RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 MAP3K9P80192 1104 aa23.01■■□□□ 1.27
COL7A1-209ENST00000474432 VGLL4Q14135 290 aa23.01■■□□□ 1.27
COL7A1-209ENST00000474432 PTPN18Q99952 460 aa23.01■■□□□ 1.27
COL7A1-209ENST00000474432 AKAP2Q9Y2D5 859 aa23.01■■□□□ 1.27
COL7A1-209ENST00000474432 ZBTB7BO15156 539 aaPredicted RBP23■■□□□ 1.27
COL7A1-209ENST00000474432 NFIAQ12857 509 aa23■■□□□ 1.27
COL7A1-209ENST00000474432 CTU1Q7Z7A3 348 aaKnown RBP23■■□□□ 1.27
COL7A1-209ENST00000474432 OPTNQ96CV9 577 aa23■■□□□ 1.27
COL7A1-209ENST00000474432 MS4A4AQ96JQ5 239 aa23■■□□□ 1.27
COL7A1-209ENST00000474432 TMOD2Q9NZR1 351 aa23■■□□□ 1.27
COL7A1-209ENST00000474432 ATP8B2P98198 1209 aa22.99■■□□□ 1.27
COL7A1-209ENST00000474432 SSH3Q8TE77 659 aa22.99■■□□□ 1.27
COL7A1-209ENST00000474432 ZNF384Q8TF68 577 aa22.99■■□□□ 1.27
COL7A1-209ENST00000474432 FAM151AQ8WW52 585 aa22.99■■□□□ 1.27
COL7A1-209ENST00000474432 FAM198AQ9UFP1 575 aa22.99■■□□□ 1.27
COL7A1-209ENST00000474432 C1orf115Q9H7X2 142 aa22.98■■□□□ 1.27
COL7A1-209ENST00000474432 SNCAIPQ9Y6H5 919 aa22.98■■□□□ 1.27
COL7A1-209ENST00000474432 GAKO14976 1311 aa22.98■■□□□ 1.27
COL7A1-209ENST00000474432 ALDH1A1P00352 501 aa22.97■■□□□ 1.27
COL7A1-209ENST00000474432 RGS19P49795 217 aa22.97■■□□□ 1.27
COL7A1-209ENST00000474432 MVPQ14764 893 aaKnown RBP22.97■■□□□ 1.27
COL7A1-209ENST00000474432 ZFPM1Q8IX07 1006 aa22.97■■□□□ 1.27
COL7A1-209ENST00000474432 NEUROD6Q96NK8 337 aa22.97■■□□□ 1.27
COL7A1-209ENST00000474432 HMG20BQ9P0W2 317 aa22.97■■□□□ 1.27
COL7A1-209ENST00000474432 G3BP1Q13283 466 aaKnown RBP eCLIP22.96■■□□□ 1.27
COL7A1-209ENST00000474432 PI16Q6UXB8 463 aa22.96■■□□□ 1.27
COL7A1-209ENST00000474432 FAM163AQ96GL9 167 aaPredicted RBP22.96■■□□□ 1.27
COL7A1-209ENST00000474432 USP40Q9NVE5 1235 aa22.96■■□□□ 1.27
COL7A1-209ENST00000474432 RFX7Q2KHR2 1363 aa22.96■■□□□ 1.27
COL7A1-209ENST00000474432 SPDYE5A6NIY4 337 aa22.95■■□□□ 1.26
COL7A1-209ENST00000474432 TCP10Q12799 353 aa22.95■■□□□ 1.26
COL7A1-209ENST00000474432 BRI3BPQ8WY22 251 aa22.95■■□□□ 1.26
COL7A1-209ENST00000474432 ZKSCAN4Q969J2 545 aaPredicted RBP22.95■■□□□ 1.26
COL7A1-209ENST00000474432 ABCF2Q9UG63 623 aa22.95■■□□□ 1.26
COL7A1-209ENST00000474432 AK9Q5TCS8 1911 aa22.94■■□□□ 1.26
COL7A1-209ENST00000474432 ATRNL1Q5VV63 1379 aa22.94■■□□□ 1.26
COL7A1-209ENST00000474432 FKTNO75072 461 aa22.94■■□□□ 1.26
COL7A1-209ENST00000474432 ARID4AP29374 1257 aaPredicted RBP22.94■■□□□ 1.26
COL7A1-209ENST00000474432 MIGA2Q7L4E1 593 aa22.94■■□□□ 1.26
COL7A1-209ENST00000474432 ITPRIPQ8IWB1 547 aa22.94■■□□□ 1.26
COL7A1-209ENST00000474432 FTSJ3Q8IY81 847 aaKnown RBP22.94■■□□□ 1.26
COL7A1-209ENST00000474432 ZGPATQ8N5A5 531 aaKnown RBP22.94■■□□□ 1.26
COL7A1-209ENST00000474432 WRNIP1Q96S55 665 aa22.94■■□□□ 1.26
COL7A1-209ENST00000474432 ZNF112Q9UJU3 913 aa22.94■■□□□ 1.26
COL7A1-209ENST00000474432 CSADQ9Y600 493 aa22.94■■□□□ 1.26
COL7A1-209ENST00000474432 OTUD5Q96G74 571 aa22.93■■□□□ 1.26
COL7A1-209ENST00000474432 IDI2Q9BXS1 227 aa22.93■■□□□ 1.26
COL7A1-209ENST00000474432 GPR108Q9NPR9 543 aa22.93■■□□□ 1.26
COL7A1-209ENST00000474432 NOP58Q9Y2X3 529 aaKnown RBP22.93■■□□□ 1.26
COL7A1-209ENST00000474432 INPP5BP32019 993 aa22.92■■□□□ 1.26
COL7A1-209ENST00000474432 MCAMP43121 646 aa22.92■■□□□ 1.26
COL7A1-209ENST00000474432 MECOMQ03112 1051 aa22.92■■□□□ 1.26
COL7A1-209ENST00000474432 CRHR2Q13324 411 aa22.92■■□□□ 1.26
COL7A1-209ENST00000474432 TBC1D9Q6ZT07 1266 aa22.92■■□□□ 1.26
COL7A1-209ENST00000474432 SH3BP5LQ7L8J4 393 aa22.92■■□□□ 1.26
COL7A1-209ENST00000474432 SPATA5Q8NB90 893 aa22.92■■□□□ 1.26
COL7A1-209ENST00000474432 PANK1Q8TE04 598 aa22.92■■□□□ 1.26
COL7A1-209ENST00000474432 HOOK2Q96ED9 719 aa22.92■■□□□ 1.26
COL7A1-209ENST00000474432 ZNF341Q9BYN7 854 aa22.92■■□□□ 1.26
COL7A1-209ENST00000474432 WDHD1O75717 1129 aaPredicted RBP22.91■■□□□ 1.26
COL7A1-209ENST00000474432 CAP1Q01518 475 aa22.91■■□□□ 1.26
COL7A1-209ENST00000474432 TNNI3KQ59H18 835 aa22.91■■□□□ 1.26
COL7A1-209ENST00000474432 DCAF15Q66K64 600 aa22.91■■□□□ 1.26
COL7A1-209ENST00000474432 ERO1BQ86YB8 467 aa22.91■■□□□ 1.26
COL7A1-209ENST00000474432 HPS5Q9UPZ3 1129 aa22.91■■□□□ 1.26
COL7A1-209ENST00000474432 FPGT-TNNI3KV9GXZ4 949 aa22.91■■□□□ 1.26
COL7A1-209ENST00000474432 DOCK2Q92608 1830 aa22.91■■□□□ 1.26
COL7A1-209ENST00000474432 MROH7-TTC4A0A0A0MT08 1334 aa22.9■■□□□ 1.26
COL7A1-209ENST00000474432 RGS3P49796 1198 aa22.9■■□□□ 1.26
COL7A1-209ENST00000474432 GTF2A2P52657 109 aa22.9■■□□□ 1.26
COL7A1-209ENST00000474432 RHBDL3P58872 404 aa22.9■■□□□ 1.26
COL7A1-209ENST00000474432 PKN2Q16513 984 aaKnown RBP22.9■■□□□ 1.26
COL7A1-209ENST00000474432 SPTY2D1Q68D10 685 aaPredicted RBP22.9■■□□□ 1.26
COL7A1-209ENST00000474432 DZIP1Q86YF9 867 aaKnown RBP22.9■■□□□ 1.26
COL7A1-209ENST00000474432 FAM43AQ8N2R8 423 aa22.9■■□□□ 1.26
COL7A1-209ENST00000474432 DBNDD2Q9BQY9 259 aa22.9■■□□□ 1.26
COL7A1-209ENST00000474432 DDX4Q9NQI0 724 aaKnown RBP22.9■■□□□ 1.26
COL7A1-209ENST00000474432 GPR75-ASB3A0A0A6YYF3 556 aa22.89■■□□□ 1.25
COL7A1-209ENST00000474432 CCL15-CCL14A0A0B4J2E2 113 aa22.89■■□□□ 1.25
COL7A1-209ENST00000474432 IRF6O14896 467 aa22.89■■□□□ 1.25
COL7A1-209ENST00000474432 ENTPD3O75355 529 aa22.89■■□□□ 1.25
COL7A1-209ENST00000474432 SURF6O75683 361 aaKnown RBP22.89■■□□□ 1.25
COL7A1-209ENST00000474432 BTDP43251 543 aa22.89■■□□□ 1.25
COL7A1-209ENST00000474432 CCL15Q16663 113 aa22.89■■□□□ 1.25
COL7A1-209ENST00000474432 CEP85Q6P2H3 762 aa22.89■■□□□ 1.25
COL7A1-209ENST00000474432 ERICH6Q7L0X2 663 aa22.89■■□□□ 1.25
COL7A1-209ENST00000474432 NSUN4Q96CB9 384 aaKnown RBP22.89■■□□□ 1.25
COL7A1-209ENST00000474432 MYO5AQ9Y4I1 1855 aaKnown RBP22.89■■□□□ 1.25
COL7A1-209ENST00000474432 SLURP2P0DP57 97 aa22.88■■□□□ 1.25
COL7A1-209ENST00000474432 PPIL2Q13356 520 aa22.88■■□□□ 1.25
COL7A1-209ENST00000474432 GORABQ5T7V8 394 aa22.88■■□□□ 1.25
COL7A1-209ENST00000474432 OTUD7BQ6GQQ9 843 aa22.88■■□□□ 1.25
COL7A1-209ENST00000474432 PHF20L1A8MW92 1017 aa22.87■■□□□ 1.25
COL7A1-209ENST00000474432 UQCRFS1P1P0C7P4 283 aa22.87■■□□□ 1.25
COL7A1-209ENST00000474432 MAP3K10Q02779 954 aa22.87■■□□□ 1.25
COL7A1-209ENST00000474432 DDTLA6NHG4 134 aaPredicted RBP22.86■■□□□ 1.25
COL7A1-209ENST00000474432 NOL9Q5SY16 702 aaKnown RBP22.86■■□□□ 1.25
COL7A1-209ENST00000474432 FBXO46Q6PJ61 603 aaPredicted RBP22.86■■□□□ 1.25
COL7A1-209ENST00000474432 SLF2Q8IX21 1173 aa22.86■■□□□ 1.25
COL7A1-209ENST00000474432 SNRKQ9NRH2 765 aa22.86■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms