RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 RABEP2Q9H5N1 569 aa13.38□□□□□ -0.27
HDAC4-210ENST00000493582 RNF216Q9NWF9 866 aaPredicted RBP13.38□□□□□ -0.27
HDAC4-210ENST00000493582 DBNLQ9UJU6 430 aaKnown RBP13.38□□□□□ -0.27
HDAC4-210ENST00000493582 PCDHA5Q9Y5H7 936 aa13.38□□□□□ -0.27
HDAC4-210ENST00000493582 FLT4P35916 1363 aa13.38□□□□□ -0.27
HDAC4-210ENST00000493582 EXOC5O00471 708 aa13.38□□□□□ -0.27
HDAC4-210ENST00000493582 FOXN1O15353 648 aa13.38□□□□□ -0.27
HDAC4-210ENST00000493582 SYF2O95926 243 aaKnown RBP13.38□□□□□ -0.27
HDAC4-210ENST00000493582 MNAT1P51948 309 aa13.38□□□□□ -0.27
HDAC4-210ENST00000493582 TRMT44Q8IYL2 757 aaKnown RBP13.38□□□□□ -0.27
HDAC4-210ENST00000493582 GDAP1L1Q96MZ0 367 aa13.38□□□□□ -0.27
HDAC4-210ENST00000493582 N4BP2Q86UW6 1770 aaPredicted RBP13.38□□□□□ -0.27
HDAC4-210ENST00000493582 E7EWF7 191 aa13.37□□□□□ -0.27
HDAC4-210ENST00000493582 SHC4Q6S5L8 630 aa13.37□□□□□ -0.27
HDAC4-210ENST00000493582 MSL3Q8N5Y2 521 aaKnown RBP13.37□□□□□ -0.27
HDAC4-210ENST00000493582 AFAP1L1Q8TED9 768 aa13.37□□□□□ -0.27
HDAC4-210ENST00000493582 ADGRG1Q9Y653 693 aa13.37□□□□□ -0.27
HDAC4-210ENST00000493582 GRM8O00222 908 aa13.37□□□□□ -0.27
HDAC4-210ENST00000493582 ERLIN2O94905 339 aa13.37□□□□□ -0.27
HDAC4-210ENST00000493582 GSCP56915 257 aaPredicted RBP13.37□□□□□ -0.27
HDAC4-210ENST00000493582 LONRF3Q496Y0 759 aa13.37□□□□□ -0.27
HDAC4-210ENST00000493582 FBXW10Q5XX13 1052 aa13.37□□□□□ -0.27
HDAC4-210ENST00000493582 METTL16Q86W50 562 aaKnown RBP13.37□□□□□ -0.27
HDAC4-210ENST00000493582 CDC5LQ99459 802 aaKnown RBP13.37□□□□□ -0.27
HDAC4-210ENST00000493582 AGXT2Q9BYV1 514 aa13.37□□□□□ -0.27
HDAC4-210ENST00000493582 NFE2L3Q9Y4A8 694 aa13.37□□□□□ -0.27
HDAC4-210ENST00000493582 CCDC172P0C7W6 258 aa13.36□□□□□ -0.27
HDAC4-210ENST00000493582 CEP89Q96ST8 783 aa13.36□□□□□ -0.27
HDAC4-210ENST00000493582 MED4Q9NPJ6 270 aa13.36□□□□□ -0.27
HDAC4-210ENST00000493582 SPATA31D1Q6ZQQ2 1576 aa13.36□□□□□ -0.27
HDAC4-210ENST00000493582 USP31Q70CQ4 1352 aa13.36□□□□□ -0.27
HDAC4-210ENST00000493582 FMR1Q06787 632 aaKnown RBP eCLIP13.36□□□□□ -0.27
HDAC4-210ENST00000493582 AIMP1Q12904 312 aaKnown RBP13.36□□□□□ -0.27
HDAC4-210ENST00000493582 SLC35F6Q8N357 371 aa13.36□□□□□ -0.27
HDAC4-210ENST00000493582 ZNF274Q96GC6 653 aaPredicted RBP13.36□□□□□ -0.27
HDAC4-210ENST00000493582 BABAM1Q9NWV8 329 aa13.36□□□□□ -0.27
HDAC4-210ENST00000493582 SBNO1A3KN83 1393 aa13.36□□□□□ -0.27
HDAC4-210ENST00000493582 CTAGE15A4D2H0 777 aa13.36□□□□□ -0.27
HDAC4-210ENST00000493582 CTAGE9A4FU28 777 aa13.36□□□□□ -0.27
HDAC4-210ENST00000493582 CTAGE8P0CG41 777 aa13.36□□□□□ -0.27
HDAC4-210ENST00000493582 MAP2K2P36507 400 aa13.36□□□□□ -0.27
HDAC4-210ENST00000493582 CCT5P48643 541 aa13.36□□□□□ -0.27
HDAC4-210ENST00000493582 ZNF827Q17R98 1081 aa13.36□□□□□ -0.27
HDAC4-210ENST00000493582 CTAGE6Q86UF2 777 aa13.36□□□□□ -0.27
HDAC4-210ENST00000493582 CTAGE4Q8IX94 777 aa13.36□□□□□ -0.27
HDAC4-210ENST00000493582 IGSF22Q8N9C0 903 aa13.36□□□□□ -0.27
HDAC4-210ENST00000493582 TEX13AQ9BXU3 409 aaPredicted RBP13.36□□□□□ -0.27
HDAC4-210ENST00000493582 SAMSN1Q9NSI8 373 aaKnown RBP13.36□□□□□ -0.27
HDAC4-210ENST00000493582 CEP83Q9Y592 693 aa13.36□□□□□ -0.27
HDAC4-210ENST00000493582 ATP5JP18859 108 aa13.35□□□□□ -0.27
HDAC4-210ENST00000493582 HNRNPH1P31943 449 aaKnown RBP13.35□□□□□ -0.27
HDAC4-210ENST00000493582 SLC39A14Q15043 492 aa13.35□□□□□ -0.27
HDAC4-210ENST00000493582 SPECC1Q5M775 1068 aa13.35□□□□□ -0.27
HDAC4-210ENST00000493582 KSR2Q6VAB6 950 aa13.35□□□□□ -0.27
HDAC4-210ENST00000493582 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.35□□□□□ -0.27
HDAC4-210ENST00000493582 BANK1Q8NDB2 785 aa13.35□□□□□ -0.27
HDAC4-210ENST00000493582 ANKRD20A12PQ8NF67 263 aa13.35□□□□□ -0.27
HDAC4-210ENST00000493582 PRPF6O94906 941 aaKnown RBP13.35□□□□□ -0.27
HDAC4-210ENST00000493582 EIF5P55010 431 aaKnown RBP13.35□□□□□ -0.27
HDAC4-210ENST00000493582 NCAPH2Q6IBW4 605 aa13.35□□□□□ -0.27
HDAC4-210ENST00000493582 PRAMEF22A3QJZ6 481 aa13.34□□□□□ -0.27
HDAC4-210ENST00000493582 TEX33O43247 280 aa13.34□□□□□ -0.27
HDAC4-210ENST00000493582 AKAP17AQ02040 695 aaKnown RBP13.34□□□□□ -0.27
HDAC4-210ENST00000493582 GBP3Q9H0R5 595 aa13.34□□□□□ -0.27
HDAC4-210ENST00000493582 EHD4Q9H223 541 aa13.34□□□□□ -0.27
HDAC4-210ENST00000493582 DBF4Q9UBU7 674 aaPredicted RBP13.34□□□□□ -0.27
HDAC4-210ENST00000493582 HPSEQ9Y251 543 aa13.34□□□□□ -0.27
HDAC4-210ENST00000493582 RICTORQ6R327 1708 aa13.34□□□□□ -0.27
HDAC4-210ENST00000493582 AKR1B15C9JRZ8 316 aaPredicted RBP13.34□□□□□ -0.27
HDAC4-210ENST00000493582 KIF23Q02241 960 aaPredicted RBP13.34□□□□□ -0.27
HDAC4-210ENST00000493582 TFCP2Q12800 502 aa13.34□□□□□ -0.27
HDAC4-210ENST00000493582 BRAPQ7Z569 592 aa13.34□□□□□ -0.27
HDAC4-210ENST00000493582 AIFM3Q96NN9 605 aa13.34□□□□□ -0.27
HDAC4-210ENST00000493582 DBNDD2Q9BQY9 259 aa13.34□□□□□ -0.27
HDAC4-210ENST00000493582 ACBD3Q9H3P7 528 aa13.34□□□□□ -0.27
HDAC4-210ENST00000493582 RAI14Q9P0K7 980 aa13.34□□□□□ -0.27
HDAC4-210ENST00000493582 RBL2Q08999 1139 aa13.34□□□□□ -0.27
HDAC4-210ENST00000493582 EPHA10Q5JZY3 1008 aa13.34□□□□□ -0.27
HDAC4-210ENST00000493582 USP6P35125 1406 aa13.33□□□□□ -0.27
HDAC4-210ENST00000493582 CLGNO14967 610 aa13.33□□□□□ -0.28
HDAC4-210ENST00000493582 CCDC102BQ68D86 513 aa13.33□□□□□ -0.28
HDAC4-210ENST00000493582 KCNV1Q6PIU1 500 aa13.33□□□□□ -0.28
HDAC4-210ENST00000493582 SMARCC1Q92922 1105 aaPredicted RBP13.33□□□□□ -0.28
HDAC4-210ENST00000493582 FAM169AQ9Y6X4 670 aa13.33□□□□□ -0.28
HDAC4-210ENST00000493582 ZMYND10O75800 440 aa13.33□□□□□ -0.28
HDAC4-210ENST00000493582 ZNF18P17022 549 aa13.33□□□□□ -0.28
HDAC4-210ENST00000493582 ARHGEF25Q86VW2 580 aa13.33□□□□□ -0.28
HDAC4-210ENST00000493582 ACRBPQ8NEB7 543 aa13.33□□□□□ -0.28
HDAC4-210ENST00000493582 MED15Q96RN5 788 aa13.33□□□□□ -0.28
HDAC4-210ENST00000493582 NR1I3Q14994 352 aa13.32□□□□□ -0.28
HDAC4-210ENST00000493582 TNNI3KQ59H18 835 aa13.32□□□□□ -0.28
HDAC4-210ENST00000493582 SUFUQ9UMX1 484 aa13.32□□□□□ -0.28
HDAC4-210ENST00000493582 FPGT-TNNI3KV9GXZ4 949 aa13.32□□□□□ -0.28
HDAC4-210ENST00000493582 BTBD11A6QL63 1104 aa13.32□□□□□ -0.28
HDAC4-210ENST00000493582 CPLX1O14810 134 aa13.32□□□□□ -0.28
HDAC4-210ENST00000493582 ATP6V1AP38606 617 aa13.32□□□□□ -0.28
HDAC4-210ENST00000493582 LINS1Q8NG48 757 aa13.32□□□□□ -0.28
HDAC4-210ENST00000493582 KAT14Q9H8E8 782 aa13.32□□□□□ -0.28
HDAC4-210ENST00000493582 NCAPD2Q15021 1401 aa13.32□□□□□ -0.28
HDAC4-210ENST00000493582 PLEKHG3A1L390 1219 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms