RNA–Protein interactions for RNA: ENST00000489212.2

LIME1-207, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 559 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-207ENST00000489212 ZNF384Q8TF68 577 aa26.03■■□□□ 1.76
LIME1-207ENST00000489212 TLR7Q9NYK1 1049 aaKnown RBP26.03■■□□□ 1.76
LIME1-207ENST00000489212 DBNLQ9UJU6 430 aaKnown RBP26.03■■□□□ 1.76
LIME1-207ENST00000489212 GAKO14976 1311 aa26.03■■□□□ 1.76
LIME1-207ENST00000489212 AKAP11Q9UKA4 1901 aa26.02■■□□□ 1.76
LIME1-207ENST00000489212 UQCRFS1P1P0C7P4 283 aa26.02■■□□□ 1.76
LIME1-207ENST00000489212 SPTY2D1Q68D10 685 aaPredicted RBP26.02■■□□□ 1.76
LIME1-207ENST00000489212 DZIP1Q86YF9 867 aaKnown RBP26.02■■□□□ 1.76
LIME1-207ENST00000489212 CCDC8Q9H0W5 538 aaPredicted RBP26.02■■□□□ 1.76
LIME1-207ENST00000489212 OTOFQ9HC10 1997 aa26.02■■□□□ 1.76
LIME1-207ENST00000489212 IREB2P48200 963 aaKnown RBP26.01■■□□□ 1.75
LIME1-207ENST00000489212 NFIAQ12857 509 aa26.01■■□□□ 1.75
LIME1-207ENST00000489212 TTC39AQ5SRH9 613 aa26.01■■□□□ 1.75
LIME1-207ENST00000489212 ERICH6Q7L0X2 663 aa26.01■■□□□ 1.75
LIME1-207ENST00000489212 SNRKQ9NRH2 765 aa26.01■■□□□ 1.75
LIME1-207ENST00000489212 USP40Q9NVE5 1235 aa26.01■■□□□ 1.75
LIME1-207ENST00000489212 ZBTB4Q9P1Z0 1013 aaPredicted RBP26.01■■□□□ 1.75
LIME1-207ENST00000489212 MECOMQ03112 1051 aa26■■□□□ 1.75
LIME1-207ENST00000489212 CCDC158Q5M9N0 1113 aa26■■□□□ 1.75
LIME1-207ENST00000489212 TNS4Q8IZW8 715 aa26■■□□□ 1.75
LIME1-207ENST00000489212 CHMP4BQ9H444 224 aaKnown RBP26■■□□□ 1.75
LIME1-207ENST00000489212 RNF186Q9NXI6 227 aa26■■□□□ 1.75
LIME1-207ENST00000489212 IFFO2Q5TF58 517 aa25.99■■□□□ 1.75
LIME1-207ENST00000489212 SPRYD7Q5W111 196 aa25.99■■□□□ 1.75
LIME1-207ENST00000489212 ERC1Q8IUD2 1116 aa25.99■■□□□ 1.75
LIME1-207ENST00000489212 SLC10A4Q96EP9 437 aa25.99■■□□□ 1.75
LIME1-207ENST00000489212 FAM163AQ96GL9 167 aaPredicted RBP25.99■■□□□ 1.75
LIME1-207ENST00000489212 RPAP1Q9BWH6 1393 aaPredicted RBP25.98■■□□□ 1.75
LIME1-207ENST00000489212 UNCXA6NJT0 531 aa25.98■■□□□ 1.75
LIME1-207ENST00000489212 REM2Q8IYK8 340 aaPredicted RBP25.98■■□□□ 1.75
LIME1-207ENST00000489212 NSUN4Q96CB9 384 aaKnown RBP25.98■■□□□ 1.75
LIME1-207ENST00000489212 FAM198AQ9UFP1 575 aa25.98■■□□□ 1.75
LIME1-207ENST00000489212 MROH7-TTC4A0A0A0MT08 1334 aa25.97■■□□□ 1.75
LIME1-207ENST00000489212 HMMRO75330 724 aa25.97■■□□□ 1.75
LIME1-207ENST00000489212 TRPA1O75762 1119 aa25.97■■□□□ 1.75
LIME1-207ENST00000489212 TCP10Q12799 353 aa25.97■■□□□ 1.75
LIME1-207ENST00000489212 ANKRD13AQ8IZ07 590 aa25.97■■□□□ 1.75
LIME1-207ENST00000489212 RHPN1Q8TCX5 695 aa25.97■■□□□ 1.75
LIME1-207ENST00000489212 FAM151AQ8WW52 585 aa25.97■■□□□ 1.75
LIME1-207ENST00000489212 WNK4Q96J92 1243 aa25.97■■□□□ 1.75
LIME1-207ENST00000489212 ZNF512BQ96KM6 892 aaPredicted RBP25.97■■□□□ 1.75
LIME1-207ENST00000489212 IL1RAPL2Q9NP60 686 aa25.97■■□□□ 1.75
LIME1-207ENST00000489212 SAGE1Q9NXZ1 904 aa25.97■■□□□ 1.75
LIME1-207ENST00000489212 HSP90AB4PQ58FF6 505 aa25.96■■□□□ 1.75
LIME1-207ENST00000489212 PPP1R3FQ6ZSY5 799 aaPredicted RBP25.96■■□□□ 1.75
LIME1-207ENST00000489212 ZFPM1Q8IX07 1006 aa25.96■■□□□ 1.75
LIME1-207ENST00000489212 SLF2Q8IX21 1173 aa25.96■■□□□ 1.75
LIME1-207ENST00000489212 DDX55Q8NHQ9 600 aaKnown RBP eCLIP25.96■■□□□ 1.75
LIME1-207ENST00000489212 CASP8AP2Q9UKL3 1982 aa25.96■■□□□ 1.75
LIME1-207ENST00000489212 RFX7Q2KHR2 1363 aa25.95■■□□□ 1.75
LIME1-207ENST00000489212 CYP2E1P05181 493 aaPredicted RBP25.95■■□□□ 1.74
LIME1-207ENST00000489212 GJA5P36382 358 aa25.95■■□□□ 1.74
LIME1-207ENST00000489212 BTDP43251 543 aa25.95■■□□□ 1.74
LIME1-207ENST00000489212 TM4SF4P48230 202 aa25.95■■□□□ 1.74
LIME1-207ENST00000489212 AACSQ86V21 672 aa25.95■■□□□ 1.74
LIME1-207ENST00000489212 RAI14Q9P0K7 980 aa25.95■■□□□ 1.74
LIME1-207ENST00000489212 MYO5AQ9Y4I1 1855 aaKnown RBP25.94■■□□□ 1.74
LIME1-207ENST00000489212 GPR75-ASB3A0A0A6YYF3 556 aa25.94■■□□□ 1.74
LIME1-207ENST00000489212 APBB1O00213 710 aa25.94■■□□□ 1.74
LIME1-207ENST00000489212 ZAP70P43403 619 aa25.94■■□□□ 1.74
LIME1-207ENST00000489212 IDI2Q9BXS1 227 aa25.94■■□□□ 1.74
LIME1-207ENST00000489212 LRP2BPQ9P2M1 347 aa25.94■■□□□ 1.74
LIME1-207ENST00000489212 AK9Q5TCS8 1911 aa25.93■■□□□ 1.74
LIME1-207ENST00000489212 WDHD1O75717 1129 aaPredicted RBP25.93■■□□□ 1.74
LIME1-207ENST00000489212 RGS3P49796 1198 aa25.93■■□□□ 1.74
LIME1-207ENST00000489212 MAP3K9P80192 1104 aa25.93■■□□□ 1.74
LIME1-207ENST00000489212 ELP3Q9H9T3 547 aa25.93■■□□□ 1.74
LIME1-207ENST00000489212 ZBTB48P10074 688 aaPredicted RBP25.92■■□□□ 1.74
LIME1-207ENST00000489212 RHBDL3P58872 404 aa25.92■■□□□ 1.74
LIME1-207ENST00000489212 VGLL4Q14135 290 aa25.92■■□□□ 1.74
LIME1-207ENST00000489212 MIGA2Q7L4E1 593 aa25.92■■□□□ 1.74
LIME1-207ENST00000489212 KIF1BPQ96EK5 621 aa25.92■■□□□ 1.74
LIME1-207ENST00000489212 DDX4Q9NQI0 724 aaKnown RBP25.92■■□□□ 1.74
LIME1-207ENST00000489212 PIH1D3Q9NQM4 214 aaKnown RBP25.92■■□□□ 1.74
LIME1-207ENST00000489212 LAMB1P07942 1786 aa25.92■■□□□ 1.74
LIME1-207ENST00000489212 RRP1P56182 461 aaKnown RBP25.91■■□□□ 1.74
LIME1-207ENST00000489212 GSTO1P78417 241 aa25.91■■□□□ 1.74
LIME1-207ENST00000489212 CNKSR2Q8WXI2 1034 aa25.91■■□□□ 1.74
LIME1-207ENST00000489212 NDUFB9Q9Y6M9 179 aa25.91■■□□□ 1.74
LIME1-207ENST00000489212 MAST2Q6P0Q8 1798 aa25.9■■□□□ 1.74
LIME1-207ENST00000489212 LDHCP07864 332 aa25.9■■□□□ 1.74
LIME1-207ENST00000489212 SREBF2Q12772 1141 aa25.9■■□□□ 1.74
LIME1-207ENST00000489212 SH3BP5LQ7L8J4 393 aa25.9■■□□□ 1.74
LIME1-207ENST00000489212 OPTNQ96CV9 577 aa25.9■■□□□ 1.74
LIME1-207ENST00000489212 HOOK2Q96ED9 719 aa25.9■■□□□ 1.74
LIME1-207ENST00000489212 WRNIP1Q96S55 665 aa25.9■■□□□ 1.74
LIME1-207ENST00000489212 RAB11FIP3O75154 756 aa25.89■■□□□ 1.74
LIME1-207ENST00000489212 ENTPD3O75355 529 aa25.89■■□□□ 1.74
LIME1-207ENST00000489212 DCAF15Q66K64 600 aa25.89■■□□□ 1.74
LIME1-207ENST00000489212 ATRNL1Q5VV63 1379 aa25.88■■□□□ 1.73
LIME1-207ENST00000489212 MANSC4A6NHS7 340 aaPredicted RBP25.88■■□□□ 1.73
LIME1-207ENST00000489212 CLASRPQ8N2M8 674 aaKnown RBP25.88■■□□□ 1.73
LIME1-207ENST00000489212 ZKSCAN4Q969J2 545 aaPredicted RBP25.88■■□□□ 1.73
LIME1-207ENST00000489212 ZNF341Q9BYN7 854 aa25.88■■□□□ 1.73
LIME1-207ENST00000489212 CSADQ9Y600 493 aa25.88■■□□□ 1.73
LIME1-207ENST00000489212 SNCAIPQ9Y6H5 919 aa25.88■■□□□ 1.73
LIME1-207ENST00000489212 PICALMQ13492 652 aa25.87■■□□□ 1.73
LIME1-207ENST00000489212 NAA16Q6N069 864 aaPredicted RBP25.87■■□□□ 1.73
LIME1-207ENST00000489212 ADGRA1Q86SQ6 560 aa25.87■■□□□ 1.73
LIME1-207ENST00000489212 DOCK2Q92608 1830 aa25.86■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms