RNA–Protein interactions for RNA: ENST00000476135.5

HDAC9-223, Transcript of histone deacetylase 9, human

TSL 5

Gene HDAC9, Length 1,115 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC9-223	ENST00000476135	THUMPD2	Q9BTF0	503 aa	Known RBP	9.47	□□□□□ -0.89
HDAC9-223	ENST00000476135	DEFB129	Q9H1M3	183 aa		9.47	□□□□□ -0.89
HDAC9-223	ENST00000476135	ANKIB1	Q9P2G1	1089 aa		9.47	□□□□□ -0.89
HDAC9-223	ENST00000476135	RPTOR	Q8N122	1335 aa		9.47	□□□□□ -0.89
HDAC9-223	ENST00000476135	SPTBN5	Q9NRC6	3674 aa	Known RBP	9.46	□□□□□ -0.89
HDAC9-223	ENST00000476135	WDHD1	O75717	1129 aa	Predicted RBP	9.46	□□□□□ -0.9
HDAC9-223	ENST00000476135	CCL5	P13501	91 aa		9.46	□□□□□ -0.9
HDAC9-223	ENST00000476135	PTGDR	Q13258	359 aa		9.46	□□□□□ -0.9
HDAC9-223	ENST00000476135	SUPT20HL1	Q3ZLR7	823 aa		9.46	□□□□□ -0.9
HDAC9-223	ENST00000476135	TPRN	Q4KMQ1	711 aa		9.46	□□□□□ -0.9
HDAC9-223	ENST00000476135	ANKRD13A	Q8IZ07	590 aa		9.46	□□□□□ -0.9
HDAC9-223	ENST00000476135	ARHGAP39	Q9C0H5	1083 aa		9.46	□□□□□ -0.9
HDAC9-223	ENST00000476135	ECM29	Q5VYK3	1845 aa		9.45	□□□□□ -0.9
HDAC9-223	ENST00000476135	TLR2	O60603	784 aa		9.45	□□□□□ -0.9
HDAC9-223	ENST00000476135	USP2	O75604	605 aa	Predicted RBP	9.45	□□□□□ -0.9
HDAC9-223	ENST00000476135	GRK4	P32298	578 aa		9.45	□□□□□ -0.9
HDAC9-223	ENST00000476135	PLA2G5	P39877	138 aa		9.45	□□□□□ -0.9
HDAC9-223	ENST00000476135	STRIP1	Q5VSL9	837 aa		9.45	□□□□□ -0.9
HDAC9-223	ENST00000476135	U2AF1L4	Q8WU68	220 aa	Known RBP	9.45	□□□□□ -0.9
HDAC9-223	ENST00000476135	BRI3BP	Q8WY22	251 aa		9.45	□□□□□ -0.9
HDAC9-223	ENST00000476135	RNF208	Q9H0X6	261 aa		9.45	□□□□□ -0.9
HDAC9-223	ENST00000476135	IL21	Q9HBE4	155 aa		9.45	□□□□□ -0.9
HDAC9-223	ENST00000476135	DAXX	Q9UER7	740 aa	Predicted RBP	9.45	□□□□□ -0.9
HDAC9-223	ENST00000476135	VCAN	P13611	3396 aa		9.45	□□□□□ -0.9
HDAC9-223	ENST00000476135	ALPK3	Q96L96	1907 aa		9.44	□□□□□ -0.9
HDAC9-223	ENST00000476135	CCL15-CCL14	A0A0B4J2E2	113 aa		9.44	□□□□□ -0.9
HDAC9-223	ENST00000476135	SGPL1	O95470	568 aa		9.44	□□□□□ -0.9
HDAC9-223	ENST00000476135	ATP2B4	P23634	1241 aa		9.44	□□□□□ -0.9
HDAC9-223	ENST00000476135	HOXD10	P28358	340 aa		9.44	□□□□□ -0.9
HDAC9-223	ENST00000476135	GTF2A2	P52657	109 aa		9.44	□□□□□ -0.9
HDAC9-223	ENST00000476135	UBXN2A	P68543	259 aa		9.44	□□□□□ -0.9
HDAC9-223	ENST00000476135	CCL15	Q16663	113 aa		9.44	□□□□□ -0.9
HDAC9-223	ENST00000476135	FAM109B	Q6ICB4	259 aa	Predicted RBP	9.44	□□□□□ -0.9
HDAC9-223	ENST00000476135	COPS6	Q7L5N1	327 aa		9.44	□□□□□ -0.9
HDAC9-223	ENST00000476135	TDH	Q8IZJ6	230 aa		9.44	□□□□□ -0.9
HDAC9-223	ENST00000476135	HELB	Q8NG08	1087 aa	Predicted RBP	9.44	□□□□□ -0.9
HDAC9-223	ENST00000476135	OPTN	Q96CV9	577 aa		9.44	□□□□□ -0.9
HDAC9-223	ENST00000476135	FAM89A	Q96GI7	184 aa		9.44	□□□□□ -0.9
HDAC9-223	ENST00000476135	TRIM47	Q96LD4	638 aa		9.44	□□□□□ -0.9
HDAC9-223	ENST00000476135	MXD3	Q9BW11	206 aa		9.44	□□□□□ -0.9
HDAC9-223	ENST00000476135	ZCCHC17	Q9NP64	241 aa	Known RBP	9.44	□□□□□ -0.9
HDAC9-223	ENST00000476135	SRRD	Q9UH36	339 aa		9.44	□□□□□ -0.9
HDAC9-223	ENST00000476135	RIPOR2	Q9Y4F9	1068 aa		9.44	□□□□□ -0.9
HDAC9-223	ENST00000476135	ZNF804B	A4D1E1	1349 aa		9.44	□□□□□ -0.9
HDAC9-223	ENST00000476135	XDH	P47989	1333 aa		9.44	□□□□□ -0.9
HDAC9-223	ENST00000476135	OTOF	Q9HC10	1997 aa		9.44	□□□□□ -0.9
HDAC9-223	ENST00000476135	MED23	Q9ULK4	1368 aa		9.43	□□□□□ -0.9
HDAC9-223	ENST00000476135	EIF4G2	P78344	907 aa	Known RBP eCLIP	9.43	□□□□□ -0.9
HDAC9-223	ENST00000476135	PROSER3	Q2NL68	480 aa		9.43	□□□□□ -0.9
HDAC9-223	ENST00000476135	SLF2	Q8IX21	1173 aa		9.43	□□□□□ -0.9
HDAC9-223	ENST00000476135	FAM43A	Q8N2R8	423 aa		9.43	□□□□□ -0.9
HDAC9-223	ENST00000476135	RAET1E	Q8TD07	263 aa		9.43	□□□□□ -0.9
HDAC9-223	ENST00000476135	XAGE3	Q8WTP9	111 aa		9.43	□□□□□ -0.9
HDAC9-223	ENST00000476135	ZNF516	Q92618	1163 aa		9.43	□□□□□ -0.9
HDAC9-223	ENST00000476135	SYMPK	Q92797	1274 aa	Known RBP	9.43	□□□□□ -0.9
HDAC9-223	ENST00000476135	ELP3	Q9H9T3	547 aa		9.43	□□□□□ -0.9
HDAC9-223	ENST00000476135	NUDC	Q9Y266	331 aa		9.43	□□□□□ -0.9
HDAC9-223	ENST00000476135	DLG5	Q8TDM6	1919 aa		9.43	□□□□□ -0.9
HDAC9-223	ENST00000476135	IRS4	O14654	1257 aa	Predicted RBP	9.42	□□□□□ -0.9
HDAC9-223	ENST00000476135	ANXA1	P04083	346 aa		9.42	□□□□□ -0.9
HDAC9-223	ENST00000476135	AIMP1	Q12904	312 aa	Known RBP	9.42	□□□□□ -0.9
HDAC9-223	ENST00000476135	DLGAP5	Q15398	846 aa		9.42	□□□□□ -0.9
HDAC9-223	ENST00000476135	CC2D1B	Q5T0F9	858 aa	Known RBP	9.42	□□□□□ -0.9
HDAC9-223	ENST00000476135	NBPF12	Q5TAG4	269 aa	Predicted RBP	9.42	□□□□□ -0.9
HDAC9-223	ENST00000476135	MTMR14	Q8NCE2	650 aa		9.42	□□□□□ -0.9
HDAC9-223	ENST00000476135	FAM122A	Q96E09	287 aa		9.42	□□□□□ -0.9
HDAC9-223	ENST00000476135	GUCD1	Q96NT3	240 aa		9.42	□□□□□ -0.9
HDAC9-223	ENST00000476135	ISCA1	Q9BUE6	129 aa		9.42	□□□□□ -0.9
HDAC9-223	ENST00000476135	SEC31B	Q9NQW1	1179 aa		9.42	□□□□□ -0.9
HDAC9-223	ENST00000476135	BIN2	Q9UBW5	565 aa	Predicted RBP	9.42	□□□□□ -0.9
HDAC9-223	ENST00000476135	SEMA3E	O15041	775 aa		9.41	□□□□□ -0.9
HDAC9-223	ENST00000476135	PER1	O15534	1290 aa	Predicted RBP	9.41	□□□□□ -0.9
HDAC9-223	ENST00000476135	HSPA5	P11021	654 aa	Known RBP	9.41	□□□□□ -0.9
HDAC9-223	ENST00000476135	HSP90B1	P14625	803 aa	Known RBP	9.41	□□□□□ -0.9
HDAC9-223	ENST00000476135	EIF2S2	P20042	333 aa	Known RBP	9.41	□□□□□ -0.9
HDAC9-223	ENST00000476135	PSMC4	P43686	418 aa		9.41	□□□□□ -0.9
HDAC9-223	ENST00000476135	KIAA0825	Q8IV33	1275 aa		9.41	□□□□□ -0.9
HDAC9-223	ENST00000476135	CFAP53	Q96M91	514 aa		9.41	□□□□□ -0.9
HDAC9-223	ENST00000476135	COA1	Q9GZY4	146 aa		9.41	□□□□□ -0.9
HDAC9-223	ENST00000476135	MYPN	Q86TC9	1320 aa		9.4	□□□□□ -0.9
HDAC9-223	ENST00000476135	TFRC	P02786	760 aa	Known RBP	9.4	□□□□□ -0.9
HDAC9-223	ENST00000476135	U2AF1L5	P0DN76	240 aa	Predicted RBP	9.4	□□□□□ -0.9
HDAC9-223	ENST00000476135	CTGF	P29279	349 aa		9.4	□□□□□ -0.9
HDAC9-223	ENST00000476135	U2AF1	Q01081	240 aa	Known RBP eCLIP	9.4	□□□□□ -0.9
HDAC9-223	ENST00000476135	TTLL5	Q6EMB2	1281 aa		9.4	□□□□□ -0.9
HDAC9-223	ENST00000476135	C17orf99	Q6UX52	265 aa		9.4	□□□□□ -0.9
HDAC9-223	ENST00000476135	ZNF428	Q96B54	188 aa		9.4	□□□□□ -0.9
HDAC9-223	ENST00000476135	UNC93B1	Q9H1C4	597 aa		9.4	□□□□□ -0.9
HDAC9-223	ENST00000476135	TIMELESS	Q9UNS1	1208 aa		9.4	□□□□□ -0.9
HDAC9-223	ENST00000476135	ADGRG1	Q9Y653	693 aa		9.4	□□□□□ -0.9
HDAC9-223	ENST00000476135	FAM205A	Q6ZU69	1335 aa		9.39	□□□□□ -0.91
HDAC9-223	ENST00000476135	IRS2	Q9Y4H2	1338 aa		9.39	□□□□□ -0.91
HDAC9-223	ENST00000476135	MYO1B	O43795	1136 aa		9.39	□□□□□ -0.91
HDAC9-223	ENST00000476135	CETP	P11597	493 aa		9.39	□□□□□ -0.91
HDAC9-223	ENST00000476135	MAGEA10	P43363	369 aa	Predicted RBP	9.39	□□□□□ -0.91
HDAC9-223	ENST00000476135	TRIM28	Q13263	835 aa	Known RBP	9.39	□□□□□ -0.91
HDAC9-223	ENST00000476135	CCDC152	Q4G0S7	254 aa		9.39	□□□□□ -0.91
HDAC9-223	ENST00000476135	PPP1R18	Q6NYC8	613 aa		9.39	□□□□□ -0.91
HDAC9-223	ENST00000476135	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	9.39	□□□□□ -0.91
HDAC9-223	ENST00000476135	NECAB2	Q7Z6G3	386 aa		9.39	□□□□□ -0.91

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