RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 UNCXA6NJT0 531 aa20.67■□□□□ 0.9
USP40-212ENST00000473191 MAP3K9P80192 1104 aa20.67■□□□□ 0.9
USP40-212ENST00000473191 CAP1Q01518 475 aa20.67■□□□□ 0.9
USP40-212ENST00000473191 TMOD2Q9NZR1 351 aa20.67■□□□□ 0.9
USP40-212ENST00000473191 FAM198AQ9UFP1 575 aa20.67■□□□□ 0.9
USP40-212ENST00000473191 TESPA1A2RU30 521 aaPredicted RBP20.66■□□□□ 0.9
USP40-212ENST00000473191 SLURP2P0DP57 97 aa20.66■□□□□ 0.9
USP40-212ENST00000473191 ZNF384Q8TF68 577 aa20.66■□□□□ 0.9
USP40-212ENST00000473191 NEUROD6Q96NK8 337 aa20.66■□□□□ 0.9
USP40-212ENST00000473191 SNCAIPQ9Y6H5 919 aa20.66■□□□□ 0.9
USP40-212ENST00000473191 MYH2Q9UKX2 1941 aa20.65■□□□□ 0.9
USP40-212ENST00000473191 SEMA3EO15041 775 aa20.65■□□□□ 0.9
USP40-212ENST00000473191 FKBP1CQ5VVH2 108 aa20.65■□□□□ 0.9
USP40-212ENST00000473191 BRI3BPQ8WY22 251 aa20.65■□□□□ 0.9
USP40-212ENST00000473191 OTUD5Q96G74 571 aa20.65■□□□□ 0.9
USP40-212ENST00000473191 WRNIP1Q96S55 665 aa20.65■□□□□ 0.9
USP40-212ENST00000473191 USP40Q9NVE5 1235 aa20.65■□□□□ 0.9
USP40-212ENST00000473191 ABCF2Q9UG63 623 aa20.65■□□□□ 0.9
USP40-212ENST00000473191 ZBED9Q6R2W3 1325 aa20.64■□□□□ 0.89
USP40-212ENST00000473191 FKTNO75072 461 aa20.64■□□□□ 0.89
USP40-212ENST00000473191 RGS19P49795 217 aa20.64■□□□□ 0.89
USP40-212ENST00000473191 SOX10P56693 466 aa20.64■□□□□ 0.89
USP40-212ENST00000473191 INHBEP58166 350 aa20.64■□□□□ 0.89
USP40-212ENST00000473191 CRHR2Q13324 411 aa20.64■□□□□ 0.89
USP40-212ENST00000473191 POLA2Q14181 598 aa20.64■□□□□ 0.89
USP40-212ENST00000473191 NOM1Q5C9Z4 860 aaKnown RBP20.64■□□□□ 0.89
USP40-212ENST00000473191 TBC1D9Q6ZT07 1266 aa20.64■□□□□ 0.89
USP40-212ENST00000473191 FAM151AQ8WW52 585 aa20.64■□□□□ 0.89
USP40-212ENST00000473191 HPS5Q9UPZ3 1129 aa20.64■□□□□ 0.89
USP40-212ENST00000473191 RPAP1Q9BWH6 1393 aaPredicted RBP20.63■□□□□ 0.89
USP40-212ENST00000473191 ZBTB7BO15156 539 aaPredicted RBP20.63■□□□□ 0.89
USP40-212ENST00000473191 INPP5BP32019 993 aa20.63■□□□□ 0.89
USP40-212ENST00000473191 HMG20BQ9P0W2 317 aa20.63■□□□□ 0.89
USP40-212ENST00000473191 AKAP2Q9Y2D5 859 aa20.63■□□□□ 0.89
USP40-212ENST00000473191 GAKO14976 1311 aa20.62■□□□□ 0.89
USP40-212ENST00000473191 ZBTB22O15209 634 aa20.62■□□□□ 0.89
USP40-212ENST00000473191 ALDH1A1P00352 501 aa20.62■□□□□ 0.89
USP40-212ENST00000473191 G3BP1Q13283 466 aaKnown RBP eCLIP20.62■□□□□ 0.89
USP40-212ENST00000473191 ITPRIPQ8IWB1 547 aa20.62■□□□□ 0.89
USP40-212ENST00000473191 FAM43AQ8N2R8 423 aa20.62■□□□□ 0.89
USP40-212ENST00000473191 CSADQ9Y600 493 aa20.62■□□□□ 0.89
USP40-212ENST00000473191 SPDYE5A6NIY4 337 aa20.61■□□□□ 0.89
USP40-212ENST00000473191 MCAMP43121 646 aa20.61■□□□□ 0.89
USP40-212ENST00000473191 ATP8B2P98198 1209 aa20.61■□□□□ 0.89
USP40-212ENST00000473191 MVPQ14764 893 aaKnown RBP20.61■□□□□ 0.89
USP40-212ENST00000473191 SH3BP5LQ7L8J4 393 aa20.61■□□□□ 0.89
USP40-212ENST00000473191 FTSJ3Q8IY81 847 aaKnown RBP20.61■□□□□ 0.89
USP40-212ENST00000473191 PANK1Q8TE04 598 aa20.61■□□□□ 0.89
USP40-212ENST00000473191 SSH3Q8TE77 659 aa20.61■□□□□ 0.89
USP40-212ENST00000473191 DDX4Q9NQI0 724 aaKnown RBP20.61■□□□□ 0.89
USP40-212ENST00000473191 RFX7Q2KHR2 1363 aa20.6■□□□□ 0.89
USP40-212ENST00000473191 PDS5AQ29RF7 1337 aaKnown RBP20.6■□□□□ 0.89
USP40-212ENST00000473191 CCL15-CCL14A0A0B4J2E2 113 aa20.6■□□□□ 0.89
USP40-212ENST00000473191 IRF6O14896 467 aa20.6■□□□□ 0.89
USP40-212ENST00000473191 MECOMQ03112 1051 aa20.6■□□□□ 0.89
USP40-212ENST00000473191 CCL15Q16663 113 aa20.6■□□□□ 0.89
USP40-212ENST00000473191 DZIP1Q86YF9 867 aaKnown RBP20.6■□□□□ 0.89
USP40-212ENST00000473191 AK9Q5TCS8 1911 aa20.6■□□□□ 0.89
USP40-212ENST00000473191 ATRNL1Q5VV63 1379 aa20.59■□□□□ 0.89
USP40-212ENST00000473191 WDHD1O75717 1129 aaPredicted RBP20.59■□□□□ 0.89
USP40-212ENST00000473191 BTDP43251 543 aa20.59■□□□□ 0.89
USP40-212ENST00000473191 RGS3P49796 1198 aa20.59■□□□□ 0.89
USP40-212ENST00000473191 ZGPATQ8N5A5 531 aaKnown RBP20.59■□□□□ 0.89
USP40-212ENST00000473191 SPATA5Q8NB90 893 aa20.59■□□□□ 0.89
USP40-212ENST00000473191 CD99L2Q8TCZ2 262 aa20.59■□□□□ 0.89
USP40-212ENST00000473191 ZNF341Q9BYN7 854 aa20.59■□□□□ 0.89
USP40-212ENST00000473191 ARID4AP29374 1257 aaPredicted RBP20.58■□□□□ 0.89
USP40-212ENST00000473191 GTF2A2P52657 109 aa20.58■□□□□ 0.89
USP40-212ENST00000473191 MLLT1Q03111 559 aaPredicted RBP20.58■□□□□ 0.89
USP40-212ENST00000473191 ERO1BQ86YB8 467 aa20.58■□□□□ 0.89
USP40-212ENST00000473191 DBNDD2Q9BQY9 259 aa20.58■□□□□ 0.89
USP40-212ENST00000473191 ZNF112Q9UJU3 913 aa20.58■□□□□ 0.89
USP40-212ENST00000473191 TRIM17Q9Y577 477 aa20.58■□□□□ 0.89
USP40-212ENST00000473191 MROH7-TTC4A0A0A0MT08 1334 aa20.57■□□□□ 0.88
USP40-212ENST00000473191 HTTP42858 3142 aa20.57■□□□□ 0.88
USP40-212ENST00000473191 DDTLA6NHG4 134 aaPredicted RBP20.57■□□□□ 0.88
USP40-212ENST00000473191 SURF6O75683 361 aaKnown RBP20.57■□□□□ 0.88
USP40-212ENST00000473191 RHBDL3P58872 404 aa20.57■□□□□ 0.88
USP40-212ENST00000473191 PICALMQ13492 652 aa20.57■□□□□ 0.88
USP40-212ENST00000473191 TNNI3KQ59H18 835 aa20.57■□□□□ 0.88
USP40-212ENST00000473191 GORABQ5T7V8 394 aa20.57■□□□□ 0.88
USP40-212ENST00000473191 DCAF15Q66K64 600 aa20.57■□□□□ 0.88
USP40-212ENST00000473191 ERICH6Q7L0X2 663 aa20.57■□□□□ 0.88
USP40-212ENST00000473191 OTOP1Q7RTM1 612 aa20.57■□□□□ 0.88
USP40-212ENST00000473191 FAM163AQ96GL9 167 aaPredicted RBP20.57■□□□□ 0.88
USP40-212ENST00000473191 IDI2Q9BXS1 227 aa20.57■□□□□ 0.88
USP40-212ENST00000473191 SNRKQ9NRH2 765 aa20.57■□□□□ 0.88
USP40-212ENST00000473191 TLR7Q9NYK1 1049 aaKnown RBP20.57■□□□□ 0.88
USP40-212ENST00000473191 FPGT-TNNI3KV9GXZ4 949 aa20.57■□□□□ 0.88
USP40-212ENST00000473191 ZSWIM8A7E2V4 1837 aa20.57■□□□□ 0.88
USP40-212ENST00000473191 DOCK2Q92608 1830 aa20.57■□□□□ 0.88
USP40-212ENST00000473191 BTBD19C9JJ37 291 aa20.56■□□□□ 0.88
USP40-212ENST00000473191 PKN2Q16513 984 aaKnown RBP20.56■□□□□ 0.88
USP40-212ENST00000473191 OTUD7BQ6GQQ9 843 aa20.56■□□□□ 0.88
USP40-212ENST00000473191 FBXO46Q6PJ61 603 aaPredicted RBP20.56■□□□□ 0.88
USP40-212ENST00000473191 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.56■□□□□ 0.88
USP40-212ENST00000473191 NSUN4Q96CB9 384 aaKnown RBP20.56■□□□□ 0.88
USP40-212ENST00000473191 GPR75-ASB3A0A0A6YYF3 556 aa20.55■□□□□ 0.88
USP40-212ENST00000473191 PHF20L1A8MW92 1017 aa20.55■□□□□ 0.88
USP40-212ENST00000473191 PPIL2Q13356 520 aa20.55■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms