RNA–Protein interactions for RNA: ENST00000494623.1

CHMP3-209, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2

Gene CHMP3, Length 2,724 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-209ENST00000494623 TOMM22Q9NS69 142 aa13.04□□□□□ -0.32
CHMP3-209ENST00000494623 ANO10Q9NW15 660 aa13.04□□□□□ -0.32
CHMP3-209ENST00000494623 FAM13BQ9NYF5 915 aa13.04□□□□□ -0.32
CHMP3-209ENST00000494623 ZSWIM5Q9P217 1185 aa13.04□□□□□ -0.32
CHMP3-209ENST00000494623 IQSEC3Q9UPP2 1182 aaPredicted RBP13.04□□□□□ -0.32
CHMP3-209ENST00000494623 SLIT2O94813 1529 aa13.03□□□□□ -0.32
CHMP3-209ENST00000494623 MYO5AQ9Y4I1 1855 aaKnown RBP13.03□□□□□ -0.32
CHMP3-209ENST00000494623 MYH7P12883 1935 aa13.03□□□□□ -0.32
CHMP3-209ENST00000494623 A0A1W2PQ27 194 aa13.03□□□□□ -0.32
CHMP3-209ENST00000494623 A0A1W2PQ64 194 aa13.03□□□□□ -0.32
CHMP3-209ENST00000494623 A0A1W2PQD8 194 aa13.03□□□□□ -0.32
CHMP3-209ENST00000494623 ZBTB43O43298 467 aa13.03□□□□□ -0.32
CHMP3-209ENST00000494623 GNL2Q13823 731 aaKnown RBP13.03□□□□□ -0.32
CHMP3-209ENST00000494623 RRP12Q5JTH9 1297 aaKnown RBP13.03□□□□□ -0.32
CHMP3-209ENST00000494623 ANO1Q5XXA6 986 aa13.03□□□□□ -0.32
CHMP3-209ENST00000494623 CPLX2Q6PUV4 134 aaKnown RBP13.03□□□□□ -0.32
CHMP3-209ENST00000494623 TMEM87BQ96K49 555 aa13.03□□□□□ -0.32
CHMP3-209ENST00000494623 POLR3EQ9NVU0 708 aa13.03□□□□□ -0.32
CHMP3-209ENST00000494623 CLIP2Q9UDT6 1046 aa13.03□□□□□ -0.32
CHMP3-209ENST00000494623 MYH3P11055 1940 aa13.03□□□□□ -0.32
CHMP3-209ENST00000494623 ATRNO75882 1429 aa13.03□□□□□ -0.32
CHMP3-209ENST00000494623 NUTM2BA6NNL0 878 aaPredicted RBP13.03□□□□□ -0.32
CHMP3-209ENST00000494623 NUTM2EB1AL46 878 aaPredicted RBP13.03□□□□□ -0.32
CHMP3-209ENST00000494623 IFIT3O14879 490 aaKnown RBP13.03□□□□□ -0.32
CHMP3-209ENST00000494623 CDKL5O76039 1030 aa13.03□□□□□ -0.32
CHMP3-209ENST00000494623 YEATS4O95619 227 aa13.03□□□□□ -0.32
CHMP3-209ENST00000494623 MARCKSP29966 332 aaPredicted RBP13.03□□□□□ -0.32
CHMP3-209ENST00000494623 ALX1Q15699 326 aa13.03□□□□□ -0.32
CHMP3-209ENST00000494623 PARP10Q53GL7 1025 aa13.03□□□□□ -0.32
CHMP3-209ENST00000494623 NUTM2AQ8IVF1 878 aaPredicted RBP13.03□□□□□ -0.32
CHMP3-209ENST00000494623 LY9Q9HBG7 655 aa13.03□□□□□ -0.32
CHMP3-209ENST00000494623 LRP2BPQ9P2M1 347 aa13.03□□□□□ -0.32
CHMP3-209ENST00000494623 SPATA31A1Q5TZJ5 1347 aa13.03□□□□□ -0.32
CHMP3-209ENST00000494623 GOLGA8AA7E2F4 631 aa13.02□□□□□ -0.32
CHMP3-209ENST00000494623 GSG1L2A8MUP6 293 aa13.02□□□□□ -0.32
CHMP3-209ENST00000494623 KRT40Q6A162 431 aa13.02□□□□□ -0.32
CHMP3-209ENST00000494623 LCORLQ8N3X6 602 aa13.02□□□□□ -0.32
CHMP3-209ENST00000494623 MIGA1Q8NAN2 632 aa13.02□□□□□ -0.32
CHMP3-209ENST00000494623 CDCA7Q9BWT1 371 aaPredicted RBP13.02□□□□□ -0.32
CHMP3-209ENST00000494623 TACC3Q9Y6A5 838 aa13.02□□□□□ -0.32
CHMP3-209ENST00000494623 SLC4A4Q9Y6R1 1079 aa13.02□□□□□ -0.32
CHMP3-209ENST00000494623 ANKRD36CQ5JPF3 1778 aa13.02□□□□□ -0.33
CHMP3-209ENST00000494623 IARSP41252 1262 aaKnown RBP13.02□□□□□ -0.33
CHMP3-209ENST00000494623 TDO2P48775 406 aa13.02□□□□□ -0.33
CHMP3-209ENST00000494623 CHRNDQ07001 517 aa13.02□□□□□ -0.33
CHMP3-209ENST00000494623 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.02□□□□□ -0.33
CHMP3-209ENST00000494623 ZKSCAN3Q9BRR0 538 aa13.02□□□□□ -0.33
CHMP3-209ENST00000494623 SLC12A7Q9Y666 1083 aa13.02□□□□□ -0.33
CHMP3-209ENST00000494623 MYH15Q9Y2K3 1946 aa13.02□□□□□ -0.33
CHMP3-209ENST00000494623 CCDC69A6NI79 296 aa13.01□□□□□ -0.33
CHMP3-209ENST00000494623 UBE2Q2LH0YL09 131 aa13.01□□□□□ -0.33
CHMP3-209ENST00000494623 NTSR2O95665 410 aa13.01□□□□□ -0.33
CHMP3-209ENST00000494623 MFSD6Q6ZSS7 791 aa13.01□□□□□ -0.33
CHMP3-209ENST00000494623 DHX40Q8IX18 779 aaKnown RBP13.01□□□□□ -0.33
CHMP3-209ENST00000494623 KCNQ2O43526 872 aa13.01□□□□□ -0.33
CHMP3-209ENST00000494623 ZRSR1Q15695 479 aaKnown RBP13.01□□□□□ -0.33
CHMP3-209ENST00000494623 AKNAD1Q5T1N1 836 aa13.01□□□□□ -0.33
CHMP3-209ENST00000494623 VPS37DQ86XT2 251 aa13.01□□□□□ -0.33
CHMP3-209ENST00000494623 SLC26A6Q9BXS9 759 aa13.01□□□□□ -0.33
CHMP3-209ENST00000494623 FAM217BQ9NTX9 383 aaPredicted RBP13.01□□□□□ -0.33
CHMP3-209ENST00000494623 WDHD1O75717 1129 aaPredicted RBP13□□□□□ -0.33
CHMP3-209ENST00000494623 ZNF202O95125 648 aa13□□□□□ -0.33
CHMP3-209ENST00000494623 TRIM29Q14134 588 aa13□□□□□ -0.33
CHMP3-209ENST00000494623 NTRK3Q16288 839 aa13□□□□□ -0.33
CHMP3-209ENST00000494623 CCDC144BQ3MJ40 725 aa13□□□□□ -0.33
CHMP3-209ENST00000494623 CEP57L1Q8IYX8 460 aa13□□□□□ -0.33
CHMP3-209ENST00000494623 AOPEPQ8N6M6 819 aa13□□□□□ -0.33
CHMP3-209ENST00000494623 NACAP1Q9BZK3 213 aa13□□□□□ -0.33
CHMP3-209ENST00000494623 KIAA1468Q9P260 1216 aa13□□□□□ -0.33
CHMP3-209ENST00000494623 ABCF2Q9UG63 623 aa13□□□□□ -0.33
CHMP3-209ENST00000494623 WTIPA6NIX2 430 aaPredicted RBP13□□□□□ -0.33
CHMP3-209ENST00000494623 BIN1O00499 593 aa13□□□□□ -0.33
CHMP3-209ENST00000494623 DYNC1I1O14576 645 aa13□□□□□ -0.33
CHMP3-209ENST00000494623 RANBP6O60518 1105 aaKnown RBP13□□□□□ -0.33
CHMP3-209ENST00000494623 AXDND1Q5T1B0 1012 aaPredicted RBP13□□□□□ -0.33
CHMP3-209ENST00000494623 SGMS1Q86VZ5 419 aa13□□□□□ -0.33
CHMP3-209ENST00000494623 THRAP3Q9Y2W1 955 aaKnown RBP13□□□□□ -0.33
CHMP3-209ENST00000494623 SLC39A14Q15043 492 aa12.99□□□□□ -0.33
CHMP3-209ENST00000494623 CCDC82Q8N4S0 544 aa12.99□□□□□ -0.33
CHMP3-209ENST00000494623 MYRIPQ8NFW9 859 aa12.99□□□□□ -0.33
CHMP3-209ENST00000494623 CACTINQ8WUQ7 758 aaKnown RBP12.99□□□□□ -0.33
CHMP3-209ENST00000494623 PRIMPOLQ96LW4 560 aa12.99□□□□□ -0.33
CHMP3-209ENST00000494623 KRT23Q9C075 422 aa12.99□□□□□ -0.33
CHMP3-209ENST00000494623 NAT10Q9H0A0 1025 aaKnown RBP12.99□□□□□ -0.33
CHMP3-209ENST00000494623 SLC3A2P08195 630 aaKnown RBP12.99□□□□□ -0.33
CHMP3-209ENST00000494623 PFKFB1P16118 471 aa12.99□□□□□ -0.33
CHMP3-209ENST00000494623 CYP7A1P22680 504 aa12.99□□□□□ -0.33
CHMP3-209ENST00000494623 CMA1P23946 247 aa12.99□□□□□ -0.33
CHMP3-209ENST00000494623 LIFRP42702 1097 aa12.99□□□□□ -0.33
CHMP3-209ENST00000494623 GYG1P46976 350 aa12.99□□□□□ -0.33
CHMP3-209ENST00000494623 KCNQ4P56696 695 aa12.99□□□□□ -0.33
CHMP3-209ENST00000494623 SSRP1Q08945 709 aaKnown RBP12.99□□□□□ -0.33
CHMP3-209ENST00000494623 SARM1Q6SZW1 724 aa12.99□□□□□ -0.33
CHMP3-209ENST00000494623 CNNM2Q9H8M5 875 aa12.99□□□□□ -0.33
CHMP3-209ENST00000494623 DOT1LQ8TEK3 1739 aa12.99□□□□□ -0.33
CHMP3-209ENST00000494623 MINDY4BA8MYZ0 360 aa12.98□□□□□ -0.33
CHMP3-209ENST00000494623 GNAT2P19087 354 aa12.98□□□□□ -0.33
CHMP3-209ENST00000494623 ISM2Q6H9L7 571 aa12.98□□□□□ -0.33
CHMP3-209ENST00000494623 BICDL1Q6ZP65 573 aa12.98□□□□□ -0.33
CHMP3-209ENST00000494623 TSC1Q92574 1164 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms