RNA–Protein interactions for RNA: ENST00000492506.1

HDAC3-213, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 830 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-213ENST00000492506 TRIM47Q96LD4 638 aa16.53■□□□□ 0.24
HDAC3-213ENST00000492506 RBM27Q9P2N5 1060 aaKnown RBP16.53■□□□□ 0.24
HDAC3-213ENST00000492506 MROH5Q6ZUA9 1318 aa16.52■□□□□ 0.24
HDAC3-213ENST00000492506 VGLL2Q8N8G2 317 aa16.52■□□□□ 0.24
HDAC3-213ENST00000492506 TBC1D22AQ8WUA7 517 aa16.52■□□□□ 0.24
HDAC3-213ENST00000492506 SUCLG2Q96I99 432 aa16.52■□□□□ 0.24
HDAC3-213ENST00000492506 PRO3102Q9H379 93 aa16.52■□□□□ 0.24
HDAC3-213ENST00000492506 C9orf78Q9NZ63 289 aaPredicted RBP16.52■□□□□ 0.24
HDAC3-213ENST00000492506 SRRDQ9UH36 339 aa16.52■□□□□ 0.24
HDAC3-213ENST00000492506 RPAP1Q9BWH6 1393 aaPredicted RBP16.51■□□□□ 0.23
HDAC3-213ENST00000492506 ALDH1L1O75891 902 aa16.51■□□□□ 0.23
HDAC3-213ENST00000492506 ECM2O94769 699 aaPredicted RBP16.51■□□□□ 0.23
HDAC3-213ENST00000492506 PSMC4P43686 418 aa16.51■□□□□ 0.23
HDAC3-213ENST00000492506 PPATQ06203 517 aa16.51■□□□□ 0.23
HDAC3-213ENST00000492506 CHAF1AQ13111 956 aaPredicted RBP16.51■□□□□ 0.23
HDAC3-213ENST00000492506 MOGSQ13724 837 aa16.51■□□□□ 0.23
HDAC3-213ENST00000492506 CPA4Q9UI42 421 aa16.51■□□□□ 0.23
HDAC3-213ENST00000492506 NBPF7P0C2Y1 421 aaPredicted RBP16.5■□□□□ 0.23
HDAC3-213ENST00000492506 OSBPP22059 807 aa16.5■□□□□ 0.23
HDAC3-213ENST00000492506 INPP5BP32019 993 aa16.5■□□□□ 0.23
HDAC3-213ENST00000492506 LRRC24Q50LG9 513 aa16.5■□□□□ 0.23
HDAC3-213ENST00000492506 ANKRD23Q86SG2 305 aa16.5■□□□□ 0.23
HDAC3-213ENST00000492506 WDR63Q8IWG1 891 aa16.5■□□□□ 0.23
HDAC3-213ENST00000492506 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.5■□□□□ 0.23
HDAC3-213ENST00000492506 SPINK5Q9NQ38 1064 aaPredicted RBP16.5■□□□□ 0.23
HDAC3-213ENST00000492506 KCNH4Q9UQ05 1017 aa16.5■□□□□ 0.23
HDAC3-213ENST00000492506 PTPRFP10586 1907 aa16.5■□□□□ 0.23
HDAC3-213ENST00000492506 A0A0C4DFX4 3053 aa16.5■□□□□ 0.23
HDAC3-213ENST00000492506 UTYO14607 1347 aa16.49■□□□□ 0.23
HDAC3-213ENST00000492506 GJB1P08034 283 aa16.49■□□□□ 0.23
HDAC3-213ENST00000492506 GRK4P32298 578 aa16.49■□□□□ 0.23
HDAC3-213ENST00000492506 GJA8P48165 433 aa16.49■□□□□ 0.23
HDAC3-213ENST00000492506 RABL6Q3YEC7 729 aaPredicted RBP16.49■□□□□ 0.23
HDAC3-213ENST00000492506 DCAF15Q66K64 600 aa16.49■□□□□ 0.23
HDAC3-213ENST00000492506 MIGA2Q7L4E1 593 aa16.49■□□□□ 0.23
HDAC3-213ENST00000492506 VPS37DQ86XT2 251 aa16.49■□□□□ 0.23
HDAC3-213ENST00000492506 DOCK3Q8IZD9 2030 aa16.49■□□□□ 0.23
HDAC3-213ENST00000492506 DPF3Q92784 378 aa16.49■□□□□ 0.23
HDAC3-213ENST00000492506 HOOK2Q96ED9 719 aa16.49■□□□□ 0.23
HDAC3-213ENST00000492506 ZNF341Q9BYN7 854 aa16.49■□□□□ 0.23
HDAC3-213ENST00000492506 SRCIN1Q9C0H9 1055 aa16.49■□□□□ 0.23
HDAC3-213ENST00000492506 ZNF112Q9UJU3 913 aa16.49■□□□□ 0.23
HDAC3-213ENST00000492506 ALPK3Q96L96 1907 aa16.49■□□□□ 0.23
HDAC3-213ENST00000492506 PDHXO00330 501 aa16.48■□□□□ 0.23
HDAC3-213ENST00000492506 PDE8BO95263 885 aa16.48■□□□□ 0.23
HDAC3-213ENST00000492506 BCAMP50895 628 aa16.48■□□□□ 0.23
HDAC3-213ENST00000492506 HHIPL2Q6UWX4 724 aa16.48■□□□□ 0.23
HDAC3-213ENST00000492506 ANKRD44Q8N8A2 993 aa16.48■□□□□ 0.23
HDAC3-213ENST00000492506 TMOD2Q9NZR1 351 aa16.48■□□□□ 0.23
HDAC3-213ENST00000492506 SUGT1Q9Y2Z0 365 aa16.48■□□□□ 0.23
HDAC3-213ENST00000492506 PHIPQ8WWQ0 1821 aa16.47■□□□□ 0.23
HDAC3-213ENST00000492506 DOCK2Q92608 1830 aa16.47■□□□□ 0.23
HDAC3-213ENST00000492506 CCL5P13501 91 aa16.47■□□□□ 0.23
HDAC3-213ENST00000492506 CAVIN4Q5BKX8 364 aa16.47■□□□□ 0.23
HDAC3-213ENST00000492506 SLC4A10Q6U841 1118 aa16.47■□□□□ 0.23
HDAC3-213ENST00000492506 NKX2-3Q8TAU0 364 aa16.47■□□□□ 0.23
HDAC3-213ENST00000492506 BICC1Q9H694 974 aaKnown RBP16.47■□□□□ 0.23
HDAC3-213ENST00000492506 MYPNQ86TC9 1320 aa16.46■□□□□ 0.23
HDAC3-213ENST00000492506 FRAT2O75474 233 aaPredicted RBP16.46■□□□□ 0.23
HDAC3-213ENST00000492506 FMNL1O95466 1100 aaPredicted RBP16.46■□□□□ 0.23
HDAC3-213ENST00000492506 BCRP11274 1271 aa16.46■□□□□ 0.23
HDAC3-213ENST00000492506 FGFR2P21802 821 aa16.46■□□□□ 0.23
HDAC3-213ENST00000492506 HOXD10P28358 340 aa16.46■□□□□ 0.23
HDAC3-213ENST00000492506 METTL24Q5JXM2 366 aa16.46■□□□□ 0.23
HDAC3-213ENST00000492506 RAET1EQ8TD07 263 aa16.46■□□□□ 0.23
HDAC3-213ENST00000492506 FAM151AQ8WW52 585 aa16.46■□□□□ 0.23
HDAC3-213ENST00000492506 SALL2Q9Y467 1007 aaPredicted RBP16.46■□□□□ 0.23
HDAC3-213ENST00000492506 MAST3O60307 1309 aa16.45■□□□□ 0.22
HDAC3-213ENST00000492506 KIF16BQ96L93 1317 aa16.45■□□□□ 0.22
HDAC3-213ENST00000492506 PRKCZQ05513 592 aa16.45■□□□□ 0.22
HDAC3-213ENST00000492506 NOL9Q5SY16 702 aaKnown RBP16.45■□□□□ 0.22
HDAC3-213ENST00000492506 GPAT2Q6NUI2 795 aa16.45■□□□□ 0.22
HDAC3-213ENST00000492506 KLHDC4Q8TBB5 520 aa16.45■□□□□ 0.22
HDAC3-213ENST00000492506 RNF208Q9H0X6 261 aa16.45■□□□□ 0.22
HDAC3-213ENST00000492506 ZBTB7BO15156 539 aaPredicted RBP16.44■□□□□ 0.22
HDAC3-213ENST00000492506 NFIAQ12857 509 aa16.44■□□□□ 0.22
HDAC3-213ENST00000492506 HTATIP2Q9BUP3 242 aa16.44■□□□□ 0.22
HDAC3-213ENST00000492506 GABRQQ9UN88 632 aa16.44■□□□□ 0.22
HDAC3-213ENST00000492506 MYH2Q9UKX2 1941 aa16.44■□□□□ 0.22
HDAC3-213ENST00000492506 ATRNL1Q5VV63 1379 aa16.43■□□□□ 0.22
HDAC3-213ENST00000492506 CYP2C8P10632 490 aa16.43■□□□□ 0.22
HDAC3-213ENST00000492506 TCP10Q12799 353 aa16.43■□□□□ 0.22
HDAC3-213ENST00000492506 CDC42EP5Q6NZY7 148 aa16.43■□□□□ 0.22
HDAC3-213ENST00000492506 U2AF1L4Q8WU68 220 aaKnown RBP16.43■□□□□ 0.22
HDAC3-213ENST00000492506 UNC93B1Q9H1C4 597 aa16.43■□□□□ 0.22
HDAC3-213ENST00000492506 FAM198AQ9UFP1 575 aa16.43■□□□□ 0.22
HDAC3-213ENST00000492506 NOP58Q9Y2X3 529 aaKnown RBP16.43■□□□□ 0.22
HDAC3-213ENST00000492506 DAGLAQ9Y4D2 1042 aa16.43■□□□□ 0.22
HDAC3-213ENST00000492506 DOCK1Q14185 1865 aa16.42■□□□□ 0.22
HDAC3-213ENST00000492506 PUM3Q15397 648 aaKnown RBP16.42■□□□□ 0.22
HDAC3-213ENST00000492506 PARK7Q99497 189 aaKnown RBP16.42■□□□□ 0.22
HDAC3-213ENST00000492506 CXCL11O14625 94 aa16.41■□□□□ 0.22
HDAC3-213ENST00000492506 FARP2O94887 1054 aaPredicted RBP16.41■□□□□ 0.22
HDAC3-213ENST00000492506 SGPL1O95470 568 aa16.41■□□□□ 0.22
HDAC3-213ENST00000492506 FCGRTP55899 365 aa16.41■□□□□ 0.22
HDAC3-213ENST00000492506 UBXN2AP68543 259 aa16.41■□□□□ 0.22
HDAC3-213ENST00000492506 DIXDC1Q155Q3 683 aa16.41■□□□□ 0.22
HDAC3-213ENST00000492506 ZFPM1Q8IX07 1006 aa16.41■□□□□ 0.22
HDAC3-213ENST00000492506 SLAIN1Q8ND83 568 aa16.41■□□□□ 0.22
HDAC3-213ENST00000492506 NR2E3Q9Y5X4 410 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms