RNA–Protein interactions for RNA: ENST00000490924.1

VPS41-214, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-214ENST00000490924 A6NJY4 79 aa7.07□□□□□ -1.28
VPS41-214ENST00000490924 ZNF500O60304 480 aaPredicted RBP7.07□□□□□ -1.28
VPS41-214ENST00000490924 FAM157BP0CG42 384 aa7.07□□□□□ -1.28
VPS41-214ENST00000490924 PCBP4P57723 403 aaKnown RBP7.07□□□□□ -1.28
VPS41-214ENST00000490924 TRIM28Q13263 835 aaKnown RBP7.07□□□□□ -1.28
VPS41-214ENST00000490924 EIF4A2Q14240 407 aaKnown RBP7.07□□□□□ -1.28
VPS41-214ENST00000490924 ZNF468Q5VIY5 522 aaPredicted RBP7.07□□□□□ -1.28
VPS41-214ENST00000490924 MTERF4Q7Z6M4 381 aaKnown RBP7.07□□□□□ -1.28
VPS41-214ENST00000490924 SUGP2Q8IX01 1082 aaKnown RBP eCLIP7.07□□□□□ -1.28
VPS41-214ENST00000490924 PLPP7Q8NBV4 271 aa7.07□□□□□ -1.28
VPS41-214ENST00000490924 SYAP1Q96A49 352 aaPredicted RBP7.07□□□□□ -1.28
VPS41-214ENST00000490924 LMBRD1Q9NUN5 540 aa7.07□□□□□ -1.28
VPS41-214ENST00000490924 NOL7Q9UMY1 257 aaKnown RBP7.07□□□□□ -1.28
VPS41-214ENST00000490924 DDX49Q9Y6V7 483 aaKnown RBP7.07□□□□□ -1.28
VPS41-214ENST00000490924 ADAMTS13Q76LX8 1427 aa7.07□□□□□ -1.28
VPS41-214ENST00000490924 ADGRL3Q9HAR2 1447 aa7.07□□□□□ -1.28
VPS41-214ENST00000490924 DLG5Q8TDM6 1919 aa7.07□□□□□ -1.28
VPS41-214ENST00000490924 TNRQ92752 1358 aa7.07□□□□□ -1.28
VPS41-214ENST00000490924 SLIT1O75093 1534 aa7.06□□□□□ -1.28
VPS41-214ENST00000490924 ADAMTSL3P82987 1691 aa7.06□□□□□ -1.28
VPS41-214ENST00000490924 IGSF1Q8N6C5 1336 aa7.06□□□□□ -1.28
VPS41-214ENST00000490924 CACNA1FO60840 1977 aa7.06□□□□□ -1.28
VPS41-214ENST00000490924 ARHGAP23Q9P227 1491 aa7.06□□□□□ -1.28
VPS41-214ENST00000490924 ELOA3CA0A087WX78 387 aaPredicted RBP7.06□□□□□ -1.28
VPS41-214ENST00000490924 ELOA3DA6NLF2 546 aaPredicted RBP7.06□□□□□ -1.28
VPS41-214ENST00000490924 RAB11FIP3O75154 756 aa7.06□□□□□ -1.28
VPS41-214ENST00000490924 OFD1O75665 1012 aa7.06□□□□□ -1.28
VPS41-214ENST00000490924 GNAI2P04899 355 aa7.06□□□□□ -1.28
VPS41-214ENST00000490924 SDSP20132 328 aa7.06□□□□□ -1.28
VPS41-214ENST00000490924 ABL2P42684 1182 aa7.06□□□□□ -1.28
VPS41-214ENST00000490924 CHRNA4P43681 627 aa7.06□□□□□ -1.28
VPS41-214ENST00000490924 PDE1AP54750 535 aa7.06□□□□□ -1.28
VPS41-214ENST00000490924 EML3Q32P44 896 aa7.06□□□□□ -1.28
VPS41-214ENST00000490924 ELOA3BQ3SY89 546 aa7.06□□□□□ -1.28
VPS41-214ENST00000490924 NME9Q86XW9 330 aa7.06□□□□□ -1.28
VPS41-214ENST00000490924 PHTF2Q8N3S3 785 aa7.06□□□□□ -1.28
VPS41-214ENST00000490924 TMEM87AQ8NBN3 555 aa7.06□□□□□ -1.28
VPS41-214ENST00000490924 ELOA3Q8NG57 546 aa7.06□□□□□ -1.28
VPS41-214ENST00000490924 PANK2Q9BZ23 570 aa7.06□□□□□ -1.28
VPS41-214ENST00000490924 HDAC5Q9UQL6 1122 aa7.06□□□□□ -1.28
VPS41-214ENST00000490924 OVOS2A0A0G2JMS6 1433 aa7.05□□□□□ -1.28
VPS41-214ENST00000490924 LETM1O95202 739 aaPredicted RBP7.05□□□□□ -1.28
VPS41-214ENST00000490924 BRD1O95696 1058 aa7.05□□□□□ -1.28
VPS41-214ENST00000490924 HMOX1P09601 288 aa7.05□□□□□ -1.28
VPS41-214ENST00000490924 ATP4AP20648 1035 aa7.05□□□□□ -1.28
VPS41-214ENST00000490924 SSFA2P28290 1259 aa7.05□□□□□ -1.28
VPS41-214ENST00000490924 VAC14Q08AM6 782 aa7.05□□□□□ -1.28
VPS41-214ENST00000490924 UVSSAQ2YD98 709 aa7.05□□□□□ -1.28
VPS41-214ENST00000490924 CCDC30Q5VVM6 783 aa7.05□□□□□ -1.28
VPS41-214ENST00000490924 WAPLQ7Z5K2 1190 aa7.05□□□□□ -1.28
VPS41-214ENST00000490924 GAS2L3Q86XJ1 694 aa7.05□□□□□ -1.28
VPS41-214ENST00000490924 TICAM2Q86XR7 235 aa7.05□□□□□ -1.28
VPS41-214ENST00000490924 GZF1Q9H116 711 aaPredicted RBP7.05□□□□□ -1.28
VPS41-214ENST00000490924 ZNF232Q9UNY5 417 aa7.05□□□□□ -1.28
VPS41-214ENST00000490924 NOD1Q9Y239 953 aa7.05□□□□□ -1.28
VPS41-214ENST00000490924 UBR1Q8IWV7 1749 aa7.04□□□□□ -1.28
VPS41-214ENST00000490924 PRR36Q9H6K5 1346 aa7.04□□□□□ -1.28
VPS41-214ENST00000490924 USP42Q9H9J4 1324 aaKnown RBP7.04□□□□□ -1.28
VPS41-214ENST00000490924 LZTS3O60299 673 aaPredicted RBP7.04□□□□□ -1.28
VPS41-214ENST00000490924 STAU1O95793 577 aaKnown RBP7.04□□□□□ -1.28
VPS41-214ENST00000490924 PRKCSHP14314 528 aaPredicted RBP7.04□□□□□ -1.28
VPS41-214ENST00000490924 ZSCAN23Q3MJ62 389 aa7.04□□□□□ -1.28
VPS41-214ENST00000490924 TSGA10IPQ3SY00 556 aa7.04□□□□□ -1.28
VPS41-214ENST00000490924 HSP90AB4PQ58FF6 505 aa7.04□□□□□ -1.28
VPS41-214ENST00000490924 SAMD5Q5TGI4 173 aa7.04□□□□□ -1.28
VPS41-214ENST00000490924 SULT6B1Q6IMI4 303 aa7.04□□□□□ -1.28
VPS41-214ENST00000490924 LRSAM1Q6UWE0 723 aa7.04□□□□□ -1.28
VPS41-214ENST00000490924 NBPF11Q86T75 865 aa7.04□□□□□ -1.28
VPS41-214ENST00000490924 RTF1Q92541 710 aaKnown RBP7.04□□□□□ -1.28
VPS41-214ENST00000490924 ZIC5Q96T25 663 aa7.04□□□□□ -1.28
VPS41-214ENST00000490924 STK31Q9BXU1 1019 aa7.04□□□□□ -1.28
VPS41-214ENST00000490924 LRRCC1Q9C099 1032 aa7.04□□□□□ -1.28
VPS41-214ENST00000490924 DNAAF2Q9NVR5 837 aaKnown RBP7.04□□□□□ -1.28
VPS41-214ENST00000490924 TBX22Q9Y458 520 aa7.04□□□□□ -1.28
VPS41-214ENST00000490924 MAP3K5Q99683 1374 aa7.04□□□□□ -1.28
VPS41-214ENST00000490924 ROBO2Q9HCK4 1378 aa7.04□□□□□ -1.28
VPS41-214ENST00000490924 MX1P20591 662 aa7.03□□□□□ -1.28
VPS41-214ENST00000490924 MSNP26038 577 aaKnown RBP7.03□□□□□ -1.28
VPS41-214ENST00000490924 SCNN1DP51172 638 aa7.03□□□□□ -1.28
VPS41-214ENST00000490924 ATP8B2P98198 1209 aa7.03□□□□□ -1.28
VPS41-214ENST00000490924 FCHSD1Q86WN1 690 aa7.03□□□□□ -1.28
VPS41-214ENST00000490924 SSH3Q8TE77 659 aa7.03□□□□□ -1.28
VPS41-214ENST00000490924 THUMPD2Q9BTF0 503 aaKnown RBP7.03□□□□□ -1.28
VPS41-214ENST00000490924 PDCL3Q9H2J4 239 aa7.03□□□□□ -1.28
VPS41-214ENST00000490924 ATP6V1DQ9Y5K8 247 aa7.03□□□□□ -1.28
VPS41-214ENST00000490924 GPC6Q9Y625 555 aaPredicted RBP7.03□□□□□ -1.28
VPS41-214ENST00000490924 MED1Q15648 1581 aaPredicted RBP7.03□□□□□ -1.28
VPS41-214ENST00000490924 ACEP12821 1306 aa7.02□□□□□ -1.28
VPS41-214ENST00000490924 WDR33Q9C0J8 1336 aaKnown RBP7.02□□□□□ -1.28
VPS41-214ENST00000490924 PEAK1Q9H792 1746 aa7.02□□□□□ -1.29
VPS41-214ENST00000490924 TUBGCP6Q96RT7 1819 aa7.02□□□□□ -1.29
VPS41-214ENST00000490924 HOXB4P17483 251 aaPredicted RBP7.02□□□□□ -1.29
VPS41-214ENST00000490924 MTX1Q13505 466 aa7.02□□□□□ -1.29
VPS41-214ENST00000490924 SYT9Q86SS6 491 aa7.02□□□□□ -1.29
VPS41-214ENST00000490924 TMX3Q96JJ7 454 aa7.02□□□□□ -1.29
VPS41-214ENST00000490924 SLC4A9Q96Q91 983 aa7.02□□□□□ -1.29
VPS41-214ENST00000490924 MEIS3Q99687 375 aa7.02□□□□□ -1.29
VPS41-214ENST00000490924 C1orf115Q9H7X2 142 aa7.02□□□□□ -1.29
VPS41-214ENST00000490924 ANKIB1Q9P2G1 1089 aa7.02□□□□□ -1.29
VPS41-214ENST00000490924 CCDC39Q9UFE4 941 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms