RNA–Protein interactions for RNA: ENST00000492407.1

HDAC3-212, Transcript of histone deacetylase 3, humanhuman

TSL 5

Gene HDAC3, Length 782 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-212ENST00000492407 UBTFL1P0CB47 393 aaPredicted RBP11.38□□□□□ -0.59
HDAC3-212ENST00000492407 IL15P40933 162 aaPredicted RBP11.38□□□□□ -0.59
HDAC3-212ENST00000492407 PRMT2P55345 433 aa11.38□□□□□ -0.59
HDAC3-212ENST00000492407 PPIL2Q13356 520 aa11.38□□□□□ -0.59
HDAC3-212ENST00000492407 TAF1CQ15572 869 aaPredicted RBP11.38□□□□□ -0.59
HDAC3-212ENST00000492407 NBPF11Q86T75 865 aa11.38□□□□□ -0.59
HDAC3-212ENST00000492407 KLHDC4Q8TBB5 520 aa11.38□□□□□ -0.59
HDAC3-212ENST00000492407 CD99L2Q8TCZ2 262 aa11.38□□□□□ -0.59
HDAC3-212ENST00000492407 ARHGAP45Q92619 1136 aa11.38□□□□□ -0.59
HDAC3-212ENST00000492407 GCC1Q96CN9 775 aa11.38□□□□□ -0.59
HDAC3-212ENST00000492407 SMC4Q9NTJ3 1288 aa11.38□□□□□ -0.59
HDAC3-212ENST00000492407 ZNF112Q9UJU3 913 aa11.38□□□□□ -0.59
HDAC3-212ENST00000492407 DENND2AQ9ULE3 1009 aa11.38□□□□□ -0.59
HDAC3-212ENST00000492407 SNCAIPQ9Y6H5 919 aa11.38□□□□□ -0.59
HDAC3-212ENST00000492407 PDS5AQ29RF7 1337 aaKnown RBP11.37□□□□□ -0.59
HDAC3-212ENST00000492407 TLR2O60603 784 aa11.37□□□□□ -0.59
HDAC3-212ENST00000492407 ATP2B3Q16720 1220 aa11.37□□□□□ -0.59
HDAC3-212ENST00000492407 CDAN1Q8IWY9 1227 aa11.37□□□□□ -0.59
HDAC3-212ENST00000492407 ZGPATQ8N5A5 531 aaKnown RBP11.37□□□□□ -0.59
HDAC3-212ENST00000492407 OTUD5Q96G74 571 aa11.37□□□□□ -0.59
HDAC3-212ENST00000492407 WRNIP1Q96S55 665 aa11.37□□□□□ -0.59
HDAC3-212ENST00000492407 COPRSQ9NQ92 184 aa11.37□□□□□ -0.59
HDAC3-212ENST00000492407 LDHBP07195 334 aaKnown RBP11.36□□□□□ -0.59
HDAC3-212ENST00000492407 CACNB3P54284 484 aa11.36□□□□□ -0.59
HDAC3-212ENST00000492407 KIF22Q14807 665 aa11.36□□□□□ -0.59
HDAC3-212ENST00000492407 NOL9Q5SY16 702 aaKnown RBP11.36□□□□□ -0.59
HDAC3-212ENST00000492407 ANKRD23Q86SG2 305 aa11.36□□□□□ -0.59
HDAC3-212ENST00000492407 SLF2Q8IX21 1173 aa11.36□□□□□ -0.59
HDAC3-212ENST00000492407 FAM43AQ8N2R8 423 aa11.36□□□□□ -0.59
HDAC3-212ENST00000492407 FAM163AQ96GL9 167 aaPredicted RBP11.36□□□□□ -0.59
HDAC3-212ENST00000492407 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.36□□□□□ -0.59
HDAC3-212ENST00000492407 IRF6O14896 467 aa11.35□□□□□ -0.59
HDAC3-212ENST00000492407 ENTPD3O75355 529 aa11.35□□□□□ -0.59
HDAC3-212ENST00000492407 GNAI3P08754 354 aa11.35□□□□□ -0.59
HDAC3-212ENST00000492407 CDC42EP5Q6NZY7 148 aa11.35□□□□□ -0.59
HDAC3-212ENST00000492407 CNKSR2Q8WXI2 1034 aa11.35□□□□□ -0.59
HDAC3-212ENST00000492407 ZKSCAN4Q969J2 545 aaPredicted RBP11.35□□□□□ -0.59
HDAC3-212ENST00000492407 ZNF333Q96JL9 665 aa11.35□□□□□ -0.59
HDAC3-212ENST00000492407 TMEM106CQ9BVX2 250 aa11.35□□□□□ -0.59
HDAC3-212ENST00000492407 IDI2Q9BXS1 227 aa11.35□□□□□ -0.59
HDAC3-212ENST00000492407 NOB1Q9ULX3 412 aaKnown RBP11.35□□□□□ -0.59
HDAC3-212ENST00000492407 KCNH4Q9UQ05 1017 aa11.35□□□□□ -0.59
HDAC3-212ENST00000492407 DAGLAQ9Y4D2 1042 aa11.35□□□□□ -0.59
HDAC3-212ENST00000492407 PDE4DIPQ5VU43 2346 aa11.34□□□□□ -0.59
HDAC3-212ENST00000492407 BTBD19C9JJ37 291 aa11.34□□□□□ -0.59
HDAC3-212ENST00000492407 CCER2I3L3R5 266 aa11.34□□□□□ -0.59
HDAC3-212ENST00000492407 CXCL11O14625 94 aa11.34□□□□□ -0.59
HDAC3-212ENST00000492407 MAP4K4O95819 1239 aaPredicted RBP11.34□□□□□ -0.59
HDAC3-212ENST00000492407 LACTBP83111 547 aaPredicted RBP11.34□□□□□ -0.59
HDAC3-212ENST00000492407 MTX1Q13505 466 aa11.34□□□□□ -0.59
HDAC3-212ENST00000492407 SPTY2D1Q68D10 685 aaPredicted RBP11.34□□□□□ -0.59
HDAC3-212ENST00000492407 CDCA7LQ96GN5 454 aa11.34□□□□□ -0.59
HDAC3-212ENST00000492407 USP40Q9NVE5 1235 aa11.34□□□□□ -0.59
HDAC3-212ENST00000492407 AKAP2Q9Y2D5 859 aa11.34□□□□□ -0.59
HDAC3-212ENST00000492407 IGSF3O75054 1194 aa11.33□□□□□ -0.6
HDAC3-212ENST00000492407 NPM3O75607 178 aaKnown RBP11.33□□□□□ -0.6
HDAC3-212ENST00000492407 CAPN2P17655 700 aa11.33□□□□□ -0.6
HDAC3-212ENST00000492407 HOXD10P28358 340 aa11.33□□□□□ -0.6
HDAC3-212ENST00000492407 PRDX5P30044 214 aa11.33□□□□□ -0.6
HDAC3-212ENST00000492407 MAP3K10Q02779 954 aa11.33□□□□□ -0.6
HDAC3-212ENST00000492407 SLC9C1Q4G0N8 1177 aa11.33□□□□□ -0.6
HDAC3-212ENST00000492407 C17orf99Q6UX52 265 aa11.33□□□□□ -0.6
HDAC3-212ENST00000492407 LRRFIP2Q9Y608 721 aaKnown RBP11.33□□□□□ -0.6
HDAC3-212ENST00000492407 GAKO14976 1311 aa11.33□□□□□ -0.6
HDAC3-212ENST00000492407 POTEFA5A3E0 1075 aa11.32□□□□□ -0.6
HDAC3-212ENST00000492407 IPO8O15397 1037 aaKnown RBP11.32□□□□□ -0.6
HDAC3-212ENST00000492407 INPP5BP32019 993 aa11.32□□□□□ -0.6
HDAC3-212ENST00000492407 RARSP54136 660 aaKnown RBP11.32□□□□□ -0.6
HDAC3-212ENST00000492407 DIXDC1Q155Q3 683 aa11.32□□□□□ -0.6
HDAC3-212ENST00000492407 CCDC102BQ68D86 513 aa11.32□□□□□ -0.6
HDAC3-212ENST00000492407 MIGA2Q7L4E1 593 aa11.32□□□□□ -0.6
HDAC3-212ENST00000492407 SIL1Q9H173 461 aa11.32□□□□□ -0.6
HDAC3-212ENST00000492407 FAM198AQ9UFP1 575 aa11.32□□□□□ -0.6
HDAC3-212ENST00000492407 SLC45A1Q9Y2W3 748 aa11.32□□□□□ -0.6
HDAC3-212ENST00000492407 HTTP42858 3142 aa11.32□□□□□ -0.6
HDAC3-212ENST00000492407 OTOFQ9HC10 1997 aa11.31□□□□□ -0.6
HDAC3-212ENST00000492407 NEFLP07196 543 aa11.31□□□□□ -0.6
HDAC3-212ENST00000492407 PHKA1P46020 1223 aa11.31□□□□□ -0.6
HDAC3-212ENST00000492407 CAP1Q01518 475 aa11.31□□□□□ -0.6
HDAC3-212ENST00000492407 NFIAQ12857 509 aa11.31□□□□□ -0.6
HDAC3-212ENST00000492407 MVPQ14764 893 aaKnown RBP11.31□□□□□ -0.6
HDAC3-212ENST00000492407 FASTKD5Q7L8L6 764 aaKnown RBP11.31□□□□□ -0.6
HDAC3-212ENST00000492407 PTCH2Q9Y6C5 1203 aa11.31□□□□□ -0.6
HDAC3-212ENST00000492407 PHF20L1A8MW92 1017 aa11.3□□□□□ -0.6
HDAC3-212ENST00000492407 PDHXO00330 501 aa11.3□□□□□ -0.6
HDAC3-212ENST00000492407 TBC1D12O60347 775 aa11.3□□□□□ -0.6
HDAC3-212ENST00000492407 PDIA4P13667 645 aaKnown RBP11.3□□□□□ -0.6
HDAC3-212ENST00000492407 EN2P19622 333 aaPredicted RBP11.3□□□□□ -0.6
HDAC3-212ENST00000492407 KCNA4P22459 653 aa11.3□□□□□ -0.6
HDAC3-212ENST00000492407 TCP10Q12799 353 aa11.3□□□□□ -0.6
HDAC3-212ENST00000492407 MOGSQ13724 837 aa11.3□□□□□ -0.6
HDAC3-212ENST00000492407 DZIP1Q86YF9 867 aaKnown RBP11.3□□□□□ -0.6
HDAC3-212ENST00000492407 SCYL3Q8IZE3 742 aa11.3□□□□□ -0.6
HDAC3-212ENST00000492407 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.3□□□□□ -0.6
HDAC3-212ENST00000492407 PARK7Q99497 189 aaKnown RBP11.3□□□□□ -0.6
HDAC3-212ENST00000492407 ADGRA2Q96PE1 1338 aa11.3□□□□□ -0.6
HDAC3-212ENST00000492407 ATRNL1Q5VV63 1379 aa11.29□□□□□ -0.6
HDAC3-212ENST00000492407 RBBP6Q7Z6E9 1792 aaKnown RBP11.29□□□□□ -0.6
HDAC3-212ENST00000492407 GPR75-ASB3A0A0A6YYF3 556 aa11.29□□□□□ -0.6
HDAC3-212ENST00000492407 SRGAP3O43295 1099 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms