RNA–Protein interactions for RNA: ENST00000478916.5

SYNE1-224, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 7,780 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-224ENST00000478916 TLDC2A0PJX2 215 aa9.92□□□□□ -0.82
SYNE1-224ENST00000478916 GABPB1Q06547 395 aaPredicted RBP9.92□□□□□ -0.82
SYNE1-224ENST00000478916 MAP7Q14244 749 aa9.92□□□□□ -0.82
SYNE1-224ENST00000478916 ZNF569Q5MCW4 686 aa9.92□□□□□ -0.82
SYNE1-224ENST00000478916 MRPL50Q8N5N7 158 aaKnown RBP9.92□□□□□ -0.82
SYNE1-224ENST00000478916 EPSTI1Q96J88 318 aa9.92□□□□□ -0.82
SYNE1-224ENST00000478916 POLR3AO14802 1390 aaPredicted RBP9.92□□□□□ -0.82
SYNE1-224ENST00000478916 NUCB1Q02818 461 aa9.92□□□□□ -0.82
SYNE1-224ENST00000478916 CCDC14Q49A88 953 aa9.92□□□□□ -0.82
SYNE1-224ENST00000478916 VPS52Q8N1B4 723 aa9.92□□□□□ -0.82
SYNE1-224ENST00000478916 MCM9Q9NXL9 1143 aa9.92□□□□□ -0.82
SYNE1-224ENST00000478916 NDUFAB1O14561 156 aa9.92□□□□□ -0.82
SYNE1-224ENST00000478916 RIMBP2O15034 1052 aa9.92□□□□□ -0.82
SYNE1-224ENST00000478916 MAP2K2P36507 400 aa9.92□□□□□ -0.82
SYNE1-224ENST00000478916 STAT6P42226 847 aa9.92□□□□□ -0.82
SYNE1-224ENST00000478916 CCDC38Q502W7 563 aa9.92□□□□□ -0.82
SYNE1-224ENST00000478916 TSHZ3Q63HK5 1081 aa9.92□□□□□ -0.82
SYNE1-224ENST00000478916 CEP128Q6ZU80 1094 aa9.92□□□□□ -0.82
SYNE1-224ENST00000478916 BRF1Q92994 677 aa9.91□□□□□ -0.82
SYNE1-224ENST00000478916 ERO1AQ96HE7 468 aa9.91□□□□□ -0.82
SYNE1-224ENST00000478916 TBC1D32Q96NH3 1257 aa9.91□□□□□ -0.82
SYNE1-224ENST00000478916 DENND2AQ9ULE3 1009 aa9.91□□□□□ -0.82
SYNE1-224ENST00000478916 RNF113AO15541 343 aaKnown RBP9.91□□□□□ -0.82
SYNE1-224ENST00000478916 STMN1P16949 149 aa9.91□□□□□ -0.82
SYNE1-224ENST00000478916 CALML3P27482 149 aa9.91□□□□□ -0.82
SYNE1-224ENST00000478916 GKAP1Q5VSY0 366 aaPredicted RBP9.91□□□□□ -0.82
SYNE1-224ENST00000478916 RAB11FIP4Q86YS3 637 aa9.91□□□□□ -0.82
SYNE1-224ENST00000478916 ANKRD44Q8N8A2 993 aa9.91□□□□□ -0.82
SYNE1-224ENST00000478916 ALG1Q9BT22 464 aa9.91□□□□□ -0.82
SYNE1-224ENST00000478916 MMRN2Q9H8L6 949 aa9.91□□□□□ -0.82
SYNE1-224ENST00000478916 ERCC3P19447 782 aa9.91□□□□□ -0.82
SYNE1-224ENST00000478916 SYT10Q6XYQ8 523 aa9.91□□□□□ -0.82
SYNE1-224ENST00000478916 ARHGAP24Q8N264 748 aa9.91□□□□□ -0.82
SYNE1-224ENST00000478916 MAST3O60307 1309 aa9.91□□□□□ -0.82
SYNE1-224ENST00000478916 FAM160A1Q05DH4 1040 aa9.91□□□□□ -0.82
SYNE1-224ENST00000478916 WHAMMP3Q1A5X7 153 aa9.91□□□□□ -0.82
SYNE1-224ENST00000478916 TTC6Q86TZ1 520 aa9.91□□□□□ -0.82
SYNE1-224ENST00000478916 USP48Q86UV5 1035 aa9.91□□□□□ -0.82
SYNE1-224ENST00000478916 CCDC25Q86WR0 208 aa9.91□□□□□ -0.82
SYNE1-224ENST00000478916 MAGEB6Q8N7X4 407 aa9.91□□□□□ -0.82
SYNE1-224ENST00000478916 TTC16Q8NEE8 873 aa9.91□□□□□ -0.82
SYNE1-224ENST00000478916 DDX27Q96GQ7 796 aaKnown RBP9.91□□□□□ -0.82
SYNE1-224ENST00000478916 PPP1R7Q15435 360 aa9.9□□□□□ -0.82
SYNE1-224ENST00000478916 LARP6Q9BRS8 491 aaKnown RBP9.9□□□□□ -0.82
SYNE1-224ENST00000478916 MAST1Q9Y2H9 1570 aa9.9□□□□□ -0.82
SYNE1-224ENST00000478916 PSMA7O14818 248 aa9.9□□□□□ -0.82
SYNE1-224ENST00000478916 SATB1Q01826 763 aa9.9□□□□□ -0.82
SYNE1-224ENST00000478916 RGS22Q8NE09 1264 aa9.9□□□□□ -0.82
SYNE1-224ENST00000478916 CCDC26Q8TAB7 109 aa9.9□□□□□ -0.82
SYNE1-224ENST00000478916 HOOK2Q96ED9 719 aa9.9□□□□□ -0.82
SYNE1-224ENST00000478916 CCDC42Q96M95 316 aa9.9□□□□□ -0.82
SYNE1-224ENST00000478916 SNX16P57768 344 aa9.9□□□□□ -0.82
SYNE1-224ENST00000478916 PPP2R3AQ06190 1150 aa9.9□□□□□ -0.82
SYNE1-224ENST00000478916 TMEM110-MUSTN1A8MSY1 372 aa9.9□□□□□ -0.82
SYNE1-224ENST00000478916 TUBB2AQ13885 445 aa9.9□□□□□ -0.82
SYNE1-224ENST00000478916 KARSQ15046 597 aaKnown RBP9.9□□□□□ -0.82
SYNE1-224ENST00000478916 EYA1Q99502 592 aa9.9□□□□□ -0.82
SYNE1-224ENST00000478916 TUBB2BQ9BVA1 445 aa9.9□□□□□ -0.82
SYNE1-224ENST00000478916 GUCA1BQ9UMX6 200 aa9.9□□□□□ -0.82
SYNE1-224ENST00000478916 PDE1AP54750 535 aa9.9□□□□□ -0.82
SYNE1-224ENST00000478916 ZNF365Q70YC5 407 aa9.9□□□□□ -0.82
SYNE1-224ENST00000478916 CCDC170Q8IYT3 715 aa9.9□□□□□ -0.82
SYNE1-224ENST00000478916 C8orf58Q8NAV2 365 aa9.9□□□□□ -0.82
SYNE1-224ENST00000478916 ARHGEF2Q92974 986 aaKnown RBP9.9□□□□□ -0.82
SYNE1-224ENST00000478916 IMPG2Q9BZV3 1241 aa9.9□□□□□ -0.82
SYNE1-224ENST00000478916 RBM8AQ9Y5S9 174 aaKnown RBP9.9□□□□□ -0.82
SYNE1-224ENST00000478916 EVCP57679 992 aa9.9□□□□□ -0.83
SYNE1-224ENST00000478916 RNF10Q8N5U6 811 aaKnown RBP9.9□□□□□ -0.83
SYNE1-224ENST00000478916 TSPYL2Q9H2G4 693 aaPredicted RBP9.9□□□□□ -0.83
SYNE1-224ENST00000478916 MTUS1Q9ULD2 1270 aa9.9□□□□□ -0.83
SYNE1-224ENST00000478916 CNPY2Q9Y2B0 182 aa9.9□□□□□ -0.83
SYNE1-224ENST00000478916 A0A1W2PP64 1363 aa9.9□□□□□ -0.83
SYNE1-224ENST00000478916 SBNO1A3KN83 1393 aa9.9□□□□□ -0.83
SYNE1-224ENST00000478916 TCOF1Q13428 1488 aaKnown RBP9.9□□□□□ -0.83
SYNE1-224ENST00000478916 CERS3Q8IU89 383 aa9.89□□□□□ -0.83
SYNE1-224ENST00000478916 SUPT20HQ8NEM7 779 aa9.89□□□□□ -0.83
SYNE1-224ENST00000478916 MRPS27Q92552 414 aaKnown RBP9.89□□□□□ -0.83
SYNE1-224ENST00000478916 PPP1R9BQ96SB3 815 aa9.89□□□□□ -0.83
SYNE1-224ENST00000478916 NAP1L4Q99733 375 aaKnown RBP9.89□□□□□ -0.83
SYNE1-224ENST00000478916 DNAJC25Q9H1X3 360 aa9.89□□□□□ -0.83
SYNE1-224ENST00000478916 PICK1Q9NRD5 415 aa9.89□□□□□ -0.83
SYNE1-224ENST00000478916 AFMP43652 599 aa9.89□□□□□ -0.83
SYNE1-224ENST00000478916 CALCOCO2Q13137 446 aa9.89□□□□□ -0.83
SYNE1-224ENST00000478916 WHAMMQ8TF30 809 aa9.89□□□□□ -0.83
SYNE1-224ENST00000478916 MCUR1Q96AQ8 359 aa9.89□□□□□ -0.83
SYNE1-224ENST00000478916 LZTFL1Q9NQ48 299 aa9.89□□□□□ -0.83
SYNE1-224ENST00000478916 ZRANB1Q9UGI0 708 aa9.89□□□□□ -0.83
SYNE1-224ENST00000478916 GJA3Q9Y6H8 435 aa9.89□□□□□ -0.83
SYNE1-224ENST00000478916 UFL1O94874 794 aa9.89□□□□□ -0.83
SYNE1-224ENST00000478916 CCDC62Q6P9F0 684 aa9.89□□□□□ -0.83
SYNE1-224ENST00000478916 GPR161Q8N6U8 529 aaKnown RBP9.89□□□□□ -0.83
SYNE1-224ENST00000478916 GBP5Q96PP8 586 aa9.89□□□□□ -0.83
SYNE1-224ENST00000478916 BABAM1Q9NWV8 329 aa9.89□□□□□ -0.83
SYNE1-224ENST00000478916 FAM169AQ9Y6X4 670 aa9.89□□□□□ -0.83
SYNE1-224ENST00000478916 GOLGA6CA6NDK9 693 aa9.89□□□□□ -0.83
SYNE1-224ENST00000478916 GOLGA6DP0CG33 693 aa9.89□□□□□ -0.83
SYNE1-224ENST00000478916 EEF2P13639 858 aaKnown RBP9.89□□□□□ -0.83
SYNE1-224ENST00000478916 GNA11P29992 359 aa9.89□□□□□ -0.83
SYNE1-224ENST00000478916 EIF6P56537 245 aaKnown RBP9.89□□□□□ -0.83
SYNE1-224ENST00000478916 ZBTB17Q13105 803 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms