RNA–Protein interactions for RNA: ENST00000474038.1

LIMS1-212, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 679 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-212ENST00000474038 MKRN3Q13064 507 aaKnown RBP18.54■□□□□ 0.56
LIMS1-212ENST00000474038 RASA3Q14644 834 aa18.54■□□□□ 0.56
LIMS1-212ENST00000474038 NBPF12Q5TAG4 269 aaPredicted RBP18.54■□□□□ 0.56
LIMS1-212ENST00000474038 HHIPL2Q6UWX4 724 aa18.54■□□□□ 0.56
LIMS1-212ENST00000474038 CLASRPQ8N2M8 674 aaKnown RBP18.54■□□□□ 0.56
LIMS1-212ENST00000474038 ZDHHC15Q96MV8 337 aa18.54■□□□□ 0.56
LIMS1-212ENST00000474038 DCTPP1Q9H773 170 aa18.54■□□□□ 0.56
LIMS1-212ENST00000474038 RNF186Q9NXI6 227 aa18.54■□□□□ 0.56
LIMS1-212ENST00000474038 ABCF2Q9UG63 623 aa18.54■□□□□ 0.56
LIMS1-212ENST00000474038 AK9Q5TCS8 1911 aa18.53■□□□□ 0.56
LIMS1-212ENST00000474038 TRPA1O75762 1119 aa18.53■□□□□ 0.56
LIMS1-212ENST00000474038 DIXDC1Q155Q3 683 aa18.53■□□□□ 0.56
LIMS1-212ENST00000474038 SNRKQ9NRH2 765 aa18.53■□□□□ 0.56
LIMS1-212ENST00000474038 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.53■□□□□ 0.56
LIMS1-212ENST00000474038 DOCK2Q92608 1830 aa18.52■□□□□ 0.56
LIMS1-212ENST00000474038 LDLRAD1Q5T700 205 aa18.52■□□□□ 0.56
LIMS1-212ENST00000474038 SPTY2D1Q68D10 685 aaPredicted RBP18.52■□□□□ 0.56
LIMS1-212ENST00000474038 APOBEC3HQ6NTF7 200 aaKnown RBP18.52■□□□□ 0.56
LIMS1-212ENST00000474038 TBC1D9Q6ZT07 1266 aa18.52■□□□□ 0.56
LIMS1-212ENST00000474038 LRRCC1Q9C099 1032 aa18.52■□□□□ 0.56
LIMS1-212ENST00000474038 BCL11AQ9H165 835 aa18.52■□□□□ 0.56
LIMS1-212ENST00000474038 SAGE1Q9NXZ1 904 aa18.52■□□□□ 0.56
LIMS1-212ENST00000474038 MAST2Q6P0Q8 1798 aa18.52■□□□□ 0.55
LIMS1-212ENST00000474038 TCP10L2B9ZVM9 353 aa18.51■□□□□ 0.55
LIMS1-212ENST00000474038 AAMPQ13685 434 aa18.51■□□□□ 0.55
LIMS1-212ENST00000474038 SUPT20HL1Q3ZLR7 823 aa18.51■□□□□ 0.55
LIMS1-212ENST00000474038 CDAN1Q8IWY9 1227 aa18.51■□□□□ 0.55
LIMS1-212ENST00000474038 EXOC6Q8TAG9 804 aa18.51■□□□□ 0.55
LIMS1-212ENST00000474038 DAGLAQ9Y4D2 1042 aa18.51■□□□□ 0.55
LIMS1-212ENST00000474038 PPP1R12BO60237 982 aaPredicted RBP18.5■□□□□ 0.55
LIMS1-212ENST00000474038 SMARCA5O60264 1052 aaPredicted RBP18.5■□□□□ 0.55
LIMS1-212ENST00000474038 IFIT2P09913 472 aaKnown RBP18.5■□□□□ 0.55
LIMS1-212ENST00000474038 CACNB3P54284 484 aa18.5■□□□□ 0.55
LIMS1-212ENST00000474038 TNFAIP1Q13829 316 aa18.5■□□□□ 0.55
LIMS1-212ENST00000474038 MAP3K11Q16584 847 aa18.5■□□□□ 0.55
LIMS1-212ENST00000474038 ERICH6Q7L0X2 663 aa18.5■□□□□ 0.55
LIMS1-212ENST00000474038 DZIP1Q86YF9 867 aaKnown RBP18.5■□□□□ 0.55
LIMS1-212ENST00000474038 CLMNQ96JQ2 1002 aa18.5■□□□□ 0.55
LIMS1-212ENST00000474038 CYP2E1P05181 493 aaPredicted RBP18.49■□□□□ 0.55
LIMS1-212ENST00000474038 ZAP70P43403 619 aa18.49■□□□□ 0.55
LIMS1-212ENST00000474038 MECOMQ03112 1051 aa18.49■□□□□ 0.55
LIMS1-212ENST00000474038 REM2Q8IYK8 340 aaPredicted RBP18.49■□□□□ 0.55
LIMS1-212ENST00000474038 ZNF384Q8TF68 577 aa18.49■□□□□ 0.55
LIMS1-212ENST00000474038 TEPSINQ96N21 525 aa18.49■□□□□ 0.55
LIMS1-212ENST00000474038 TMEM39BQ9GZU3 492 aa18.49■□□□□ 0.55
LIMS1-212ENST00000474038 CDK5RAP2Q96SN8 1893 aa18.48■□□□□ 0.55
LIMS1-212ENST00000474038 USP2O75604 605 aaPredicted RBP18.48■□□□□ 0.55
LIMS1-212ENST00000474038 SPRYD7Q5W111 196 aa18.48■□□□□ 0.55
LIMS1-212ENST00000474038 ABHD8Q96I13 439 aa18.48■□□□□ 0.55
LIMS1-212ENST00000474038 RAI14Q9P0K7 980 aa18.48■□□□□ 0.55
LIMS1-212ENST00000474038 MYH7P12883 1935 aa18.48■□□□□ 0.55
LIMS1-212ENST00000474038 GAKO14976 1311 aa18.48■□□□□ 0.55
LIMS1-212ENST00000474038 SLF2Q8IX21 1173 aa18.47■□□□□ 0.55
LIMS1-212ENST00000474038 NSUN4Q96CB9 384 aaKnown RBP18.47■□□□□ 0.55
LIMS1-212ENST00000474038 SLC10A4Q96EP9 437 aa18.47■□□□□ 0.55
LIMS1-212ENST00000474038 FAM163AQ96GL9 167 aaPredicted RBP18.47■□□□□ 0.55
LIMS1-212ENST00000474038 LRP2BPQ9P2M1 347 aa18.47■□□□□ 0.55
LIMS1-212ENST00000474038 NDUFB9Q9Y6M9 179 aa18.47■□□□□ 0.55
LIMS1-212ENST00000474038 OTOFQ9HC10 1997 aa18.46■□□□□ 0.55
LIMS1-212ENST00000474038 IREB2P48200 963 aaKnown RBP18.46■□□□□ 0.55
LIMS1-212ENST00000474038 TM4SF4P48230 202 aa18.46■□□□□ 0.55
LIMS1-212ENST00000474038 TNNI2P48788 182 aa18.46■□□□□ 0.55
LIMS1-212ENST00000474038 HDAC1Q13547 482 aaPredicted RBP18.46■□□□□ 0.55
LIMS1-212ENST00000474038 FKBP1CQ5VVH2 108 aa18.46■□□□□ 0.55
LIMS1-212ENST00000474038 CDC42EP5Q6NZY7 148 aa18.46■□□□□ 0.55
LIMS1-212ENST00000474038 WNK4Q96J92 1243 aa18.46■□□□□ 0.55
LIMS1-212ENST00000474038 PIH1D3Q9NQM4 214 aaKnown RBP18.46■□□□□ 0.55
LIMS1-212ENST00000474038 TMOD2Q9NZR1 351 aa18.46■□□□□ 0.55
LIMS1-212ENST00000474038 MROH7-TTC4A0A0A0MT08 1334 aa18.46■□□□□ 0.55
LIMS1-212ENST00000474038 IRX6P78412 446 aaPredicted RBP18.45■□□□□ 0.54
LIMS1-212ENST00000474038 GSTO1P78417 241 aa18.45■□□□□ 0.54
LIMS1-212ENST00000474038 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.45■□□□□ 0.54
LIMS1-212ENST00000474038 MCOLN1Q9GZU1 580 aa18.45■□□□□ 0.54
LIMS1-212ENST00000474038 USP40Q9NVE5 1235 aa18.45■□□□□ 0.54
LIMS1-212ENST00000474038 TBC1D8O95759 1140 aa18.44■□□□□ 0.54
LIMS1-212ENST00000474038 LDHCP07864 332 aa18.44■□□□□ 0.54
LIMS1-212ENST00000474038 SREBF2Q12772 1141 aa18.44■□□□□ 0.54
LIMS1-212ENST00000474038 DGKZQ13574 1117 aa18.44■□□□□ 0.54
LIMS1-212ENST00000474038 FAM83AQ86UY5 434 aa18.44■□□□□ 0.54
LIMS1-212ENST00000474038 ANTXR1Q9H6X2 564 aa18.44■□□□□ 0.54
LIMS1-212ENST00000474038 FOCADQ5VW36 1801 aa18.44■□□□□ 0.54
LIMS1-212ENST00000474038 GPR75-ASB3A0A0A6YYF3 556 aa18.43■□□□□ 0.54
LIMS1-212ENST00000474038 ATP5JP18859 108 aa18.43■□□□□ 0.54
LIMS1-212ENST00000474038 GJA5P36382 358 aa18.43■□□□□ 0.54
LIMS1-212ENST00000474038 BTDP43251 543 aa18.43■□□□□ 0.54
LIMS1-212ENST00000474038 ANKRD13AQ8IZ07 590 aa18.43■□□□□ 0.54
LIMS1-212ENST00000474038 UNCXA6NJT0 531 aa18.42■□□□□ 0.54
LIMS1-212ENST00000474038 IGSF3O75054 1194 aa18.42■□□□□ 0.54
LIMS1-212ENST00000474038 NFIAQ12857 509 aa18.42■□□□□ 0.54
LIMS1-212ENST00000474038 NAA16Q6N069 864 aaPredicted RBP18.42■□□□□ 0.54
LIMS1-212ENST00000474038 ELP3Q9H9T3 547 aa18.42■□□□□ 0.54
LIMS1-212ENST00000474038 MANSC4A6NHS7 340 aaPredicted RBP18.41■□□□□ 0.54
LIMS1-212ENST00000474038 IDH1O75874 414 aaKnown RBP18.41■□□□□ 0.54
LIMS1-212ENST00000474038 ZBTB48P10074 688 aaPredicted RBP18.41■□□□□ 0.54
LIMS1-212ENST00000474038 PPP1R3FQ6ZSY5 799 aaPredicted RBP18.41■□□□□ 0.54
LIMS1-212ENST00000474038 GCC1Q96CN9 775 aa18.41■□□□□ 0.54
LIMS1-212ENST00000474038 DNAJC2Q99543 621 aaKnown RBP18.41■□□□□ 0.54
LIMS1-212ENST00000474038 BOLA2Q9H3K6 86 aa18.41■□□□□ 0.54
LIMS1-212ENST00000474038 FAM198AQ9UFP1 575 aa18.41■□□□□ 0.54
LIMS1-212ENST00000474038 RFX7Q2KHR2 1363 aa18.41■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms