RNA–Protein interactions for RNA: ENST00000467762.2

RIF1-209, Transcript of replication timing regulatory factor 1, human

TSL 4

Gene RIF1, Length 545 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RIF1-209	ENST00000467762	HYPK	Q9NX55	129 aa		6.27	□□□□□ -1.41
RIF1-209	ENST00000467762	DBF4	Q9UBU7	674 aa	Predicted RBP	6.27	□□□□□ -1.41
RIF1-209	ENST00000467762	CCDC39	Q9UFE4	941 aa		6.27	□□□□□ -1.41
RIF1-209	ENST00000467762	LRRFIP2	Q9Y608	721 aa	Known RBP	6.27	□□□□□ -1.41
RIF1-209	ENST00000467762	MST1R	Q04912	1400 aa		6.26	□□□□□ -1.41
RIF1-209	ENST00000467762	NFAT5	O94916	1531 aa		6.26	□□□□□ -1.41
RIF1-209	ENST00000467762	ABCC6	O95255	1503 aa		6.26	□□□□□ -1.41
RIF1-209	ENST00000467762	SETD1B	Q9UPS6	1966 aa	Known RBP	6.26	□□□□□ -1.41
RIF1-209	ENST00000467762	CRYBG1	Q9Y4K1	1723 aa		6.26	□□□□□ -1.41
RIF1-209	ENST00000467762	TTLL8	A6PVC2	850 aa		6.26	□□□□□ -1.41
RIF1-209	ENST00000467762	SGSM2	O43147	1006 aa		6.26	□□□□□ -1.41
RIF1-209	ENST00000467762	SPINT1	O43278	529 aa		6.26	□□□□□ -1.41
RIF1-209	ENST00000467762	TPD52L2	O43399	206 aa	Known RBP	6.26	□□□□□ -1.41
RIF1-209	ENST00000467762	GIGYF1	O75420	1035 aa	Predicted RBP	6.26	□□□□□ -1.41
RIF1-209	ENST00000467762	SURF6	O75683	361 aa	Known RBP	6.26	□□□□□ -1.41
RIF1-209	ENST00000467762	RECK	O95980	971 aa		6.26	□□□□□ -1.41
RIF1-209	ENST00000467762	ADD1	P35611	737 aa	Known RBP	6.26	□□□□□ -1.41
RIF1-209	ENST00000467762	GLIPR1L2	Q4G1C9	344 aa		6.26	□□□□□ -1.41
RIF1-209	ENST00000467762	BEND3	Q5T5X7	828 aa		6.26	□□□□□ -1.41
RIF1-209	ENST00000467762	CCDC181	Q5TID7	509 aa		6.26	□□□□□ -1.41
RIF1-209	ENST00000467762	TMEM164	Q5U3C3	297 aa		6.26	□□□□□ -1.41
RIF1-209	ENST00000467762	PPP1R42	Q7Z4L9	355 aa		6.26	□□□□□ -1.41
RIF1-209	ENST00000467762	GAS2L3	Q86XJ1	694 aa		6.26	□□□□□ -1.41
RIF1-209	ENST00000467762	CLASRP	Q8N2M8	674 aa	Known RBP	6.26	□□□□□ -1.41
RIF1-209	ENST00000467762	KCNB2	Q92953	911 aa		6.26	□□□□□ -1.41
RIF1-209	ENST00000467762	RILPL2	Q969X0	211 aa		6.26	□□□□□ -1.41
RIF1-209	ENST00000467762	UCN2	Q96RP3	112 aa		6.26	□□□□□ -1.41
RIF1-209	ENST00000467762	PANK2	Q9BZ23	570 aa		6.26	□□□□□ -1.41
RIF1-209	ENST00000467762	TANGO6	Q9C0B7	1094 aa		6.26	□□□□□ -1.41
RIF1-209	ENST00000467762	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	6.26	□□□□□ -1.41
RIF1-209	ENST00000467762	MIS18A	Q9NYP9	233 aa		6.26	□□□□□ -1.41
RIF1-209	ENST00000467762	LIMCH1	Q9UPQ0	1083 aa		6.26	□□□□□ -1.41
RIF1-209	ENST00000467762	EXOC6B	Q9Y2D4	811 aa		6.26	□□□□□ -1.41
RIF1-209	ENST00000467762	ZNF142	P52746	1687 aa	Predicted RBP	6.26	□□□□□ -1.41
RIF1-209	ENST00000467762	UTY	O14607	1347 aa		6.25	□□□□□ -1.41
RIF1-209	ENST00000467762	RAD50	Q92878	1312 aa		6.25	□□□□□ -1.41
RIF1-209	ENST00000467762	PNMA6E	A0A0J9YXQ4	647 aa		6.25	□□□□□ -1.41
RIF1-209	ENST00000467762	FIGNL2	A6NMB9	653 aa		6.25	□□□□□ -1.41
RIF1-209	ENST00000467762	BTBD11	A6QL63	1104 aa		6.25	□□□□□ -1.41
RIF1-209	ENST00000467762	SRGAP3	O43295	1099 aa		6.25	□□□□□ -1.41
RIF1-209	ENST00000467762	ZNF500	O60304	480 aa	Predicted RBP	6.25	□□□□□ -1.41
RIF1-209	ENST00000467762	OFD1	O75665	1012 aa		6.25	□□□□□ -1.41
RIF1-209	ENST00000467762	TPM3	P06753	285 aa		6.25	□□□□□ -1.41
RIF1-209	ENST00000467762	PSMA5	P28066	241 aa		6.25	□□□□□ -1.41
RIF1-209	ENST00000467762	CTSO	P43234	321 aa	Predicted RBP	6.25	□□□□□ -1.41
RIF1-209	ENST00000467762	IGBP1	P78318	339 aa		6.25	□□□□□ -1.41
RIF1-209	ENST00000467762	PSME1	Q06323	249 aa		6.25	□□□□□ -1.41
RIF1-209	ENST00000467762	NR1H3	Q13133	447 aa		6.25	□□□□□ -1.41
RIF1-209	ENST00000467762	SEMA3F	Q13275	785 aa		6.25	□□□□□ -1.41
RIF1-209	ENST00000467762	ANKRD1	Q15327	319 aa		6.25	□□□□□ -1.41
RIF1-209	ENST00000467762	C1orf141	Q5JVX7	400 aa		6.25	□□□□□ -1.41
RIF1-209	ENST00000467762	VPS53	Q5VIR6	699 aa		6.25	□□□□□ -1.41
RIF1-209	ENST00000467762	RNF20	Q5VTR2	975 aa		6.25	□□□□□ -1.41
RIF1-209	ENST00000467762	PHLDB3	Q6NSJ2	640 aa		6.25	□□□□□ -1.41
RIF1-209	ENST00000467762	CAVIN1	Q6NZI2	390 aa	Known RBP	6.25	□□□□□ -1.41
RIF1-209	ENST00000467762	KSR2	Q6VAB6	950 aa		6.25	□□□□□ -1.41
RIF1-209	ENST00000467762	IRF7	Q92985	503 aa		6.25	□□□□□ -1.41
RIF1-209	ENST00000467762	EVI5L	Q96CN4	794 aa		6.25	□□□□□ -1.41
RIF1-209	ENST00000467762	CYLD	Q9NQC7	956 aa		6.25	□□□□□ -1.41
RIF1-209	ENST00000467762	NOL7	Q9UMY1	257 aa	Known RBP	6.25	□□□□□ -1.41
RIF1-209	ENST00000467762	WDR3	Q9UNX4	943 aa	Known RBP eCLIP	6.25	□□□□□ -1.41
RIF1-209	ENST00000467762	ZDHHC9	Q9Y397	364 aa		6.25	□□□□□ -1.41
RIF1-209	ENST00000467762	SLIT3	O75094	1523 aa		6.25	□□□□□ -1.41
RIF1-209	ENST00000467762	KIF1A	Q12756	1690 aa		6.24	□□□□□ -1.41
RIF1-209	ENST00000467762	ADAMTS7	Q9UKP4	1686 aa		6.24	□□□□□ -1.41
RIF1-209	ENST00000467762	CAMTA1	Q9Y6Y1	1673 aa		6.24	□□□□□ -1.41
RIF1-209	ENST00000467762	HEG1	Q9ULI3	1381 aa		6.24	□□□□□ -1.41
RIF1-209	ENST00000467762	RRP9	O43818	475 aa	Known RBP	6.24	□□□□□ -1.41
RIF1-209	ENST00000467762	ADH1A	P07327	375 aa		6.24	□□□□□ -1.41
RIF1-209	ENST00000467762	IFIT2	P09913	472 aa	Known RBP	6.24	□□□□□ -1.41
RIF1-209	ENST00000467762	ZKSCAN1	P17029	563 aa	Predicted RBP	6.24	□□□□□ -1.41
RIF1-209	ENST00000467762	KCNA6	P17658	529 aa		6.24	□□□□□ -1.41
RIF1-209	ENST00000467762	PDC	P20941	246 aa		6.24	□□□□□ -1.41
RIF1-209	ENST00000467762	MTERF4	Q7Z6M4	381 aa	Known RBP	6.24	□□□□□ -1.41
RIF1-209	ENST00000467762	KDF1	Q8NAX2	398 aa	Predicted RBP	6.24	□□□□□ -1.41
RIF1-209	ENST00000467762	LINS1	Q8NG48	757 aa		6.24	□□□□□ -1.41
RIF1-209	ENST00000467762	PI4K2B	Q8TCG2	481 aa		6.24	□□□□□ -1.41
RIF1-209	ENST00000467762	MAP7D2	Q96T17	732 aa		6.24	□□□□□ -1.41
RIF1-209	ENST00000467762	INSM2	Q96T92	566 aa	Predicted RBP	6.24	□□□□□ -1.41
RIF1-209	ENST00000467762	DNAJC2	Q99543	621 aa	Known RBP	6.24	□□□□□ -1.41
RIF1-209	ENST00000467762	TSPY26P	Q9H489	355 aa		6.24	□□□□□ -1.41
RIF1-209	ENST00000467762	ZNF395	Q9H8N7	513 aa	Predicted RBP	6.24	□□□□□ -1.41
RIF1-209	ENST00000467762	ECHDC1	Q9NTX5	307 aa		6.24	□□□□□ -1.41
RIF1-209	ENST00000467762	CUEDC1	Q9NWM3	386 aa	Predicted RBP	6.24	□□□□□ -1.41
RIF1-209	ENST00000467762	NOVA2	Q9UNW9	492 aa	Known RBP	6.24	□□□□□ -1.41
RIF1-209	ENST00000467762	SIPA1L3	O60292	1781 aa	Predicted RBP	6.23	□□□□□ -1.41
RIF1-209	ENST00000467762	COL15A1	P39059	1388 aa		6.23	□□□□□ -1.41
RIF1-209	ENST00000467762	RFX7	Q2KHR2	1363 aa		6.23	□□□□□ -1.41
RIF1-209	ENST00000467762	hCG_2014768	A0A024R1R8	64 aa		6.23	□□□□□ -1.41
RIF1-209	ENST00000467762	RNMT	O43148	476 aa	Known RBP	6.23	□□□□□ -1.41
RIF1-209	ENST00000467762	ATP9B	O43861	1147 aa		6.23	□□□□□ -1.41
RIF1-209	ENST00000467762	PPFIA3	O75145	1194 aa		6.23	□□□□□ -1.41
RIF1-209	ENST00000467762	ZSCAN22	P10073	491 aa	Predicted RBP	6.23	□□□□□ -1.41
RIF1-209	ENST00000467762	IBSP	P21815	317 aa	Predicted RBP	6.23	□□□□□ -1.41
RIF1-209	ENST00000467762	UBE2H	P62256	183 aa		6.23	□□□□□ -1.41
RIF1-209	ENST00000467762	G3BP1	Q13283	466 aa	Known RBP eCLIP	6.23	□□□□□ -1.41
RIF1-209	ENST00000467762	OS9	Q13438	667 aa	Predicted RBP	6.23	□□□□□ -1.41
RIF1-209	ENST00000467762	ZNF800	Q2TB10	664 aa	Predicted RBP eCLIP	6.23	□□□□□ -1.41
RIF1-209	ENST00000467762	CCDC183	Q5T5S1	534 aa		6.23	□□□□□ -1.41
RIF1-209	ENST00000467762	ZNF530	Q6P9A1	599 aa	Predicted RBP	6.23	□□□□□ -1.41

Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms