RNA–Protein interactions for RNA: ENST00000489156.1

SYNE1-227, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,891 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-227ENST00000489156 GLTPD2A6NH11 291 aa18.96■□□□□ 0.63
SYNE1-227ENST00000489156 PDE6AP16499 860 aa18.96■□□□□ 0.63
SYNE1-227ENST00000489156 RPS12P25398 132 aaKnown RBP18.96■□□□□ 0.63
SYNE1-227ENST00000489156 MAST2Q6P0Q8 1798 aa18.96■□□□□ 0.63
SYNE1-227ENST00000489156 USP17L8P0C7I0 530 aa18.95■□□□□ 0.62
SYNE1-227ENST00000489156 HSPD1P10809 573 aaKnown RBP18.95■□□□□ 0.62
SYNE1-227ENST00000489156 PSMA5P28066 241 aa18.95■□□□□ 0.62
SYNE1-227ENST00000489156 KRT32Q14532 448 aa18.95■□□□□ 0.62
SYNE1-227ENST00000489156 NAA16Q6N069 864 aaPredicted RBP18.95■□□□□ 0.62
SYNE1-227ENST00000489156 DPF2Q92785 391 aa18.95■□□□□ 0.62
SYNE1-227ENST00000489156 IGSF3O75054 1194 aa18.94■□□□□ 0.62
SYNE1-227ENST00000489156 CYP7A1P22680 504 aa18.94■□□□□ 0.62
SYNE1-227ENST00000489156 OGFOD1Q8N543 542 aa18.94■□□□□ 0.62
SYNE1-227ENST00000489156 ZSWIM6Q9HCJ5 1215 aa18.94■□□□□ 0.62
SYNE1-227ENST00000489156 CNOT7Q9UIV1 285 aaKnown RBP18.94■□□□□ 0.62
SYNE1-227ENST00000489156 ZNF532Q9HCE3 1301 aa18.94■□□□□ 0.62
SYNE1-227ENST00000489156 TCRBV5S4A2TA0A5A2 114 aa18.94■□□□□ 0.62
SYNE1-227ENST00000489156 M0R2C6 588 aa18.94■□□□□ 0.62
SYNE1-227ENST00000489156 ADGRA1Q86SQ6 560 aa18.94■□□□□ 0.62
SYNE1-227ENST00000489156 MICALL2Q8IY33 904 aa18.94■□□□□ 0.62
SYNE1-227ENST00000489156 PUS7LQ9H0K6 701 aaKnown RBP18.94■□□□□ 0.62
SYNE1-227ENST00000489156 TMED8Q6PL24 325 aaPredicted RBP18.93■□□□□ 0.62
SYNE1-227ENST00000489156 UPF3BQ9BZI7 483 aaKnown RBP18.93■□□□□ 0.62
SYNE1-227ENST00000489156 GPRC5DQ9NZD1 345 aa18.93■□□□□ 0.62
SYNE1-227ENST00000489156 CTNNA3Q9UI47 895 aa18.93■□□□□ 0.62
SYNE1-227ENST00000489156 HDAC9Q9UKV0 1011 aa18.93■□□□□ 0.62
SYNE1-227ENST00000489156 PCDHAC2Q9Y5I4 1007 aa18.93■□□□□ 0.62
SYNE1-227ENST00000489156 HSP90AA1P07900 732 aaKnown RBP18.92■□□□□ 0.62
SYNE1-227ENST00000489156 CRKP46108 304 aa18.92■□□□□ 0.62
SYNE1-227ENST00000489156 RBM5P52756 815 aaKnown RBP eCLIP18.92■□□□□ 0.62
SYNE1-227ENST00000489156 TEKT1Q969V4 418 aa18.92■□□□□ 0.62
SYNE1-227ENST00000489156 JAKMIP1Q96N16 626 aaKnown RBP18.92■□□□□ 0.62
SYNE1-227ENST00000489156 CYP46A1Q9Y6A2 500 aa18.92■□□□□ 0.62
SYNE1-227ENST00000489156 RPAP1Q9BWH6 1393 aaPredicted RBP18.92■□□□□ 0.62
SYNE1-227ENST00000489156 GPAA1O43292 621 aa18.92■□□□□ 0.62
SYNE1-227ENST00000489156 CASTP20810 708 aaKnown RBP18.92■□□□□ 0.62
SYNE1-227ENST00000489156 EPS15P42566 896 aa18.92■□□□□ 0.62
SYNE1-227ENST00000489156 GSTO1P78417 241 aa18.92■□□□□ 0.62
SYNE1-227ENST00000489156 TTC14Q96N46 770 aa18.92■□□□□ 0.62
SYNE1-227ENST00000489156 SLKQ9H2G2 1235 aaPredicted RBP18.92■□□□□ 0.62
SYNE1-227ENST00000489156 LDHCP07864 332 aa18.91■□□□□ 0.62
SYNE1-227ENST00000489156 HDLBPQ00341 1268 aaKnown RBP18.91■□□□□ 0.62
SYNE1-227ENST00000489156 ADCK5Q3MIX3 580 aa18.91■□□□□ 0.62
SYNE1-227ENST00000489156 RBM26Q5T8P6 1007 aaKnown RBP18.91■□□□□ 0.62
SYNE1-227ENST00000489156 VPS53Q5VIR6 699 aa18.91■□□□□ 0.62
SYNE1-227ENST00000489156 HHIPL2Q6UWX4 724 aa18.91■□□□□ 0.62
SYNE1-227ENST00000489156 RUFY3Q7L099 469 aa18.91■□□□□ 0.62
SYNE1-227ENST00000489156 SLF2Q8IX21 1173 aa18.91■□□□□ 0.62
SYNE1-227ENST00000489156 MIGA1Q8NAN2 632 aa18.91■□□□□ 0.62
SYNE1-227ENST00000489156 MRIQ9BWK5 157 aa18.91■□□□□ 0.62
SYNE1-227ENST00000489156 SERPINA10Q9UK55 444 aa18.91■□□□□ 0.62
SYNE1-227ENST00000489156 DAGLAQ9Y4D2 1042 aa18.91■□□□□ 0.62
SYNE1-227ENST00000489156 H7C1D1 291 aa18.9■□□□□ 0.62
SYNE1-227ENST00000489156 ZNF280AP59817 542 aaPredicted RBP18.9■□□□□ 0.62
SYNE1-227ENST00000489156 CFAP100Q494V2 611 aa18.9■□□□□ 0.62
SYNE1-227ENST00000489156 SAMD7Q7Z3H4 446 aa18.9■□□□□ 0.62
SYNE1-227ENST00000489156 FAM163AQ96GL9 167 aaPredicted RBP18.9■□□□□ 0.62
SYNE1-227ENST00000489156 L3MBTL3Q96JM7 780 aaPredicted RBP18.9■□□□□ 0.62
SYNE1-227ENST00000489156 MROH7-TTC4A0A0A0MT08 1334 aa18.9■□□□□ 0.62
SYNE1-227ENST00000489156 EGFRP00533 1210 aa18.9■□□□□ 0.62
SYNE1-227ENST00000489156 CYP21A2P08686 494 aa18.9■□□□□ 0.62
SYNE1-227ENST00000489156 LMOD1P29536 600 aaPredicted RBP18.9■□□□□ 0.62
SYNE1-227ENST00000489156 MYOZ2Q9NPC6 264 aa18.9■□□□□ 0.62
SYNE1-227ENST00000489156 GAKO14976 1311 aa18.89■□□□□ 0.61
SYNE1-227ENST00000489156 DDIT3P35638 169 aa18.89■□□□□ 0.61
SYNE1-227ENST00000489156 TBC1D10BQ4KMP7 808 aaPredicted RBP18.89■□□□□ 0.61
SYNE1-227ENST00000489156 AIDAQ96BJ3 306 aa18.89■□□□□ 0.61
SYNE1-227ENST00000489156 ZDHHC15Q96MV8 337 aa18.89■□□□□ 0.61
SYNE1-227ENST00000489156 ALDH8A1Q9H2A2 487 aaPredicted RBP18.89■□□□□ 0.61
SYNE1-227ENST00000489156 AATFQ9NY61 560 aaKnown RBP eCLIP18.89■□□□□ 0.61
SYNE1-227ENST00000489156 CIZ1Q9ULV3 898 aaPredicted RBP18.89■□□□□ 0.61
SYNE1-227ENST00000489156 SCN4AP35499 1836 aa18.89■□□□□ 0.61
SYNE1-227ENST00000489156 HMGB1P09429 215 aaKnown RBP18.88■□□□□ 0.61
SYNE1-227ENST00000489156 BTDP43251 543 aa18.88■□□□□ 0.61
SYNE1-227ENST00000489156 DYNLL1P63167 89 aaKnown RBP18.88■□□□□ 0.61
SYNE1-227ENST00000489156 DLGAP5Q15398 846 aa18.88■□□□□ 0.61
SYNE1-227ENST00000489156 APOBEC3HQ6NTF7 200 aaKnown RBP18.88■□□□□ 0.61
SYNE1-227ENST00000489156 BLOC1S2Q6QNY1 142 aa18.88■□□□□ 0.61
SYNE1-227ENST00000489156 SPRYD3Q8NCJ5 442 aa18.88■□□□□ 0.61
SYNE1-227ENST00000489156 TMX3Q96JJ7 454 aa18.88■□□□□ 0.61
SYNE1-227ENST00000489156 PRMT6Q96LA8 375 aaPredicted RBP18.88■□□□□ 0.61
SYNE1-227ENST00000489156 CHMP5Q9NZZ3 219 aa18.88■□□□□ 0.61
SYNE1-227ENST00000489156 WDR90Q96KV7 1748 aa18.88■□□□□ 0.61
SYNE1-227ENST00000489156 GPR75-ASB3A0A0A6YYF3 556 aa18.88■□□□□ 0.61
SYNE1-227ENST00000489156 MMP14P50281 582 aa18.88■□□□□ 0.61
SYNE1-227ENST00000489156 ZNF526Q8TF50 670 aaPredicted RBP18.88■□□□□ 0.61
SYNE1-227ENST00000489156 STRBPQ96SI9 672 aaKnown RBP18.88■□□□□ 0.61
SYNE1-227ENST00000489156 CWC22Q9HCG8 908 aaKnown RBP18.88■□□□□ 0.61
SYNE1-227ENST00000489156 PDRG1Q9NUG6 133 aa18.88■□□□□ 0.61
SYNE1-227ENST00000489156 MAGEB6P1A0A0J9YX57 407 aa18.87■□□□□ 0.61
SYNE1-227ENST00000489156 POTECB2RU33 542 aa18.87■□□□□ 0.61
SYNE1-227ENST00000489156 FOXP2O15409 715 aa18.87■□□□□ 0.61
SYNE1-227ENST00000489156 FGAP02671 866 aa18.87■□□□□ 0.61
SYNE1-227ENST00000489156 GNAT2P19087 354 aa18.87■□□□□ 0.61
SYNE1-227ENST00000489156 NEK1Q96PY6 1258 aa18.87■□□□□ 0.61
SYNE1-227ENST00000489156 HACL1Q9UJ83 578 aa18.87■□□□□ 0.61
SYNE1-227ENST00000489156 POLR2AP24928 1970 aaKnown RBP18.87■□□□□ 0.61
SYNE1-227ENST00000489156 ECM29Q5VYK3 1845 aa18.87■□□□□ 0.61
SYNE1-227ENST00000489156 SPDYE2BA6NHP3 402 aa18.86■□□□□ 0.61
SYNE1-227ENST00000489156 WNT10BO00744 389 aa18.86■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms