RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	OTOF	Q9HC10	1997 aa		11.08	□□□□□ -0.64
USP4-213	ENST00000488520	ZNF609	O15014	1411 aa		11.08	□□□□□ -0.64
USP4-213	ENST00000488520	PITPNM2	Q9BZ72	1349 aa		11.08	□□□□□ -0.64
USP4-213	ENST00000488520	MKI67	P46013	3256 aa	Known RBP	11.07	□□□□□ -0.64
USP4-213	ENST00000488520	PCCA	P05165	728 aa	Predicted RBP	11.07	□□□□□ -0.64
USP4-213	ENST00000488520	HSP90B1	P14625	803 aa	Known RBP	11.07	□□□□□ -0.64
USP4-213	ENST00000488520	EXOSC9	Q06265	439 aa	Known RBP	11.07	□□□□□ -0.64
USP4-213	ENST00000488520	MAP2K5	Q13163	448 aa		11.07	□□□□□ -0.64
USP4-213	ENST00000488520	TWISTNB	Q3B726	338 aa	Predicted RBP	11.07	□□□□□ -0.64
USP4-213	ENST00000488520	CCDC30	Q5VVM6	783 aa		11.07	□□□□□ -0.64
USP4-213	ENST00000488520	PODN	Q7Z5L7	613 aa		11.07	□□□□□ -0.64
USP4-213	ENST00000488520	CCDC191	Q8NCU4	936 aa		11.07	□□□□□ -0.64
USP4-213	ENST00000488520	STK31	Q9BXU1	1019 aa		11.07	□□□□□ -0.64
USP4-213	ENST00000488520	CWC25	Q9NXE8	425 aa	Predicted RBP	11.07	□□□□□ -0.64
USP4-213	ENST00000488520	AK9	Q5TCS8	1911 aa		11.06	□□□□□ -0.64
USP4-213	ENST00000488520	GPR25	O00155	361 aa		11.06	□□□□□ -0.64
USP4-213	ENST00000488520	SASH1	O94885	1247 aa		11.06	□□□□□ -0.64
USP4-213	ENST00000488520	KCNC4	Q03721	635 aa		11.06	□□□□□ -0.64
USP4-213	ENST00000488520	PKN2	Q16513	984 aa	Known RBP	11.06	□□□□□ -0.64
USP4-213	ENST00000488520	R3HDML	Q9H3Y0	253 aa		11.06	□□□□□ -0.64
USP4-213	ENST00000488520	FZD1	Q9UP38	647 aa		11.06	□□□□□ -0.64
USP4-213	ENST00000488520	ZNF521	Q96K83	1311 aa		11.06	□□□□□ -0.64
USP4-213	ENST00000488520	WNT10B	O00744	389 aa		11.05	□□□□□ -0.64
USP4-213	ENST00000488520	NF2	P35240	595 aa		11.05	□□□□□ -0.64
USP4-213	ENST00000488520	TM4SF4	P48230	202 aa		11.05	□□□□□ -0.64
USP4-213	ENST00000488520	PTPN12	Q05209	780 aa	Known RBP	11.05	□□□□□ -0.64
USP4-213	ENST00000488520	DACT2	Q5SW24	774 aa		11.05	□□□□□ -0.64
USP4-213	ENST00000488520	OGFOD1	Q8N543	542 aa		11.05	□□□□□ -0.64
USP4-213	ENST00000488520	C8orf58	Q8NAV2	365 aa		11.05	□□□□□ -0.64
USP4-213	ENST00000488520	METTL22	Q9BUU2	404 aa	Predicted RBP	11.05	□□□□□ -0.64
USP4-213	ENST00000488520	PRR14	Q9BWN1	585 aa		11.05	□□□□□ -0.64
USP4-213	ENST00000488520	FANCI	Q9NVI1	1328 aa		11.05	□□□□□ -0.64
USP4-213	ENST00000488520	MED23	Q9ULK4	1368 aa		11.04	□□□□□ -0.64
USP4-213	ENST00000488520	CT47B1	P0C2W7	299 aa	Predicted RBP	11.04	□□□□□ -0.64
USP4-213	ENST00000488520	CCT4	P50991	539 aa	Known RBP	11.04	□□□□□ -0.64
USP4-213	ENST00000488520	CTSW	P56202	376 aa		11.04	□□□□□ -0.64
USP4-213	ENST00000488520	FBXO46	Q6PJ61	603 aa	Predicted RBP	11.04	□□□□□ -0.64
USP4-213	ENST00000488520	TXNRD3	Q86VQ6	643 aa		11.04	□□□□□ -0.64
USP4-213	ENST00000488520	CDC5L	Q99459	802 aa	Known RBP	11.04	□□□□□ -0.64
USP4-213	ENST00000488520	GREM2	Q9H772	168 aa		11.04	□□□□□ -0.64
USP4-213	ENST00000488520	MINPP1	Q9UNW1	487 aa		11.04	□□□□□ -0.64
USP4-213	ENST00000488520	MAP3K2	Q9Y2U5	619 aa		11.04	□□□□□ -0.64
USP4-213	ENST00000488520	HTT	P42858	3142 aa		11.04	□□□□□ -0.64
USP4-213	ENST00000488520	ZSWIM8	A7E2V4	1837 aa		11.03	□□□□□ -0.64
USP4-213	ENST00000488520	FKTN	O75072	461 aa		11.03	□□□□□ -0.64
USP4-213	ENST00000488520	DDX58	O95786	925 aa	Known RBP	11.03	□□□□□ -0.64
USP4-213	ENST00000488520	SREBF2	Q12772	1141 aa		11.03	□□□□□ -0.64
USP4-213	ENST00000488520	TTLL5	Q6EMB2	1281 aa		11.03	□□□□□ -0.64
USP4-213	ENST00000488520	ARMC9	Q7Z3E5	817 aa		11.03	□□□□□ -0.64
USP4-213	ENST00000488520	KIAA0825	Q8IV33	1275 aa		11.03	□□□□□ -0.64
USP4-213	ENST00000488520	TTLL11	Q8NHH1	800 aa		11.03	□□□□□ -0.64
USP4-213	ENST00000488520	ANGEL1	Q9UNK9	670 aa	Known RBP	11.03	□□□□□ -0.64
USP4-213	ENST00000488520	MYH13	Q9UKX3	1938 aa		11.03	□□□□□ -0.64
USP4-213	ENST00000488520	BRCA2	P51587	3418 aa		11.03	□□□□□ -0.64
USP4-213	ENST00000488520	IRF6	O14896	467 aa		11.02	□□□□□ -0.65
USP4-213	ENST00000488520	VAMP4	O75379	141 aa		11.02	□□□□□ -0.65
USP4-213	ENST00000488520	IGKV5-2	P06315	115 aa		11.02	□□□□□ -0.65
USP4-213	ENST00000488520	KLRK1	P26718	216 aa		11.02	□□□□□ -0.65
USP4-213	ENST00000488520	TJAP1	Q5JTD0	557 aa		11.02	□□□□□ -0.65
USP4-213	ENST00000488520	STRIP1	Q5VSL9	837 aa		11.02	□□□□□ -0.65
USP4-213	ENST00000488520	TRMT2A	Q8IZ69	625 aa	Known RBP	11.02	□□□□□ -0.65
USP4-213	ENST00000488520	MTR	Q99707	1265 aa		11.02	□□□□□ -0.65
USP4-213	ENST00000488520	IL21	Q9HBE4	155 aa		11.02	□□□□□ -0.65
USP4-213	ENST00000488520	BSDC1	Q9NW68	430 aa	Predicted RBP	11.02	□□□□□ -0.65
USP4-213	ENST00000488520	DAXX	Q9UER7	740 aa	Predicted RBP	11.02	□□□□□ -0.65
USP4-213	ENST00000488520	MYO3B	Q8WXR4	1341 aa		11.02	□□□□□ -0.65
USP4-213	ENST00000488520	PI4KAP2	A4QPH2	592 aa		11.01	□□□□□ -0.65
USP4-213	ENST00000488520	GTF2I	P78347	998 aa		11.01	□□□□□ -0.65
USP4-213	ENST00000488520	CWF19L2	Q2TBE0	894 aa	Known RBP	11.01	□□□□□ -0.65
USP4-213	ENST00000488520	KMT5B	Q4FZB7	885 aa		11.01	□□□□□ -0.65
USP4-213	ENST00000488520	SPRYD7	Q5W111	196 aa		11.01	□□□□□ -0.65
USP4-213	ENST00000488520	APOBEC3F	Q8IUX4	373 aa	Known RBP	11.01	□□□□□ -0.65
USP4-213	ENST00000488520	TSPYL6	Q8N831	410 aa		11.01	□□□□□ -0.65
USP4-213	ENST00000488520	PI4KAP1	Q8N8J0	262 aa		11.01	□□□□□ -0.65
USP4-213	ENST00000488520	PHOX2B	Q99453	314 aa		11.01	□□□□□ -0.65
USP4-213	ENST00000488520	COA1	Q9GZY4	146 aa		11.01	□□□□□ -0.65
USP4-213	ENST00000488520	TRIM17	Q9Y577	477 aa		11.01	□□□□□ -0.65
USP4-213	ENST00000488520	CFH	P08603	1231 aa		11	□□□□□ -0.65
USP4-213	ENST00000488520	IGHMBP2	P38935	993 aa	Known RBP	11	□□□□□ -0.65
USP4-213	ENST00000488520	NOM1	Q5C9Z4	860 aa	Known RBP	11	□□□□□ -0.65
USP4-213	ENST00000488520	KSR2	Q6VAB6	950 aa		11	□□□□□ -0.65
USP4-213	ENST00000488520	UBE3B	Q7Z3V4	1068 aa		11	□□□□□ -0.65
USP4-213	ENST00000488520	NLRP7	Q8WX94	980 aa		11	□□□□□ -0.65
USP4-213	ENST00000488520	SLC10A4	Q96EP9	437 aa		11	□□□□□ -0.65
USP4-213	ENST00000488520	PCDHAC2	Q9Y5I4	1007 aa		11	□□□□□ -0.65
USP4-213	ENST00000488520	ZNF804B	A4D1E1	1349 aa		11	□□□□□ -0.65
USP4-213	ENST00000488520	CEP290	O15078	2479 aa		11	□□□□□ -0.65
USP4-213	ENST00000488520	ARAP2	Q8WZ64	1704 aa		11	□□□□□ -0.65
USP4-213	ENST00000488520		F8W031	263 aa	Predicted RBP	10.99	□□□□□ -0.65
USP4-213	ENST00000488520	KCNJ4	P48050	445 aa		10.99	□□□□□ -0.65
USP4-213	ENST00000488520	NEXN	Q0ZGT2	675 aa		10.99	□□□□□ -0.65
USP4-213	ENST00000488520	ALDH1L2	Q3SY69	923 aa		10.99	□□□□□ -0.65
USP4-213	ENST00000488520	LDLRAD1	Q5T700	205 aa		10.99	□□□□□ -0.65
USP4-213	ENST00000488520	CLMN	Q96JQ2	1002 aa		10.99	□□□□□ -0.65
USP4-213	ENST00000488520	MPHOSPH8	Q99549	860 aa		10.99	□□□□□ -0.65
USP4-213	ENST00000488520	LEMD3	Q9Y2U8	911 aa		10.99	□□□□□ -0.65
USP4-213	ENST00000488520	MGAM	O43451	1857 aa		10.98	□□□□□ -0.65
USP4-213	ENST00000488520	CLRN2	A0PK11	232 aa		10.98	□□□□□ -0.65
USP4-213	ENST00000488520	NEURL1B	A8MQ27	555 aa		10.98	□□□□□ -0.65
USP4-213	ENST00000488520	SNAP23	O00161	211 aa		10.98	□□□□□ -0.65

Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms