RNA–Protein interactions for RNA: ENST00000505937.2

PCDH1-205, Transcript of protocadherin 1, human

TSL 5

Gene PCDH1, Length 825 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PCDH1-205	ENST00000505937	FAM163A	Q96GL9	167 aa	Predicted RBP	18.91	■□□□□ 0.62
PCDH1-205	ENST00000505937	USP40	Q9NVE5	1235 aa		18.91	■□□□□ 0.62
PCDH1-205	ENST00000505937	ANGEL1	Q9UNK9	670 aa	Known RBP	18.91	■□□□□ 0.62
PCDH1-205	ENST00000505937	GAK	O14976	1311 aa		18.91	■□□□□ 0.62
PCDH1-205	ENST00000505937	HSPA1A	P0DMV8	641 aa	Known RBP	18.9	■□□□□ 0.62
PCDH1-205	ENST00000505937	HSPA1B	P0DMV9	641 aa	Known RBP	18.9	■□□□□ 0.62
PCDH1-205	ENST00000505937	IREB2	P48200	963 aa	Known RBP	18.9	■□□□□ 0.62
PCDH1-205	ENST00000505937	NBPF12	Q5TAG4	269 aa	Predicted RBP	18.9	■□□□□ 0.62
PCDH1-205	ENST00000505937	CDC42EP5	Q6NZY7	148 aa		18.9	■□□□□ 0.62
PCDH1-205	ENST00000505937	NOL10	Q9BSC4	688 aa	Known RBP	18.9	■□□□□ 0.62
PCDH1-205	ENST00000505937	TMEM39B	Q9GZU3	492 aa		18.9	■□□□□ 0.62
PCDH1-205	ENST00000505937	MROH7-TTC4	A0A0A0MT08	1334 aa		18.9	■□□□□ 0.62
PCDH1-205	ENST00000505937	ECM29	Q5VYK3	1845 aa		18.9	■□□□□ 0.62
PCDH1-205	ENST00000505937	ZAP70	P43403	619 aa		18.89	■□□□□ 0.61
PCDH1-205	ENST00000505937	MOB2	Q70IA6	237 aa		18.89	■□□□□ 0.61
PCDH1-205	ENST00000505937	NSUN4	Q96CB9	384 aa	Known RBP	18.89	■□□□□ 0.61
PCDH1-205	ENST00000505937	DCTPP1	Q9H773	170 aa		18.89	■□□□□ 0.61
PCDH1-205	ENST00000505937	UNCX	A6NJT0	531 aa		18.88	■□□□□ 0.61
PCDH1-205	ENST00000505937	AOC2	O75106	756 aa		18.88	■□□□□ 0.61
PCDH1-205	ENST00000505937	BTD	P43251	543 aa		18.88	■□□□□ 0.61
PCDH1-205	ENST00000505937	NAA16	Q6N069	864 aa	Predicted RBP	18.88	■□□□□ 0.61
PCDH1-205	ENST00000505937	PCDHB15	Q9Y5E8	787 aa		18.88	■□□□□ 0.61
PCDH1-205	ENST00000505937	MAP4K4	O95819	1239 aa	Predicted RBP	18.87	■□□□□ 0.61
PCDH1-205	ENST00000505937	CYP2E1	P05181	493 aa	Predicted RBP	18.87	■□□□□ 0.61
PCDH1-205	ENST00000505937	SLC10A3	P09131	477 aa		18.87	■□□□□ 0.61
PCDH1-205	ENST00000505937	TTF1	Q15361	905 aa	Predicted RBP	18.87	■□□□□ 0.61
PCDH1-205	ENST00000505937	MAP3K11	Q16584	847 aa		18.87	■□□□□ 0.61
PCDH1-205	ENST00000505937	FAM151A	Q8WW52	585 aa		18.87	■□□□□ 0.61
PCDH1-205	ENST00000505937	TEPSIN	Q96N21	525 aa		18.87	■□□□□ 0.61
PCDH1-205	ENST00000505937	ZBTB47	Q9UFB7	747 aa	Predicted RBP	18.87	■□□□□ 0.61
PCDH1-205	ENST00000505937	RPAP1	Q9BWH6	1393 aa	Predicted RBP	18.86	■□□□□ 0.61
PCDH1-205	ENST00000505937	GPR75-ASB3	A0A0A6YYF3	556 aa		18.86	■□□□□ 0.61
PCDH1-205	ENST00000505937	IDH1	O75874	414 aa	Known RBP	18.86	■□□□□ 0.61
PCDH1-205	ENST00000505937	BAG3	O95817	575 aa		18.86	■□□□□ 0.61
PCDH1-205	ENST00000505937	TCP10	Q12799	353 aa		18.86	■□□□□ 0.61
PCDH1-205	ENST00000505937	MAP3K12	Q12852	859 aa		18.86	■□□□□ 0.61
PCDH1-205	ENST00000505937	LDLRAD1	Q5T700	205 aa		18.86	■□□□□ 0.61
PCDH1-205	ENST00000505937	DCAF15	Q66K64	600 aa		18.86	■□□□□ 0.61
PCDH1-205	ENST00000505937	RASAL3	Q86YV0	1011 aa		18.86	■□□□□ 0.61
PCDH1-205	ENST00000505937	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	18.86	■□□□□ 0.61
PCDH1-205	ENST00000505937	WBP1L	Q9NX94	342 aa		18.86	■□□□□ 0.61
PCDH1-205	ENST00000505937	SUPT16H	Q9Y5B9	1047 aa	Known RBP	18.86	■□□□□ 0.61
PCDH1-205	ENST00000505937	PCNT	O95613	3336 aa		18.85	■□□□□ 0.61
PCDH1-205	ENST00000505937	FAM155A	B1AL88	458 aa	Predicted RBP	18.85	■□□□□ 0.61
PCDH1-205	ENST00000505937	PLCG2	P16885	1265 aa		18.85	■□□□□ 0.61
PCDH1-205	ENST00000505937	TMED8	Q6PL24	325 aa	Predicted RBP	18.85	■□□□□ 0.61
PCDH1-205	ENST00000505937	REM2	Q8IYK8	340 aa	Predicted RBP	18.85	■□□□□ 0.61
PCDH1-205	ENST00000505937	ANKRD13A	Q8IZ07	590 aa		18.85	■□□□□ 0.61
PCDH1-205	ENST00000505937	SLC10A4	Q96EP9	437 aa		18.85	■□□□□ 0.61
PCDH1-205	ENST00000505937	GPATCH3	Q96I76	525 aa		18.85	■□□□□ 0.61
PCDH1-205	ENST00000505937	IDI2	Q9BXS1	227 aa		18.85	■□□□□ 0.61
PCDH1-205	ENST00000505937	CA12	O43570	354 aa		18.84	■□□□□ 0.61
PCDH1-205	ENST00000505937	ENTPD3	O75355	529 aa		18.84	■□□□□ 0.61
PCDH1-205	ENST00000505937	USP2	O75604	605 aa	Predicted RBP	18.84	■□□□□ 0.61
PCDH1-205	ENST00000505937	NFIA	Q12857	509 aa		18.84	■□□□□ 0.61
PCDH1-205	ENST00000505937	DNAJC2	Q99543	621 aa	Known RBP	18.84	■□□□□ 0.61
PCDH1-205	ENST00000505937	PIH1D3	Q9NQM4	214 aa	Known RBP	18.84	■□□□□ 0.61
PCDH1-205	ENST00000505937	FZD1	Q9UP38	647 aa		18.84	■□□□□ 0.61
PCDH1-205	ENST00000505937	SSC5D	A1L4H1	1573 aa		18.84	■□□□□ 0.61
PCDH1-205	ENST00000505937	SMARCA5	O60264	1052 aa	Predicted RBP	18.83	■□□□□ 0.6
PCDH1-205	ENST00000505937	CTCF	P49711	727 aa	Predicted RBP	18.83	■□□□□ 0.6
PCDH1-205	ENST00000505937	RGS3	P49796	1198 aa		18.83	■□□□□ 0.6
PCDH1-205	ENST00000505937	KIF23	Q02241	960 aa	Predicted RBP	18.83	■□□□□ 0.6
PCDH1-205	ENST00000505937	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	18.83	■□□□□ 0.6
PCDH1-205	ENST00000505937	CDAN1	Q8IWY9	1227 aa		18.83	■□□□□ 0.6
PCDH1-205	ENST00000505937	ZNF384	Q8TF68	577 aa		18.83	■□□□□ 0.6
PCDH1-205	ENST00000505937	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	18.83	■□□□□ 0.6
PCDH1-205	ENST00000505937	FAM198A	Q9UFP1	575 aa		18.83	■□□□□ 0.6
PCDH1-205	ENST00000505937	CSAD	Q9Y600	493 aa		18.83	■□□□□ 0.6
PCDH1-205	ENST00000505937	MYH2	Q9UKX2	1941 aa		18.82	■□□□□ 0.6
PCDH1-205	ENST00000505937	ATP5J	P18859	108 aa		18.82	■□□□□ 0.6
PCDH1-205	ENST00000505937	CYP7A1	P22680	504 aa		18.82	■□□□□ 0.6
PCDH1-205	ENST00000505937	PICALM	Q13492	652 aa		18.82	■□□□□ 0.6
PCDH1-205	ENST00000505937	CERS3	Q8IU89	383 aa		18.82	■□□□□ 0.6
PCDH1-205	ENST00000505937	NDUFB9	Q9Y6M9	179 aa		18.82	■□□□□ 0.6
PCDH1-205	ENST00000505937	NPM3	O75607	178 aa	Known RBP	18.81	■□□□□ 0.6
PCDH1-205	ENST00000505937	WDHD1	O75717	1129 aa	Predicted RBP	18.81	■□□□□ 0.6
PCDH1-205	ENST00000505937	RHBDL3	P58872	404 aa		18.81	■□□□□ 0.6
PCDH1-205	ENST00000505937	MAP3K9	P80192	1104 aa		18.81	■□□□□ 0.6
PCDH1-205	ENST00000505937	HDAC1	Q13547	482 aa	Predicted RBP	18.81	■□□□□ 0.6
PCDH1-205	ENST00000505937	TEX11	Q8IYF3	940 aa		18.81	■□□□□ 0.6
PCDH1-205	ENST00000505937	MAGEB6	Q8N7X4	407 aa		18.81	■□□□□ 0.6
PCDH1-205	ENST00000505937	ZNF341	Q9BYN7	854 aa		18.81	■□□□□ 0.6
PCDH1-205	ENST00000505937	BOLA2	Q9H3K6	86 aa		18.81	■□□□□ 0.6
PCDH1-205	ENST00000505937	ECHDC1	Q9NTX5	307 aa		18.81	■□□□□ 0.6
PCDH1-205	ENST00000505937	AATF	Q9NY61	560 aa	Known RBP eCLIP	18.81	■□□□□ 0.6
PCDH1-205	ENST00000505937	THSD7B	Q9C0I4	1608 aa		18.81	■□□□□ 0.6
PCDH1-205	ENST00000505937	GOLIM4	O00461	696 aa		18.8	■□□□□ 0.6
PCDH1-205	ENST00000505937	FOXN1	O15353	648 aa		18.8	■□□□□ 0.6
PCDH1-205	ENST00000505937	PPP4C	P60510	307 aa		18.8	■□□□□ 0.6
PCDH1-205	ENST00000505937	GCC1	Q96CN9	775 aa		18.8	■□□□□ 0.6
PCDH1-205	ENST00000505937	WRNIP1	Q96S55	665 aa		18.8	■□□□□ 0.6
PCDH1-205	ENST00000505937	CSRNP1	Q96S65	589 aa		18.8	■□□□□ 0.6
PCDH1-205	ENST00000505937	ZIC5	Q96T25	663 aa		18.8	■□□□□ 0.6
PCDH1-205	ENST00000505937	RWDD1	Q9H446	243 aa	Predicted RBP	18.8	■□□□□ 0.6
PCDH1-205	ENST00000505937	ANTXR1	Q9H6X2	564 aa		18.8	■□□□□ 0.6
PCDH1-205	ENST00000505937	AKAP11	Q9UKA4	1901 aa		18.79	■□□□□ 0.6
PCDH1-205	ENST00000505937	ZBTB48	P10074	688 aa	Predicted RBP	18.79	■□□□□ 0.6
PCDH1-205	ENST00000505937	SREBF2	Q12772	1141 aa		18.79	■□□□□ 0.6
PCDH1-205	ENST00000505937	MKRN3	Q13064	507 aa	Known RBP	18.79	■□□□□ 0.6

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