RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 HS2ST1Q7LGA3 356 aa10.02□□□□□ -0.8
COL6A3-210ENST00000473258 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.02□□□□□ -0.8
COL6A3-210ENST00000473258 B4GALNT2Q8NHY0 566 aa10.02□□□□□ -0.8
COL6A3-210ENST00000473258 DAB1O75553 588 aa10.02□□□□□ -0.81
COL6A3-210ENST00000473258 SYKP43405 635 aa10.02□□□□□ -0.81
COL6A3-210ENST00000473258 MRPS9P82933 396 aaKnown RBP10.02□□□□□ -0.81
COL6A3-210ENST00000473258 PPARDQ03181 441 aa10.02□□□□□ -0.81
COL6A3-210ENST00000473258 MRPS27Q92552 414 aaKnown RBP10.02□□□□□ -0.81
COL6A3-210ENST00000473258 NRBF2Q96F24 287 aa10.02□□□□□ -0.81
COL6A3-210ENST00000473258 DYDC2Q96IM9 177 aa10.02□□□□□ -0.81
COL6A3-210ENST00000473258 DKK3Q9UBP4 350 aa10.02□□□□□ -0.81
COL6A3-210ENST00000473258 ANGPTL2Q9UKU9 493 aa10.02□□□□□ -0.81
COL6A3-210ENST00000473258 NOB1Q9ULX3 412 aaKnown RBP10.02□□□□□ -0.81
COL6A3-210ENST00000473258 KRT4P19013 534 aa10.02□□□□□ -0.81
COL6A3-210ENST00000473258 SEMA3FQ13275 785 aa10.02□□□□□ -0.81
COL6A3-210ENST00000473258 HSP90AA4PQ58FG1 418 aa10.02□□□□□ -0.81
COL6A3-210ENST00000473258 OMA1Q96E52 524 aa10.02□□□□□ -0.81
COL6A3-210ENST00000473258 KIF9Q9HAQ2 790 aa10.02□□□□□ -0.81
COL6A3-210ENST00000473258 COMMD10Q9Y6G5 202 aa10.02□□□□□ -0.81
COL6A3-210ENST00000473258 TRPA1O75762 1119 aa10.02□□□□□ -0.81
COL6A3-210ENST00000473258 PSMC1P62191 440 aaKnown RBP10.02□□□□□ -0.81
COL6A3-210ENST00000473258 C8orf34Q49A92 452 aa10.02□□□□□ -0.81
COL6A3-210ENST00000473258 ANKRD20A4Q4UJ75 823 aa10.02□□□□□ -0.81
COL6A3-210ENST00000473258 ANKRD20A8PQ5CZ79 823 aa10.02□□□□□ -0.81
COL6A3-210ENST00000473258 BMP2KLQ5H9B9 411 aa10.02□□□□□ -0.81
COL6A3-210ENST00000473258 ANKRD20A2Q5SQ80 823 aa10.02□□□□□ -0.81
COL6A3-210ENST00000473258 ANKRD20A1Q5TYW2 823 aa10.02□□□□□ -0.81
COL6A3-210ENST00000473258 SNRNP27Q8WVK2 155 aaKnown RBP10.02□□□□□ -0.81
COL6A3-210ENST00000473258 C10orf88Q9H8K7 445 aa10.02□□□□□ -0.81
COL6A3-210ENST00000473258 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP10.01□□□□□ -0.81
COL6A3-210ENST00000473258 RGS16O15492 202 aaPredicted RBP10.01□□□□□ -0.81
COL6A3-210ENST00000473258 KCNA4P22459 653 aa10.01□□□□□ -0.81
COL6A3-210ENST00000473258 CYLC2Q14093 348 aaPredicted RBP10.01□□□□□ -0.81
COL6A3-210ENST00000473258 CCDC93Q567U6 631 aa10.01□□□□□ -0.81
COL6A3-210ENST00000473258 ZSCAN25Q6NSZ9 544 aa10.01□□□□□ -0.81
COL6A3-210ENST00000473258 PARP9Q8IXQ6 854 aa10.01□□□□□ -0.81
COL6A3-210ENST00000473258 PALM2Q8IXS6 379 aa10.01□□□□□ -0.81
COL6A3-210ENST00000473258 PAWRQ96IZ0 340 aaKnown RBP10.01□□□□□ -0.81
COL6A3-210ENST00000473258 CCDC151A5D8V7 595 aa10.01□□□□□ -0.81
COL6A3-210ENST00000473258 NBPF26B4DH59 902 aa10.01□□□□□ -0.81
COL6A3-210ENST00000473258 TMCC1O94876 653 aa10.01□□□□□ -0.81
COL6A3-210ENST00000473258 SEC31AO94979 1220 aaKnown RBP10.01□□□□□ -0.81
COL6A3-210ENST00000473258 EXOSC9Q06265 439 aaKnown RBP10.01□□□□□ -0.81
COL6A3-210ENST00000473258 NBPF14Q5TI25 921 aa10.01□□□□□ -0.81
COL6A3-210ENST00000473258 CCDC125Q86Z20 511 aa10.01□□□□□ -0.81
COL6A3-210ENST00000473258 NBPF15Q8N660 670 aa10.01□□□□□ -0.81
COL6A3-210ENST00000473258 IQCDQ96DY2 449 aa10.01□□□□□ -0.81
COL6A3-210ENST00000473258 PYM1Q9BRP8 204 aaKnown RBP10.01□□□□□ -0.81
COL6A3-210ENST00000473258 KLC4Q9NSK0 619 aa10.01□□□□□ -0.81
COL6A3-210ENST00000473258 INTUQ9ULD6 942 aa10.01□□□□□ -0.81
COL6A3-210ENST00000473258 NDC80O14777 642 aa10.01□□□□□ -0.81
COL6A3-210ENST00000473258 DNAJC6O75061 913 aa10.01□□□□□ -0.81
COL6A3-210ENST00000473258 LMNAP02545 664 aaKnown RBP10.01□□□□□ -0.81
COL6A3-210ENST00000473258 KLHL23Q8NBE8 558 aa10.01□□□□□ -0.81
COL6A3-210ENST00000473258 PDZD8Q8NEN9 1154 aa10.01□□□□□ -0.81
COL6A3-210ENST00000473258 TRIM47Q96LD4 638 aa10.01□□□□□ -0.81
COL6A3-210ENST00000473258 HIC2Q96JB3 615 aa10.01□□□□□ -0.81
COL6A3-210ENST00000473258 FERMT1Q9BQL6 677 aa10.01□□□□□ -0.81
COL6A3-210ENST00000473258 TUBA8Q9NY65 449 aaPredicted RBP10.01□□□□□ -0.81
COL6A3-210ENST00000473258 ATP11BQ9Y2G3 1177 aa10.01□□□□□ -0.81
COL6A3-210ENST00000473258 UTP11Q9Y3A2 253 aaKnown RBP10.01□□□□□ -0.81
COL6A3-210ENST00000473258 CTDP1Q9Y5B0 961 aaPredicted RBP10.01□□□□□ -0.81
COL6A3-210ENST00000473258 POTEB3A0JP26 581 aa10□□□□□ -0.81
COL6A3-210ENST00000473258 HNRNPCL2B2RXH8 293 aa10□□□□□ -0.81
COL6A3-210ENST00000473258 HNRNPCL1O60812 293 aaKnown RBP10□□□□□ -0.81
COL6A3-210ENST00000473258 CTNNA1P35221 906 aaKnown RBP10□□□□□ -0.81
COL6A3-210ENST00000473258 TRPC1P48995 793 aa10□□□□□ -0.81
COL6A3-210ENST00000473258 TEFQ10587 303 aa10□□□□□ -0.81
COL6A3-210ENST00000473258 SNX1Q13596 522 aa10□□□□□ -0.81
COL6A3-210ENST00000473258 POTEBQ6S5H4 581 aa10□□□□□ -0.81
COL6A3-210ENST00000473258 PIP4K2CQ8TBX8 421 aa10□□□□□ -0.81
COL6A3-210ENST00000473258 STOML1Q9UBI4 398 aa10□□□□□ -0.81
COL6A3-210ENST00000473258 PALM3A6NDB9 673 aaPredicted RBP10□□□□□ -0.81
COL6A3-210ENST00000473258 I3L4J1 428 aa10□□□□□ -0.81
COL6A3-210ENST00000473258 STXBP3O00186 592 aa10□□□□□ -0.81
COL6A3-210ENST00000473258 RHOBTB1O94844 696 aa10□□□□□ -0.81
COL6A3-210ENST00000473258 GAS8O95995 478 aa10□□□□□ -0.81
COL6A3-210ENST00000473258 F13A1P00488 732 aa10□□□□□ -0.81
COL6A3-210ENST00000473258 CLCN6P51797 869 aa10□□□□□ -0.81
COL6A3-210ENST00000473258 GUCY1B3Q02153 619 aa10□□□□□ -0.81
COL6A3-210ENST00000473258 KRT80Q6KB66 452 aa10□□□□□ -0.81
COL6A3-210ENST00000473258 EP400NLQ6ZTU2 488 aa10□□□□□ -0.81
COL6A3-210ENST00000473258 SCYL3Q8IZE3 742 aa10□□□□□ -0.81
COL6A3-210ENST00000473258 BBOF1Q8ND07 529 aa10□□□□□ -0.81
COL6A3-210ENST00000473258 ZNF483Q8TF39 744 aaPredicted RBP10□□□□□ -0.81
COL6A3-210ENST00000473258 CTNNA3Q9UI47 895 aa10□□□□□ -0.81
COL6A3-210ENST00000473258 WDR46O15213 610 aaKnown RBP10□□□□□ -0.81
COL6A3-210ENST00000473258 ST13P50502 369 aaKnown RBP10□□□□□ -0.81
COL6A3-210ENST00000473258 TMED8Q6PL24 325 aaPredicted RBP10□□□□□ -0.81
COL6A3-210ENST00000473258 TBC1D9Q6ZT07 1266 aa10□□□□□ -0.81
COL6A3-210ENST00000473258 THOC1Q96FV9 657 aaKnown RBP10□□□□□ -0.81
COL6A3-210ENST00000473258 UNC45AQ9H3U1 944 aa10□□□□□ -0.81
COL6A3-210ENST00000473258 TBC1D23Q9NUY8 699 aa10□□□□□ -0.81
COL6A3-210ENST00000473258 MORC2Q9Y6X9 1032 aaPredicted RBP10□□□□□ -0.81
COL6A3-210ENST00000473258 TBCAO75347 108 aaKnown RBP10□□□□□ -0.81
COL6A3-210ENST00000473258 CAPN1P07384 714 aa10□□□□□ -0.81
COL6A3-210ENST00000473258 RNASELQ05823 741 aaKnown RBP10□□□□□ -0.81
COL6A3-210ENST00000473258 TBC1D1Q86TI0 1168 aaPredicted RBP10□□□□□ -0.81
COL6A3-210ENST00000473258 C17orf50Q8WW18 174 aa10□□□□□ -0.81
COL6A3-210ENST00000473258 LZICQ8WZA0 190 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms