RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 ZCCHC17Q9NP64 241 aaKnown RBP14.42□□□□□ -0.1
COL6A3-213ENST00000493475 CEP126Q9P2H0 1117 aa14.42□□□□□ -0.1
COL6A3-213ENST00000493475 ARAP2Q8WZ64 1704 aa14.41□□□□□ -0.1
COL6A3-213ENST00000493475 SEMA3EO15041 775 aa14.41□□□□□ -0.1
COL6A3-213ENST00000493475 SLFN5Q08AF3 891 aa14.41□□□□□ -0.1
COL6A3-213ENST00000493475 SNAPC2Q13487 334 aa14.41□□□□□ -0.1
COL6A3-213ENST00000493475 SLF2Q8IX21 1173 aa14.41□□□□□ -0.1
COL6A3-213ENST00000493475 VGLL2Q8N8G2 317 aa14.41□□□□□ -0.1
COL6A3-213ENST00000493475 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.41□□□□□ -0.1
COL6A3-213ENST00000493475 WRNIP1Q96S55 665 aa14.41□□□□□ -0.1
COL6A3-213ENST00000493475 TMEM106CQ9BVX2 250 aa14.41□□□□□ -0.1
COL6A3-213ENST00000493475 ZNF341Q9BYN7 854 aa14.41□□□□□ -0.1
COL6A3-213ENST00000493475 RPAP1Q9BWH6 1393 aaPredicted RBP14.4□□□□□ -0.1
COL6A3-213ENST00000493475 SPDYE5A6NIY4 337 aa14.4□□□□□ -0.1
COL6A3-213ENST00000493475 CIAO1O76071 339 aa14.4□□□□□ -0.1
COL6A3-213ENST00000493475 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.4□□□□□ -0.1
COL6A3-213ENST00000493475 CD99L2Q8TCZ2 262 aa14.4□□□□□ -0.1
COL6A3-213ENST00000493475 TEPSINQ96N21 525 aa14.4□□□□□ -0.1
COL6A3-213ENST00000493475 PTPN22Q9Y2R2 807 aa14.4□□□□□ -0.1
COL6A3-213ENST00000493475 GNRH1P01148 92 aa14.39□□□□□ -0.11
COL6A3-213ENST00000493475 LDHBP07195 334 aaKnown RBP14.39□□□□□ -0.11
COL6A3-213ENST00000493475 IL15P40933 162 aaPredicted RBP14.39□□□□□ -0.11
COL6A3-213ENST00000493475 ATP2B3Q16720 1220 aa14.39□□□□□ -0.11
COL6A3-213ENST00000493475 R3HDMLQ9H3Y0 253 aa14.39□□□□□ -0.11
COL6A3-213ENST00000493475 PCDH10Q9P2E7 1040 aa14.39□□□□□ -0.11
COL6A3-213ENST00000493475 DENND2AQ9ULE3 1009 aa14.39□□□□□ -0.11
COL6A3-213ENST00000493475 FGFR2P21802 821 aa14.38□□□□□ -0.11
COL6A3-213ENST00000493475 GJA5P36382 358 aa14.38□□□□□ -0.11
COL6A3-213ENST00000493475 PPATQ06203 517 aa14.38□□□□□ -0.11
COL6A3-213ENST00000493475 PPIL2Q13356 520 aa14.38□□□□□ -0.11
COL6A3-213ENST00000493475 SLC9C1Q4G0N8 1177 aa14.38□□□□□ -0.11
COL6A3-213ENST00000493475 KLHDC4Q8TBB5 520 aa14.38□□□□□ -0.11
COL6A3-213ENST00000493475 FAM151AQ8WW52 585 aa14.38□□□□□ -0.11
COL6A3-213ENST00000493475 MS4A4AQ96JQ5 239 aa14.38□□□□□ -0.11
COL6A3-213ENST00000493475 AOX1Q06278 1338 aa14.38□□□□□ -0.11
COL6A3-213ENST00000493475 CACNB3P54284 484 aa14.37□□□□□ -0.11
COL6A3-213ENST00000493475 PRMT2P55345 433 aa14.37□□□□□ -0.11
COL6A3-213ENST00000493475 SPTY2D1Q68D10 685 aaPredicted RBP14.37□□□□□ -0.11
COL6A3-213ENST00000493475 APOBEC3HQ6NTF7 200 aaKnown RBP14.37□□□□□ -0.11
COL6A3-213ENST00000493475 BRI3BPQ8WY22 251 aa14.37□□□□□ -0.11
COL6A3-213ENST00000493475 PTPN18Q99952 460 aa14.37□□□□□ -0.11
COL6A3-213ENST00000493475 SIL1Q9H173 461 aa14.37□□□□□ -0.11
COL6A3-213ENST00000493475 AKAP2Q9Y2D5 859 aa14.37□□□□□ -0.11
COL6A3-213ENST00000493475 IPO8O15397 1037 aaKnown RBP14.36□□□□□ -0.11
COL6A3-213ENST00000493475 GNAI3P08754 354 aa14.36□□□□□ -0.11
COL6A3-213ENST00000493475 HOXD10P28358 340 aa14.36□□□□□ -0.11
COL6A3-213ENST00000493475 DZIP1Q86YF9 867 aaKnown RBP14.36□□□□□ -0.11
COL6A3-213ENST00000493475 ARMC5Q96C12 935 aa14.36□□□□□ -0.11
COL6A3-213ENST00000493475 SALL1Q9NSC2 1324 aa14.36□□□□□ -0.11
COL6A3-213ENST00000493475 LAMB1P07942 1786 aa14.35□□□□□ -0.11
COL6A3-213ENST00000493475 TLR2O60603 784 aa14.35□□□□□ -0.11
COL6A3-213ENST00000493475 CD44P16070 742 aaKnown RBP14.35□□□□□ -0.11
COL6A3-213ENST00000493475 SLC4A8Q2Y0W8 1093 aa14.35□□□□□ -0.11
COL6A3-213ENST00000493475 NOB1Q9ULX3 412 aaKnown RBP14.35□□□□□ -0.11
COL6A3-213ENST00000493475 FARP1Q9Y4F1 1045 aaPredicted RBP14.35□□□□□ -0.11
COL6A3-213ENST00000493475 SNCAIPQ9Y6H5 919 aa14.35□□□□□ -0.11
COL6A3-213ENST00000493475 TNRC18O15417 2968 aaPredicted RBP14.35□□□□□ -0.11
COL6A3-213ENST00000493475 IRF6O14896 467 aa14.34□□□□□ -0.11
COL6A3-213ENST00000493475 RFX5P48382 616 aaPredicted RBP14.34□□□□□ -0.11
COL6A3-213ENST00000493475 MVPQ14764 893 aaKnown RBP14.34□□□□□ -0.11
COL6A3-213ENST00000493475 GRIK5Q16478 980 aa14.34□□□□□ -0.11
COL6A3-213ENST00000493475 FAM43AQ8N2R8 423 aa14.34□□□□□ -0.11
COL6A3-213ENST00000493475 ZKSCAN4Q969J2 545 aaPredicted RBP14.34□□□□□ -0.11
COL6A3-213ENST00000493475 PICK1Q9NRD5 415 aa14.34□□□□□ -0.11
COL6A3-213ENST00000493475 USP40Q9NVE5 1235 aa14.34□□□□□ -0.11
COL6A3-213ENST00000493475 DAGLAQ9Y4D2 1042 aa14.34□□□□□ -0.11
COL6A3-213ENST00000493475 LRRFIP2Q9Y608 721 aaKnown RBP14.34□□□□□ -0.11
COL6A3-213ENST00000493475 TCP10Q12799 353 aa14.33□□□□□ -0.12
COL6A3-213ENST00000493475 GORABQ5T7V8 394 aa14.33□□□□□ -0.12
COL6A3-213ENST00000493475 MIGA2Q7L4E1 593 aa14.33□□□□□ -0.12
COL6A3-213ENST00000493475 ATG9AQ7Z3C6 839 aa14.33□□□□□ -0.12
COL6A3-213ENST00000493475 ANKRD23Q86SG2 305 aa14.33□□□□□ -0.12
COL6A3-213ENST00000493475 ZSCAN29Q8IWY8 852 aaPredicted RBP14.33□□□□□ -0.12
COL6A3-213ENST00000493475 CDAN1Q8IWY9 1227 aa14.33□□□□□ -0.12
COL6A3-213ENST00000493475 ARHGAP45Q92619 1136 aa14.33□□□□□ -0.12
COL6A3-213ENST00000493475 PARK7Q99497 189 aaKnown RBP14.33□□□□□ -0.12
COL6A3-213ENST00000493475 OTOFQ9HC10 1997 aa14.33□□□□□ -0.12
COL6A3-213ENST00000493475 BTBD19C9JJ37 291 aa14.32□□□□□ -0.12
COL6A3-213ENST00000493475 PRDX5P30044 214 aa14.32□□□□□ -0.12
COL6A3-213ENST00000493475 LACTBP83111 547 aaPredicted RBP14.32□□□□□ -0.12
COL6A3-213ENST00000493475 CDC42EP5Q6NZY7 148 aa14.32□□□□□ -0.12
COL6A3-213ENST00000493475 FASTKD5Q7L8L6 764 aaKnown RBP14.32□□□□□ -0.12
COL6A3-213ENST00000493475 CDCA7LQ96GN5 454 aa14.32□□□□□ -0.12
COL6A3-213ENST00000493475 COPRSQ9NQ92 184 aa14.32□□□□□ -0.12
COL6A3-213ENST00000493475 ABCF2Q9UG63 623 aa14.32□□□□□ -0.12
COL6A3-213ENST00000493475 PDS5AQ29RF7 1337 aaKnown RBP14.32□□□□□ -0.12
COL6A3-213ENST00000493475 CCER2I3L3R5 266 aa14.31□□□□□ -0.12
COL6A3-213ENST00000493475 SRGAP3O43295 1099 aa14.31□□□□□ -0.12
COL6A3-213ENST00000493475 ENTPD3O75355 529 aa14.31□□□□□ -0.12
COL6A3-213ENST00000493475 GSTO1P78417 241 aa14.31□□□□□ -0.12
COL6A3-213ENST00000493475 DIXDC1Q155Q3 683 aa14.31□□□□□ -0.12
COL6A3-213ENST00000493475 NOL9Q5SY16 702 aaKnown RBP14.31□□□□□ -0.12
COL6A3-213ENST00000493475 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.31□□□□□ -0.12
COL6A3-213ENST00000493475 ZNF333Q96JL9 665 aa14.31□□□□□ -0.12
COL6A3-213ENST00000493475 PDHXO00330 501 aa14.3□□□□□ -0.12
COL6A3-213ENST00000493475 CXCL11O14625 94 aa14.3□□□□□ -0.12
COL6A3-213ENST00000493475 MAP4K4O95819 1239 aaPredicted RBP14.3□□□□□ -0.12
COL6A3-213ENST00000493475 LDHCP07864 332 aa14.3□□□□□ -0.12
COL6A3-213ENST00000493475 CCDC102BQ68D86 513 aa14.3□□□□□ -0.12
COL6A3-213ENST00000493475 TRMT2AQ8IZ69 625 aaKnown RBP14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms