RNA–Protein interactions for RNA: ENST00000465591.1

LIME1-203, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 680 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-203ENST00000465591 PPP1R3FQ6ZSY5 799 aaPredicted RBP26.86■■□□□ 1.89
LIME1-203ENST00000465591 ANKRD13AQ8IZ07 590 aa26.86■■□□□ 1.89
LIME1-203ENST00000465591 ZNF384Q8TF68 577 aa26.86■■□□□ 1.89
LIME1-203ENST00000465591 FPGT-TNNI3KV9GXZ4 949 aa26.86■■□□□ 1.89
LIME1-203ENST00000465591 UNCXA6NJT0 531 aa26.85■■□□□ 1.89
LIME1-203ENST00000465591 GORABQ5T7V8 394 aa26.85■■□□□ 1.89
LIME1-203ENST00000465591 ZGPATQ8N5A5 531 aaKnown RBP26.85■■□□□ 1.89
LIME1-203ENST00000465591 DBNDD2Q9BQY9 259 aa26.85■■□□□ 1.89
LIME1-203ENST00000465591 GPR108Q9NPR9 543 aa26.85■■□□□ 1.89
LIME1-203ENST00000465591 COG6Q9Y2V7 657 aa26.85■■□□□ 1.89
LIME1-203ENST00000465591 GAKO14976 1311 aa26.85■■□□□ 1.89
LIME1-203ENST00000465591 RPAP1Q9BWH6 1393 aaPredicted RBP26.84■■□□□ 1.89
LIME1-203ENST00000465591 MCAMP43121 646 aa26.84■■□□□ 1.89
LIME1-203ENST00000465591 TBC1D9Q6ZT07 1266 aa26.84■■□□□ 1.89
LIME1-203ENST00000465591 SPATA5Q8NB90 893 aa26.84■■□□□ 1.89
LIME1-203ENST00000465591 DDX55Q8NHQ9 600 aaKnown RBP eCLIP26.84■■□□□ 1.89
LIME1-203ENST00000465591 ELP3Q9H9T3 547 aa26.84■■□□□ 1.89
LIME1-203ENST00000465591 USP40Q9NVE5 1235 aa26.84■■□□□ 1.89
LIME1-203ENST00000465591 FAM198AQ9UFP1 575 aa26.84■■□□□ 1.89
LIME1-203ENST00000465591 TBC1D8O95759 1140 aa26.83■■□□□ 1.89
LIME1-203ENST00000465591 ZBTB48P10074 688 aaPredicted RBP26.83■■□□□ 1.89
LIME1-203ENST00000465591 TCP10Q12799 353 aa26.83■■□□□ 1.89
LIME1-203ENST00000465591 DZIP1Q86YF9 867 aaKnown RBP26.83■■□□□ 1.89
LIME1-203ENST00000465591 CNKSR2Q8WXI2 1034 aa26.83■■□□□ 1.89
LIME1-203ENST00000465591 MYO5AQ9Y4I1 1855 aaKnown RBP26.83■■□□□ 1.88
LIME1-203ENST00000465591 MS4A1P11836 297 aa26.82■■□□□ 1.88
LIME1-203ENST00000465591 SREBF2Q12772 1141 aa26.82■■□□□ 1.88
LIME1-203ENST00000465591 VGLL4Q14135 290 aa26.82■■□□□ 1.88
LIME1-203ENST00000465591 ZFPM1Q8IX07 1006 aa26.82■■□□□ 1.88
LIME1-203ENST00000465591 FAM151AQ8WW52 585 aa26.82■■□□□ 1.88
LIME1-203ENST00000465591 ABHD8Q96I13 439 aa26.82■■□□□ 1.88
LIME1-203ENST00000465591 MAP3K9P80192 1104 aa26.81■■□□□ 1.88
LIME1-203ENST00000465591 MECOMQ03112 1051 aa26.81■■□□□ 1.88
LIME1-203ENST00000465591 R3HDMLQ9H3Y0 253 aa26.81■■□□□ 1.88
LIME1-203ENST00000465591 TLR7Q9NYK1 1049 aaKnown RBP26.81■■□□□ 1.88
LIME1-203ENST00000465591 RFX7Q2KHR2 1363 aa26.81■■□□□ 1.88
LIME1-203ENST00000465591 MANSC4A6NHS7 340 aaPredicted RBP26.8■■□□□ 1.88
LIME1-203ENST00000465591 C20orf194Q5TEA3 1177 aa26.8■■□□□ 1.88
LIME1-203ENST00000465591 SPTY2D1Q68D10 685 aaPredicted RBP26.8■■□□□ 1.88
LIME1-203ENST00000465591 ERICH6Q7L0X2 663 aa26.8■■□□□ 1.88
LIME1-203ENST00000465591 OPTNQ96CV9 577 aa26.8■■□□□ 1.88
LIME1-203ENST00000465591 FAM163AQ96GL9 167 aaPredicted RBP26.8■■□□□ 1.88
LIME1-203ENST00000465591 MCOLN1Q9GZU1 580 aa26.8■■□□□ 1.88
LIME1-203ENST00000465591 SNRKQ9NRH2 765 aa26.8■■□□□ 1.88
LIME1-203ENST00000465591 EXOC6BQ9Y2D4 811 aa26.8■■□□□ 1.88
LIME1-203ENST00000465591 IGF2BP3O00425 579 aaKnown RBP eCLIP26.79■■□□□ 1.88
LIME1-203ENST00000465591 UQCRFS1P1P0C7P4 283 aa26.79■■□□□ 1.88
LIME1-203ENST00000465591 MIGA2Q7L4E1 593 aa26.79■■□□□ 1.88
LIME1-203ENST00000465591 EAF2Q96CJ1 260 aaPredicted RBP26.79■■□□□ 1.88
LIME1-203ENST00000465591 ZBTB40Q9NUA8 1239 aa26.79■■□□□ 1.88
LIME1-203ENST00000465591 DBNLQ9UJU6 430 aaKnown RBP26.79■■□□□ 1.88
LIME1-203ENST00000465591 MROH7-TTC4A0A0A0MT08 1334 aa26.79■■□□□ 1.88
LIME1-203ENST00000465591 BTDP43251 543 aa26.78■■□□□ 1.88
LIME1-203ENST00000465591 IFNL1Q8IU54 200 aa26.78■■□□□ 1.88
LIME1-203ENST00000465591 SIRT2Q8IXJ6 389 aa26.78■■□□□ 1.88
LIME1-203ENST00000465591 NSUN4Q96CB9 384 aaKnown RBP26.78■■□□□ 1.88
LIME1-203ENST00000465591 CCDC8Q9H0W5 538 aaPredicted RBP26.78■■□□□ 1.88
LIME1-203ENST00000465591 DDX19BQ9UMR2 479 aa26.78■■□□□ 1.88
LIME1-203ENST00000465591 SNCAIPQ9Y6H5 919 aa26.78■■□□□ 1.88
LIME1-203ENST00000465591 DOCK2Q92608 1830 aa26.77■■□□□ 1.88
LIME1-203ENST00000465591 RGS3P49796 1198 aa26.77■■□□□ 1.88
LIME1-203ENST00000465591 DGKZQ13574 1117 aa26.77■■□□□ 1.88
LIME1-203ENST00000465591 TTC39AQ5SRH9 613 aa26.77■■□□□ 1.88
LIME1-203ENST00000465591 ZKSCAN4Q969J2 545 aaPredicted RBP26.77■■□□□ 1.88
LIME1-203ENST00000465591 WRNIP1Q96S55 665 aa26.77■■□□□ 1.88
LIME1-203ENST00000465591 WDHD1O75717 1129 aaPredicted RBP26.76■■□□□ 1.87
LIME1-203ENST00000465591 PTPN18Q99952 460 aa26.76■■□□□ 1.87
LIME1-203ENST00000465591 IDI2Q9BXS1 227 aa26.76■■□□□ 1.87
LIME1-203ENST00000465591 DDX4Q9NQI0 724 aaKnown RBP26.76■■□□□ 1.87
LIME1-203ENST00000465591 GPR75-ASB3A0A0A6YYF3 556 aa26.75■■□□□ 1.87
LIME1-203ENST00000465591 INHBEP58166 350 aa26.75■■□□□ 1.87
LIME1-203ENST00000465591 RHBDL3P58872 404 aa26.75■■□□□ 1.87
LIME1-203ENST00000465591 CCDC158Q5M9N0 1113 aa26.75■■□□□ 1.87
LIME1-203ENST00000465591 SH3BP5LQ7L8J4 393 aa26.75■■□□□ 1.87
LIME1-203ENST00000465591 SLF2Q8IX21 1173 aa26.75■■□□□ 1.87
LIME1-203ENST00000465591 ZNF296Q8WUU4 475 aaPredicted RBP26.75■■□□□ 1.87
LIME1-203ENST00000465591 MS4A4AQ96JQ5 239 aa26.75■■□□□ 1.87
LIME1-203ENST00000465591 CFHR5Q9BXR6 569 aa26.75■■□□□ 1.87
LIME1-203ENST00000465591 RAI14Q9P0K7 980 aa26.75■■□□□ 1.87
LIME1-203ENST00000465591 CSADQ9Y600 493 aa26.75■■□□□ 1.87
LIME1-203ENST00000465591 MAST2Q6P0Q8 1798 aa26.74■■□□□ 1.87
LIME1-203ENST00000465591 ATRNL1Q5VV63 1379 aa26.74■■□□□ 1.87
LIME1-203ENST00000465591 INPP5BP32019 993 aa26.74■■□□□ 1.87
LIME1-203ENST00000465591 DCAF15Q66K64 600 aa26.74■■□□□ 1.87
LIME1-203ENST00000465591 HOOK2Q96ED9 719 aa26.74■■□□□ 1.87
LIME1-203ENST00000465591 OTUD5Q96G74 571 aa26.74■■□□□ 1.87
LIME1-203ENST00000465591 ZNF341Q9BYN7 854 aa26.74■■□□□ 1.87
LIME1-203ENST00000465591 TESPA1A2RU30 521 aaPredicted RBP26.73■■□□□ 1.87
LIME1-203ENST00000465591 SPDYE5A6NIY4 337 aa26.73■■□□□ 1.87
LIME1-203ENST00000465591 GPR25O00155 361 aa26.73■■□□□ 1.87
LIME1-203ENST00000465591 CYP2E1P05181 493 aaPredicted RBP26.73■■□□□ 1.87
LIME1-203ENST00000465591 ZNF512BQ96KM6 892 aaPredicted RBP26.73■■□□□ 1.87
LIME1-203ENST00000465591 ENTPD3O75355 529 aa26.72■■□□□ 1.87
LIME1-203ENST00000465591 SLURP2P0DP57 97 aa26.72■■□□□ 1.87
LIME1-203ENST00000465591 ZAP70P43403 619 aa26.72■■□□□ 1.87
LIME1-203ENST00000465591 RPAP2Q8IXW5 612 aaPredicted RBP26.72■■□□□ 1.87
LIME1-203ENST00000465591 LRP2BPQ9P2M1 347 aa26.72■■□□□ 1.87
LIME1-203ENST00000465591 ZNF112Q9UJU3 913 aa26.72■■□□□ 1.87
LIME1-203ENST00000465591 PICALMQ13492 652 aa26.71■■□□□ 1.87
LIME1-203ENST00000465591 BRI3BPQ8WY22 251 aa26.71■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms