□□□ -0.38
TCOF1-211ENST00000513346 CYP2E1P05181 493 aaPredicted RBP12.68□□□□□ -0.38
TCOF1-211ENST00000513346 TPTE2Q6XPS3 522 aa12.68□□□□□ -0.38
TCOF1-211ENST00000513346 TMTC1Q8IUR5 882 aa12.68□□□□□ -0.38
TCOF1-211ENST00000513346 FMNL3Q8IVF7 1028 aa12.68□□□□□ -0.38
TCOF1-211ENST00000513346 FBXO18Q8NFZ0 1043 aa12.68□□□□□ -0.38
TCOF1-211ENST00000513346 CCDC42Q96M95 316 aa12.68□□□□□ -0.38
TCOF1-211ENST00000513346 ZSWIM6Q9HCJ5 1215 aa12.68□□□□□ -0.38
TCOF1-211ENST00000513346 CPSF2Q9P2I0 782 aaKnown RBP12.68□□□□□ -0.38
TCOF1-211ENST00000513346 NLRP5P59047 1200 aa12.68□□□□□ -0.38
TCOF1-211ENST00000513346 BICC1Q9H694 974 aaKnown RBP12.68□□□□□ -0.38
TCOF1-211ENST00000513346 PARP3Q9Y6F1 533 aa12.68□□□□□ -0.38
TCOF1-211ENST00000513346 PRC1O43663 620 aa12.68□□□□□ -0.38
TCOF1-211ENST00000513346 WHAMMP3Q1A5X7 153 aa12.68□□□□□ -0.38
TCOF1-211ENST00000513346 MLKLQ8NB16 471 aa12.68□□□□□ -0.38
TCOF1-211ENST00000513346 DHX58Q96C10 678 aa12.68□□□□□ -0.38
TCOF1-211ENST00000513346 PLEKHF1Q96S99 279 aa12.68□□□□□ -0.38
TCOF1-211ENST00000513346 CRNKL1Q9BZJ0 848 aaKnown RBP12.68□□□□□ -0.38
TCOF1-211ENST00000513346 NYXQ9GZU5 481 aa12.68□□□□□ -0.38
TCOF1-211ENST00000513346 CCDC151A5D8V7 595 aa12.67□□□□□ -0.38
TCOF1-211ENST00000513346 ADALQ6DHV7 355 aa12.67□□□□□ -0.38
TCOF1-211ENST00000513346 CYP26C1Q6V0L0 522 aa12.67□□□□□ -0.38
TCOF1-211ENST00000513346 KRI1Q8N9T8 703 aaKnown RBP12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms